Wall clock time and date at job start Mon Mar 30 2020 03:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 N 1.46504 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00200 * 270.71004 * 4 3 2 6 6 H 1.08000 * 119.99838 * 326.04106 * 5 4 3 7 7 C 1.38809 * 120.00189 * 146.03456 * 5 4 3 8 8 N 1.31621 * 119.99770 * 336.64653 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 156.64445 * 7 5 4 10 10 H 1.48498 * 109.46631 * 60.00206 * 9 7 5 11 11 H 1.48505 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47185 * 300.00277 * 9 7 5 13 13 C 1.46505 * 119.99526 * 90.70977 * 4 3 2 14 14 C 1.53002 * 109.46973 * 90.00081 * 13 4 3 15 15 H 1.09002 * 109.86646 * 59.55008 * 14 13 4 16 16 C 1.54097 * 109.87786 * 180.70953 * 14 13 4 17 17 C 1.54987 * 104.25205 * 121.59100 * 16 14 13 18 18 C 1.54995 * 102.00994 * 20.66807 * 17 16 14 19 19 H 1.08997 * 110.62261 * 81.75912 * 18 17 16 20 20 C 1.53007 * 110.61472 * 204.59726 * 18 17 16 21 21 O 1.43741 * 109.88120 * 298.54364 * 14 13 4 22 22 H 1.08996 * 109.46701 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47278 * 300.00075 * 1 2 3 24 24 H 1.08999 * 109.46665 * 60.00428 * 1 2 3 25 25 H 1.08996 * 109.47278 * 239.99925 * 2 1 3 26 26 H 1.09004 * 109.47135 * 119.99495 * 2 1 3 27 27 H 1.08996 * 109.47212 * 59.99884 * 3 2 1 28 28 H 1.09004 * 109.46809 * 299.99695 * 3 2 1 29 29 H 0.97003 * 119.99642 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47526 * 330.00015 * 13 4 3 31 31 H 1.09001 * 109.46665 * 209.99420 * 13 4 3 32 32 H 1.09002 * 110.48680 * 240.12779 * 16 14 13 33 33 H 1.09001 * 110.49275 * 2.64285 * 16 14 13 34 34 H 1.08998 * 110.84280 * 262.54137 * 17 16 14 35 35 H 1.09000 * 111.04656 * 138.88483 * 17 16 14 36 36 H 1.08997 * 109.46718 * 177.82160 * 20 18 17 37 37 H 1.08994 * 109.47127 * 297.81724 * 20 18 17 38 38 H 1.08997 * 109.46838 * 57.82399 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.4281 1.1867 6 1 3.7870 1.9400 2.0484 7 6 5.3997 0.7553 1.2815 8 7 5.6779 -0.2201 0.4426 9 14 6.6336 1.2341 2.5997 10 1 6.0193 1.0579 3.9401 11 1 7.8362 0.3697 2.4894 12 1 7.0261 2.6547 2.4178 13 6 4.2380 1.4581 -1.2678 14 6 4.4931 2.9059 -1.6917 15 1 5.0750 3.4190 -0.9260 16 6 5.2484 2.9334 -3.0346 17 6 4.3202 3.7399 -3.9780 18 6 3.4383 4.5220 -2.9716 19 1 3.9575 5.4125 -2.6174 20 6 2.0990 4.8987 -3.6083 21 8 3.2418 3.5846 -1.8912 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 6.5236 -0.6905 0.5091 30 1 3.6492 0.9536 -2.0339 31 1 5.1904 0.9428 -1.1433 32 1 6.2072 3.4397 -2.9227 33 1 5.3944 1.9209 -3.4111 34 1 3.7137 3.0719 -4.5894 35 1 4.8955 4.4225 -4.6035 36 1 1.4795 5.4131 -2.8737 37 1 2.2738 5.5559 -4.4601 38 1 1.5898 3.9956 -3.9445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232001422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:27 Heat of formation + Delta-G solvation = -61.583327 kcal Electronic energy + Delta-G solvation = -16873.028574 eV Core-core repulsion = 14328.788914 eV Total energy + Delta-G solvation = -2544.239660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39185 -37.71073 -34.63802 -33.29128 -32.97221 -31.91641 -28.72871 -27.30149 -25.33235 -23.40606 -22.12316 -21.93833 -21.35174 -18.74239 -17.39938 -16.87497 -16.42173 -15.92662 -15.67179 -15.36778 -14.86165 -14.64996 -14.27029 -13.81848 -13.44451 -13.29677 -13.02070 -12.78094 -12.68956 -12.61733 -12.52656 -12.32977 -12.11500 -11.95948 -11.83306 -11.63585 -11.53594 -11.40516 -11.25010 -10.53488 -10.41712 -8.55575 -7.81200 -5.36864 1.44849 1.46871 1.54232 2.51923 3.08358 3.22350 3.69796 3.83822 3.93655 4.10295 4.28412 4.28862 4.44292 4.46631 4.55442 4.68978 4.70605 4.79693 4.84784 4.88596 4.93851 5.01060 5.05776 5.16447 5.23207 5.24681 5.31551 5.34567 5.40141 5.46735 5.60907 5.62806 5.78456 6.32541 6.46915 7.18209 7.90228 8.43522 9.15225 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.010450 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.180752 B = 2678.778827 C = 3648.763941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C 0.154 3.846 4 N -0.596 5.596 5 C -0.263 4.263 6 H 0.050 0.950 7 C -0.039 4.039 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.281 1.281 13 C 0.155 3.845 14 C 0.067 3.933 15 H 0.031 0.969 16 C -0.148 4.148 17 C -0.135 4.135 18 C 0.052 3.948 19 H 0.062 0.938 20 C -0.136 4.136 21 O -0.385 6.385 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.252 0.748 30 H 0.023 0.977 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 7.417 -9.050 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.029 3.971 4 N -0.316 5.316 5 C -0.393 4.393 6 H 0.068 0.932 7 C -0.236 4.236 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.208 1.208 13 C 0.028 3.972 14 C 0.007 3.993 15 H 0.049 0.951 16 C -0.186 4.186 17 C -0.173 4.173 18 C -0.005 4.005 19 H 0.080 0.920 20 C -0.193 4.193 21 O -0.305 6.305 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.575 7.274 -8.925 12.389 hybrid contribution 1.120 -0.107 0.887 1.433 sum -3.454 7.167 -8.038 11.309 Atomic orbital electron populations 1.21644 0.94093 1.01677 1.01894 1.21947 0.96251 0.99444 0.99482 1.20942 0.83765 0.93806 0.98601 1.43967 1.00789 1.84930 1.01909 1.19237 1.03559 1.25594 0.90959 0.93220 1.25680 1.02067 0.95383 1.00428 1.70090 1.23862 1.21099 1.41086 0.85549 0.78876 0.77629 0.79708 1.20339 1.21479 1.20775 1.21084 0.98627 0.91777 0.85709 1.23331 0.84704 0.95557 0.95704 0.95126 1.22945 0.99410 1.01686 0.94555 1.23139 0.97634 0.99014 0.97488 1.23365 0.97690 0.92405 0.87031 0.91959 1.21721 0.94830 1.01968 1.00755 1.88928 1.32763 1.54350 1.54427 0.92317 0.92574 0.92093 0.94748 0.95163 0.95089 0.93069 0.93866 0.95896 0.90107 0.90478 0.90881 0.90371 0.88076 0.92574 0.88794 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.91 71.98 0.71 -3.59 16 2 C -0.13 -5.59 6.26 30.60 0.19 -5.39 16 3 C 0.15 7.13 5.43 86.38 0.47 7.60 16 4 N -0.60 -31.54 2.39 -701.98 -1.68 -33.22 16 5 C -0.26 -15.08 9.48 84.03 0.80 -14.28 16 6 H 0.05 2.88 7.93 -2.91 -0.02 2.86 16 7 C -0.04 -2.20 4.94 84.86 0.42 -1.78 16 8 N -0.92 -53.93 11.34 21.65 0.25 -53.69 16 9 Si 0.95 45.50 29.61 68.60 2.03 47.54 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.15 7.63 4.79 86.38 0.41 8.05 16 14 C 0.07 2.83 3.69 30.97 0.11 2.94 16 15 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 16 C -0.15 -4.78 6.65 31.65 0.21 -4.57 16 17 C -0.14 -3.45 6.60 31.96 0.21 -3.23 16 18 C 0.05 1.52 3.97 31.28 0.12 1.64 16 19 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 20 C -0.14 -3.09 9.66 71.98 0.70 -2.40 16 21 O -0.38 -15.40 9.62 -148.98 -1.43 -16.84 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 28 H 0.05 2.26 7.11 -2.39 -0.02 2.24 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 31 H 0.08 4.47 5.33 -2.39 -0.01 4.45 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 2.39 7.70 -2.39 -0.02 2.37 16 34 H 0.08 1.91 8.06 -2.39 -0.02 1.89 16 35 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.03 303.93 4.51 -59.52 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.99 Total: 11.70 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.36 Total: -15.01 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.43 Total: -86.91 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.43 Total: -16.84 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.54 kcal Total: -64.03 4.51 -59.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.066 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds