Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47336 * 2 1 4 4 H 1.09004 * 109.47374 * 305.30905 * 3 2 1 5 5 C 1.50695 * 109.47583 * 185.30755 * 3 2 1 6 6 H 1.08002 * 120.00295 * 240.00249 * 5 3 2 7 7 C 1.37885 * 119.99779 * 60.27336 * 5 3 2 8 8 N 1.31515 * 119.99886 * 359.72604 * 7 5 3 9 9 Si 1.86798 * 119.99755 * 179.72788 * 7 5 3 10 10 H 1.48497 * 109.47304 * 90.00212 * 9 7 5 11 11 H 1.48505 * 109.46982 * 210.00201 * 9 7 5 12 12 H 1.48497 * 109.47406 * 329.99596 * 9 7 5 13 13 N 1.46908 * 109.47205 * 65.30759 * 3 2 1 14 14 C 1.46901 * 110.99987 * 205.52253 * 13 3 2 15 15 H 1.09000 * 110.01155 * 321.01943 * 14 13 3 16 16 C 1.54266 * 110.03360 * 82.41017 * 14 13 3 17 17 C 1.54965 * 104.15761 * 142.86112 * 16 14 13 18 18 C 1.54889 * 102.77991 * 322.11554 * 17 16 14 19 19 C 1.53877 * 110.02890 * 199.63273 * 14 13 3 20 20 H 1.08999 * 110.03165 * 121.38094 * 19 14 13 21 21 O 1.42901 * 110.03334 * 359.97438 * 19 14 13 22 22 C 1.42898 * 113.99976 * 150.00585 * 21 19 14 23 23 H 1.09003 * 109.46569 * 184.57169 * 1 2 3 24 24 H 1.08999 * 109.46835 * 304.57061 * 1 2 3 25 25 H 1.08995 * 109.46886 * 64.57301 * 1 2 3 26 26 H 1.09000 * 109.47115 * 239.99830 * 2 1 3 27 27 H 1.09006 * 109.47276 * 119.99813 * 2 1 3 28 28 H 0.96996 * 119.99395 * 180.02562 * 8 7 5 29 29 H 1.00897 * 110.99722 * 81.56956 * 13 3 2 30 30 H 1.08999 * 110.48618 * 261.57260 * 16 14 13 31 31 H 1.08997 * 110.48347 * 24.21930 * 16 14 13 32 32 H 1.08999 * 110.76383 * 203.77824 * 17 16 14 33 33 H 1.09007 * 110.87560 * 80.50087 * 17 16 14 34 34 H 1.09005 * 110.48469 * 279.23954 * 18 17 16 35 35 H 1.08994 * 110.48835 * 156.59131 * 18 17 16 36 36 H 1.08998 * 109.47245 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.46905 * 300.00029 * 22 21 19 38 38 H 1.09002 * 109.47232 * 59.99382 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6012 1.9831 -0.8386 5 6 3.5413 1.4445 -0.1314 6 1 4.1505 1.8877 0.6424 7 6 4.1368 0.8856 -1.2424 8 7 3.3949 0.3459 -2.1847 9 14 5.9973 0.8950 -1.4088 10 1 6.5553 -0.3376 -0.7968 11 1 6.3654 0.9441 -2.8467 12 1 6.5504 2.0860 -0.7156 13 7 1.6578 2.0970 1.2584 14 6 1.5661 3.5532 1.0877 15 1 2.3674 3.9037 0.4371 16 6 0.1956 3.9297 0.4880 17 6 -0.1774 5.2557 1.1979 18 6 0.3349 5.0273 2.6417 19 6 1.6551 4.2509 2.4563 20 1 2.4995 4.9401 2.4698 21 8 1.8003 3.2783 3.4931 22 6 2.5360 3.7426 4.6267 23 1 -0.3632 -1.0245 0.0819 24 1 -0.3633 0.5831 0.8462 25 1 -0.3633 0.4412 -0.9281 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8140 -0.0476 -2.9660 29 1 2.3004 1.8595 1.9992 30 1 0.2790 4.0825 -0.5880 31 1 -0.5422 3.1584 0.7087 32 1 -1.2567 5.4077 1.1905 33 1 0.3334 6.1007 0.7359 34 1 -0.3803 4.4332 3.2107 35 1 0.5194 5.9808 3.1363 36 1 2.6014 2.9465 5.3683 37 1 3.5394 4.0324 4.3147 38 1 2.0282 4.6033 5.0618 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251392617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -60.131469 kcal Electronic energy + Delta-G solvation = -16900.076593 eV Core-core repulsion = 14355.899890 eV Total energy + Delta-G solvation = -2544.176703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.87393 -36.04304 -34.82955 -31.94023 -30.66171 -27.88363 -27.17829 -25.83899 -24.90142 -22.52329 -20.56063 -19.41746 -19.08646 -16.51521 -16.39146 -15.54483 -14.88334 -14.58251 -14.33105 -13.62465 -13.53240 -13.14111 -12.65840 -12.51344 -11.98665 -11.40716 -11.22336 -11.15468 -11.01891 -10.88900 -10.74209 -10.64578 -10.51618 -10.42848 -10.17013 -9.91924 -9.49865 -9.40435 -9.13212 -8.91811 -8.30331 -7.05405 -5.92485 -4.05755 3.29209 3.36190 3.38548 4.09971 4.43625 4.93798 5.00983 5.25320 5.32118 5.44822 5.53450 5.56755 5.65489 5.81784 5.93996 5.96513 6.09441 6.17297 6.31767 6.39490 6.49148 6.58097 6.63125 6.68642 6.82849 6.92245 7.25257 7.29686 7.49855 7.59987 7.73829 7.87668 8.20723 8.31424 8.48501 8.88053 9.12527 9.61593 11.06453 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.008773 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.230168 B = 3190.743158 C = 3605.426797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.031 0.969 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.092 3.908 15 H 0.050 0.950 16 C -0.111 4.111 17 C -0.123 4.123 18 C -0.140 4.140 19 C 0.083 3.917 20 H 0.054 0.946 21 O -0.363 6.363 22 C 0.030 3.970 23 H 0.022 0.978 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.338 0.662 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 7.853 8.218 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.105 3.895 4 H 0.049 0.951 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.303 5.303 14 C -0.019 4.019 15 H 0.068 0.932 16 C -0.149 4.149 17 C -0.161 4.161 18 C -0.178 4.178 19 C 0.025 3.975 20 H 0.072 0.928 21 O -0.280 6.280 22 C -0.067 4.067 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.082 7.464 7.935 12.021 hybrid contribution 2.277 0.523 -0.179 2.343 sum -2.805 7.987 7.756 11.481 Atomic orbital electron populations 1.21713 0.99102 0.98352 1.00326 1.21464 0.92076 0.99356 1.01405 1.19177 0.92465 0.91302 0.86590 0.95111 1.21920 0.93070 1.38083 1.05036 0.93079 1.24937 0.97675 0.95170 0.95796 1.69886 1.34613 1.38582 1.09296 0.86695 0.86418 0.78319 0.77118 1.20694 1.21267 1.20207 1.60887 1.55633 1.04168 1.09632 1.22039 0.96492 0.91416 0.91973 0.93177 1.22434 0.97688 0.95955 0.98812 1.22398 1.00192 0.98261 0.95226 1.22820 0.98085 0.99201 0.97679 1.23022 0.95936 0.89817 0.88722 0.92756 1.88018 1.74515 1.38346 1.27160 1.22738 0.94855 0.99663 0.89461 0.95845 0.92976 0.94692 0.89412 0.95237 0.92999 0.84269 0.92210 0.90486 0.91841 0.92020 0.90560 0.92570 0.90026 0.94520 0.94858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.86 37.16 0.37 -2.58 16 2 C -0.10 -2.59 5.45 -26.73 -0.15 -2.73 16 3 C 0.21 5.37 1.81 -68.86 -0.12 5.24 16 4 H 0.03 0.85 7.56 -51.93 -0.39 0.46 16 5 C -0.54 -14.88 8.29 -34.44 -0.29 -15.16 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.34 11.30 55.43 0.63 -24.71 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.67 -14.68 5.07 -99.78 -0.51 -15.18 16 14 C 0.09 1.77 3.05 -66.59 -0.20 1.57 16 15 H 0.05 1.08 7.74 -51.93 -0.40 0.68 16 16 C -0.11 -1.90 6.12 -25.03 -0.15 -2.05 16 17 C -0.12 -1.67 6.91 -24.70 -0.17 -1.84 16 18 C -0.14 -1.92 6.56 -25.07 -0.16 -2.09 16 19 C 0.08 1.35 3.37 -25.61 -0.09 1.26 16 20 H 0.05 0.83 7.80 -51.93 -0.41 0.42 16 21 O -0.36 -6.11 8.39 -35.23 -0.30 -6.40 16 22 C 0.03 0.38 10.85 101.05 1.10 1.48 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.09 7.64 -51.93 -0.40 0.69 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.40 5.96 -51.93 -0.31 2.10 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.34 7.66 6.80 -39.29 -0.27 7.39 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -28.33 300.24 -7.41 -35.75 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.78 Total: 4.77 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 0.03 Total: -15.15 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.12 Total: -39.89 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.30 Total: -6.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.33 -7.41 -35.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251392617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.386 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds