Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 N 1.46504 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00200 * 270.71004 * 4 3 2 6 6 H 1.08000 * 119.99838 * 326.04106 * 5 4 3 7 7 C 1.38809 * 120.00189 * 146.03456 * 5 4 3 8 8 N 1.31621 * 119.99770 * 336.64653 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 156.64445 * 7 5 4 10 10 H 1.48498 * 109.46631 * 60.00206 * 9 7 5 11 11 H 1.48505 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47185 * 300.00277 * 9 7 5 13 13 C 1.46505 * 119.99526 * 90.70977 * 4 3 2 14 14 C 1.53002 * 109.46973 * 90.00081 * 13 4 3 15 15 H 1.09002 * 109.86646 * 59.55008 * 14 13 4 16 16 C 1.54097 * 109.87786 * 180.70953 * 14 13 4 17 17 C 1.54987 * 104.25205 * 121.59100 * 16 14 13 18 18 C 1.54995 * 102.00994 * 20.66807 * 17 16 14 19 19 H 1.08997 * 110.62261 * 81.75912 * 18 17 16 20 20 C 1.53007 * 110.61472 * 204.59726 * 18 17 16 21 21 O 1.43741 * 109.88120 * 298.54364 * 14 13 4 22 22 H 1.08996 * 109.46701 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47278 * 300.00075 * 1 2 3 24 24 H 1.08999 * 109.46665 * 60.00428 * 1 2 3 25 25 H 1.08996 * 109.47278 * 239.99925 * 2 1 3 26 26 H 1.09004 * 109.47135 * 119.99495 * 2 1 3 27 27 H 1.08996 * 109.47212 * 59.99884 * 3 2 1 28 28 H 1.09004 * 109.46809 * 299.99695 * 3 2 1 29 29 H 0.97003 * 119.99642 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47526 * 330.00015 * 13 4 3 31 31 H 1.09001 * 109.46665 * 209.99420 * 13 4 3 32 32 H 1.09002 * 110.48680 * 240.12779 * 16 14 13 33 33 H 1.09001 * 110.49275 * 2.64285 * 16 14 13 34 34 H 1.08998 * 110.84280 * 262.54137 * 17 16 14 35 35 H 1.09000 * 111.04656 * 138.88483 * 17 16 14 36 36 H 1.08997 * 109.46718 * 177.82160 * 20 18 17 37 37 H 1.08994 * 109.47127 * 297.81724 * 20 18 17 38 38 H 1.08997 * 109.46838 * 57.82399 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.4281 1.1867 6 1 3.7870 1.9400 2.0484 7 6 5.3997 0.7553 1.2815 8 7 5.6779 -0.2201 0.4426 9 14 6.6336 1.2341 2.5997 10 1 6.0193 1.0579 3.9401 11 1 7.8362 0.3697 2.4894 12 1 7.0261 2.6547 2.4178 13 6 4.2380 1.4581 -1.2678 14 6 4.4931 2.9059 -1.6917 15 1 5.0750 3.4190 -0.9260 16 6 5.2484 2.9334 -3.0346 17 6 4.3202 3.7399 -3.9780 18 6 3.4383 4.5220 -2.9716 19 1 3.9575 5.4125 -2.6174 20 6 2.0990 4.8987 -3.6083 21 8 3.2418 3.5846 -1.8912 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 6.5236 -0.6905 0.5091 30 1 3.6492 0.9536 -2.0339 31 1 5.1904 0.9428 -1.1433 32 1 6.2072 3.4397 -2.9227 33 1 5.3944 1.9209 -3.4111 34 1 3.7137 3.0719 -4.5894 35 1 4.8955 4.4225 -4.6035 36 1 1.4795 5.4131 -2.8737 37 1 2.2738 5.5559 -4.4601 38 1 1.5898 3.9956 -3.9445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232001422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = -45.354645 kcal Electronic energy + Delta-G solvation = -16872.324845 eV Core-core repulsion = 14328.788914 eV Total energy + Delta-G solvation = -2543.535932 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.93175 -35.83824 -32.84392 -31.78417 -31.46094 -30.21571 -27.19388 -25.39061 -23.78688 -21.70746 -20.77435 -20.40512 -19.56853 -16.75720 -15.97401 -15.08273 -14.67155 -14.21999 -14.06853 -13.65075 -13.41316 -13.03155 -12.68879 -12.47167 -12.06515 -11.83873 -11.33040 -11.27050 -11.16587 -10.90118 -10.79421 -10.66207 -10.58011 -10.34266 -10.22155 -10.10570 -9.78060 -9.66438 -9.43022 -8.89442 -8.40763 -6.48819 -5.70968 -3.21792 3.40933 3.46501 3.49561 4.43280 4.55477 5.06586 5.08634 5.33489 5.38141 5.50903 5.52735 5.76232 5.80696 5.88537 5.94225 5.97132 6.04932 6.13304 6.24786 6.31025 6.33965 6.43119 6.50904 6.53795 6.65184 6.72037 6.89312 6.93025 7.18023 7.23235 7.43407 7.58163 7.86538 7.90172 8.58709 9.28160 9.93441 10.51955 11.29188 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.010450 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.180752 B = 2678.778827 C = 3648.763941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.153 3.847 4 N -0.580 5.580 5 C -0.248 4.248 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.150 3.850 14 C 0.059 3.941 15 H 0.061 0.939 16 C -0.150 4.150 17 C -0.148 4.148 18 C 0.065 3.935 19 H 0.057 0.943 20 C -0.142 4.142 21 O -0.360 6.360 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 6.254 -7.897 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.027 3.973 4 N -0.298 5.298 5 C -0.378 4.378 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.023 3.977 14 C -0.001 4.001 15 H 0.079 0.921 16 C -0.189 4.189 17 C -0.186 4.186 18 C 0.007 3.993 19 H 0.075 0.925 20 C -0.199 4.199 21 O -0.279 6.279 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.065 6.098 -7.760 10.673 hybrid contribution 1.019 0.223 0.549 1.178 sum -3.047 6.321 -7.211 10.062 Atomic orbital electron populations 1.21746 0.97956 1.00056 1.00639 1.22112 0.92913 1.01334 1.01725 1.20901 0.85057 0.92764 0.98593 1.43737 0.99590 1.84561 1.01961 1.19086 1.02684 1.25669 0.90331 0.92238 1.25036 1.00799 0.95470 0.98237 1.69964 1.23699 1.20332 1.39570 0.86498 0.81136 0.78063 0.81953 1.20839 1.21717 1.21107 1.21225 1.00344 0.89762 0.86362 1.23722 0.84031 0.98142 0.94178 0.92147 1.22984 0.98694 1.00917 0.96265 1.23158 0.98273 0.99026 0.98119 1.23005 0.95549 0.93002 0.87779 0.92478 1.21724 0.96616 1.01583 0.99977 1.88976 1.33278 1.53287 1.52366 0.94089 0.93520 0.93686 0.93295 0.92201 0.94633 0.93799 0.93661 0.95533 0.87395 0.91785 0.90660 0.91010 0.91370 0.92242 0.92036 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.14 -2.97 6.26 -26.73 -0.17 -3.14 16 3 C 0.15 3.49 5.43 -4.04 -0.02 3.46 16 4 N -0.58 -14.90 2.39 -173.23 -0.41 -15.32 16 5 C -0.25 -6.91 9.48 -15.06 -0.14 -7.05 16 6 H 0.06 1.67 7.93 -52.49 -0.42 1.26 16 7 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 8 N -0.89 -25.59 11.34 55.49 0.63 -24.97 16 9 Si 0.89 21.80 29.61 -169.99 -5.03 16.76 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.15 3.60 4.79 -4.04 -0.02 3.58 16 14 C 0.06 1.23 3.69 -26.16 -0.10 1.14 16 15 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 16 C -0.15 -2.52 6.65 -25.11 -0.17 -2.68 16 17 C -0.15 -2.10 6.60 -24.63 -0.16 -2.26 16 18 C 0.06 1.01 3.97 -25.67 -0.10 0.91 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.14 -1.82 9.66 37.16 0.36 -1.46 16 21 O -0.36 -7.27 9.62 -35.23 -0.34 -7.61 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 28 H 0.04 0.97 7.11 -51.93 -0.37 0.60 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.11 2.87 5.33 -51.93 -0.28 2.59 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 34 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -29.16 303.93 -7.74 -36.90 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.93 Total: -0.78 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.24 Total: -9.57 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.21 Total: -40.28 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.34 Total: -7.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.16 -7.74 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.455 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds