Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47336 * 2 1 4 4 H 1.09004 * 109.47374 * 305.30905 * 3 2 1 5 5 C 1.50695 * 109.47583 * 185.30755 * 3 2 1 6 6 H 1.08002 * 120.00295 * 240.00249 * 5 3 2 7 7 C 1.37885 * 119.99779 * 60.27336 * 5 3 2 8 8 N 1.31515 * 119.99886 * 359.72604 * 7 5 3 9 9 Si 1.86798 * 119.99755 * 179.72788 * 7 5 3 10 10 H 1.48497 * 109.47304 * 90.00212 * 9 7 5 11 11 H 1.48505 * 109.46982 * 210.00201 * 9 7 5 12 12 H 1.48497 * 109.47406 * 329.99596 * 9 7 5 13 13 N 1.46908 * 109.47205 * 65.30759 * 3 2 1 14 14 C 1.46901 * 110.99987 * 205.52253 * 13 3 2 15 15 H 1.09000 * 110.01155 * 321.01943 * 14 13 3 16 16 C 1.54266 * 110.03360 * 82.41017 * 14 13 3 17 17 C 1.54965 * 104.15761 * 142.86112 * 16 14 13 18 18 C 1.54889 * 102.77991 * 322.11554 * 17 16 14 19 19 C 1.53877 * 110.02890 * 199.63273 * 14 13 3 20 20 H 1.08999 * 110.03165 * 121.38094 * 19 14 13 21 21 O 1.42901 * 110.03334 * 359.97438 * 19 14 13 22 22 C 1.42898 * 113.99976 * 150.00585 * 21 19 14 23 23 H 1.09003 * 109.46569 * 184.57169 * 1 2 3 24 24 H 1.08999 * 109.46835 * 304.57061 * 1 2 3 25 25 H 1.08995 * 109.46886 * 64.57301 * 1 2 3 26 26 H 1.09000 * 109.47115 * 239.99830 * 2 1 3 27 27 H 1.09006 * 109.47276 * 119.99813 * 2 1 3 28 28 H 0.96996 * 119.99395 * 180.02562 * 8 7 5 29 29 H 1.00897 * 110.99722 * 81.56956 * 13 3 2 30 30 H 1.08999 * 110.48618 * 261.57260 * 16 14 13 31 31 H 1.08997 * 110.48347 * 24.21930 * 16 14 13 32 32 H 1.08999 * 110.76383 * 203.77824 * 17 16 14 33 33 H 1.09007 * 110.87560 * 80.50087 * 17 16 14 34 34 H 1.09005 * 110.48469 * 279.23954 * 18 17 16 35 35 H 1.08994 * 110.48835 * 156.59131 * 18 17 16 36 36 H 1.08998 * 109.47245 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.46905 * 300.00029 * 22 21 19 38 38 H 1.09002 * 109.47232 * 59.99382 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6012 1.9831 -0.8386 5 6 3.5413 1.4445 -0.1314 6 1 4.1505 1.8877 0.6424 7 6 4.1368 0.8856 -1.2424 8 7 3.3949 0.3459 -2.1847 9 14 5.9973 0.8950 -1.4088 10 1 6.5553 -0.3376 -0.7968 11 1 6.3654 0.9441 -2.8467 12 1 6.5504 2.0860 -0.7156 13 7 1.6578 2.0970 1.2584 14 6 1.5661 3.5532 1.0877 15 1 2.3674 3.9037 0.4371 16 6 0.1956 3.9297 0.4880 17 6 -0.1774 5.2557 1.1979 18 6 0.3349 5.0273 2.6417 19 6 1.6551 4.2509 2.4563 20 1 2.4995 4.9401 2.4698 21 8 1.8003 3.2783 3.4931 22 6 2.5360 3.7426 4.6267 23 1 -0.3632 -1.0245 0.0819 24 1 -0.3633 0.5831 0.8462 25 1 -0.3633 0.4412 -0.9281 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8140 -0.0476 -2.9660 29 1 2.3004 1.8595 1.9992 30 1 0.2790 4.0825 -0.5880 31 1 -0.5422 3.1584 0.7087 32 1 -1.2567 5.4077 1.1905 33 1 0.3334 6.1007 0.7359 34 1 -0.3803 4.4332 3.2107 35 1 0.5194 5.9808 3.1363 36 1 2.6014 2.9465 5.3683 37 1 3.5394 4.0324 4.3147 38 1 2.0282 4.6033 5.0618 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251392617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -77.522693 kcal Electronic energy + Delta-G solvation = -16900.830733 eV Core-core repulsion = 14355.899890 eV Total energy + Delta-G solvation = -2544.930843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21276 -37.63128 -36.37026 -33.94575 -32.42071 -29.09729 -28.89280 -27.18925 -26.46688 -24.43997 -21.87255 -21.16064 -20.63026 -18.59623 -17.71289 -16.92857 -16.65989 -15.98551 -15.72465 -15.25185 -15.03190 -14.57583 -14.38916 -14.09975 -13.34227 -13.24062 -13.09977 -12.90583 -12.63629 -12.34323 -12.23331 -12.17744 -11.97443 -11.87067 -11.64885 -11.47862 -11.43693 -11.18469 -10.93309 -10.46031 -10.34781 -8.92487 -8.02840 -6.26583 1.36147 1.37268 1.46308 2.39379 2.90554 3.14315 3.70478 3.77390 3.86270 4.24035 4.35676 4.55088 4.56093 4.61980 4.67552 4.68618 4.79815 4.82964 4.88466 4.93931 5.04254 5.08339 5.15176 5.21179 5.24637 5.33982 5.44365 5.50399 5.55826 5.70135 5.81207 6.14184 6.26176 6.34904 6.53200 6.94700 7.13485 7.45126 8.91876 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.008773 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.230168 B = 3190.743158 C = 3605.426797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.222 3.778 4 H 0.000 1.000 5 C -0.558 4.558 6 H 0.044 0.956 7 C 0.019 3.981 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.662 5.662 14 C 0.082 3.918 15 H 0.018 0.982 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.130 4.130 19 C 0.086 3.914 20 H 0.063 0.937 21 O -0.390 6.390 22 C 0.025 3.975 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 9.008 9.542 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.017 0.983 5 C -0.597 4.597 6 H 0.062 0.938 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.293 5.293 14 C -0.029 4.029 15 H 0.036 0.964 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.167 4.167 19 C 0.027 3.973 20 H 0.081 0.919 21 O -0.309 6.309 22 C -0.071 4.071 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.294 8.630 9.272 13.728 hybrid contribution 2.354 0.162 -0.579 2.429 sum -2.940 8.792 8.693 12.709 Atomic orbital electron populations 1.21555 0.96426 0.99816 1.00326 1.21339 0.94455 0.98572 0.99632 1.18934 0.91248 0.91491 0.87024 0.98253 1.22185 0.94338 1.38127 1.05079 0.93811 1.25673 1.02046 0.94848 0.95511 1.70012 1.36284 1.38998 1.09638 0.85697 0.81148 0.78407 0.77197 1.20124 1.20736 1.19817 1.60844 1.54760 1.05978 1.07750 1.22183 0.96678 0.89853 0.94174 0.96359 1.22370 0.96105 0.97978 0.98356 1.22381 1.01760 0.96210 0.94655 1.22762 0.96217 1.00031 0.97732 1.22975 0.97926 0.89498 0.86867 0.91907 1.87960 1.75252 1.39413 1.28224 1.22929 0.94728 1.01008 0.88442 0.93688 0.92398 0.95085 0.92209 0.95798 0.92914 0.84888 0.93585 0.91631 0.89665 0.90724 0.90854 0.89588 0.88870 0.94462 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 9.86 71.98 0.71 -4.57 16 2 C -0.10 -5.12 5.45 30.59 0.17 -4.96 16 3 C 0.22 11.57 1.81 44.16 0.08 11.65 16 4 H 0.00 -0.03 7.56 -2.39 -0.02 -0.05 16 5 C -0.56 -31.44 8.29 25.60 0.21 -31.23 16 6 H 0.04 2.47 7.73 -2.91 -0.02 2.45 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -53.23 11.30 21.45 0.24 -52.99 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.66 -29.54 5.07 -469.59 -2.38 -31.92 16 14 C 0.08 3.21 3.05 45.64 0.14 3.34 16 15 H 0.02 0.82 7.74 -2.39 -0.02 0.80 16 16 C -0.11 -3.76 6.12 31.70 0.19 -3.56 16 17 C -0.11 -2.78 6.91 31.91 0.22 -2.56 16 18 C -0.13 -3.17 6.56 31.67 0.21 -2.96 16 19 C 0.09 2.66 3.37 31.32 0.11 2.76 16 20 H 0.06 1.81 7.80 -2.39 -0.02 1.79 16 21 O -0.39 -12.63 8.39 -148.98 -1.25 -13.88 16 22 C 0.03 0.59 10.85 113.37 1.23 1.82 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.38 7.64 -2.39 -0.02 2.36 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.37 5.96 -2.39 -0.01 3.35 16 27 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 29 H 0.33 15.34 6.80 -89.70 -0.61 14.73 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.07 1.87 8.08 -2.38 -0.02 1.85 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -61.71 300.24 2.75 -58.96 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.40 Total: 22.15 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 3.71 Total: -28.75 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.14 Total: -84.91 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.25 Total: -13.88 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.71 2.75 -58.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251392617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.565 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds