Wall clock time and date at job start Mon Mar 30 2020 04:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 N 1.46506 * 109.46783 * 177.10465 * 3 2 1 5 5 C 1.36937 * 119.99639 * 95.16876 * 4 3 2 6 6 H 1.08008 * 119.99706 * 215.28926 * 5 4 3 7 7 C 1.38813 * 120.00425 * 35.30027 * 5 4 3 8 8 N 1.31618 * 119.99950 * 215.74232 * 7 5 4 9 9 Si 1.86800 * 119.99832 * 35.73679 * 7 5 4 10 10 H 1.48500 * 109.46885 * 89.61906 * 9 7 5 11 11 H 1.48499 * 109.46780 * 209.61522 * 9 7 5 12 12 H 1.48493 * 109.47457 * 329.61846 * 9 7 5 13 13 C 1.46493 * 119.99863 * 275.17014 * 4 3 2 14 14 H 1.09003 * 109.47227 * 359.97438 * 13 4 3 15 15 C 1.53001 * 109.47056 * 240.00271 * 13 4 3 16 16 C 1.52996 * 109.47387 * 180.02562 * 15 13 4 17 17 C 1.52991 * 109.47436 * 59.99433 * 16 15 13 18 18 C 1.53000 * 109.47510 * 300.00305 * 17 16 15 19 19 C 1.53001 * 109.47157 * 120.00370 * 13 4 3 20 20 H 1.08990 * 109.47094 * 59.99625 * 19 13 4 21 21 O 1.42904 * 109.46786 * 299.99630 * 19 13 4 22 22 H 1.09004 * 109.47647 * 184.77382 * 1 2 3 23 23 H 1.08999 * 109.47405 * 304.77887 * 1 2 3 24 24 H 1.09003 * 109.47524 * 64.77825 * 1 2 3 25 25 H 1.08999 * 109.46792 * 239.99747 * 2 1 3 26 26 H 1.08995 * 109.46889 * 120.00243 * 2 1 3 27 27 H 1.09001 * 109.47086 * 297.09882 * 3 2 1 28 28 H 1.08999 * 109.47388 * 57.10326 * 3 2 1 29 29 H 0.96993 * 120.00150 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46863 * 299.99930 * 15 13 4 31 31 H 1.08999 * 109.47725 * 59.99731 * 15 13 4 32 32 H 1.08999 * 109.47436 * 179.97438 * 16 15 13 33 33 H 1.09003 * 109.46774 * 299.99631 * 16 15 13 34 34 H 1.09000 * 109.47302 * 60.00723 * 17 16 15 35 35 H 1.09000 * 109.47543 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47469 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.47015 * 299.99995 * 18 17 16 38 38 H 0.96698 * 113.99769 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5033 1.4430 0.0698 5 6 4.2435 1.5302 -1.0790 6 1 5.1798 0.9979 -1.1599 7 6 3.7905 2.3028 -2.1396 8 7 4.0059 1.9118 -3.3778 9 14 2.8752 3.8974 -1.8095 10 1 3.8469 5.0170 -1.7222 11 1 1.9188 4.1572 -2.9154 12 1 2.1324 3.7858 -0.5286 13 6 4.1747 1.3503 1.3685 14 1 3.4279 1.2897 2.1601 15 6 5.0446 2.5906 1.5826 16 6 5.7463 2.4935 2.9387 17 6 6.6260 1.2421 2.9694 18 6 5.7561 0.0018 2.7553 19 6 5.0544 0.0988 1.3996 20 1 5.8011 0.1599 0.6081 21 8 4.2418 -1.0596 1.1997 22 1 -0.3634 -1.0241 0.0855 23 1 -0.3634 0.5862 0.8441 24 1 -0.3634 0.4379 -0.9297 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.7197 1.9411 -0.9149 28 1 1.6348 1.9711 0.8629 29 1 3.6891 2.4515 -4.1189 30 1 5.7915 2.6516 0.7910 31 1 4.4180 3.4822 1.5604 32 1 6.3664 3.3769 3.0911 33 1 4.9997 2.4322 3.7305 34 1 7.3726 1.3033 2.1776 35 1 7.1256 1.1727 3.9357 36 1 6.3829 -0.8897 2.7767 37 1 5.0095 -0.0595 3.5471 38 1 4.7344 -1.8917 1.2078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252440648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:21 Heat of formation + Delta-G solvation = -70.085312 kcal Electronic energy + Delta-G solvation = -17316.135919 eV Core-core repulsion = 14771.527585 eV Total energy + Delta-G solvation = -2544.608334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17517 -37.27875 -36.22050 -34.28479 -33.21726 -30.72612 -29.61529 -27.32491 -24.97294 -23.34121 -22.49501 -21.79890 -20.73652 -18.41063 -17.86283 -17.20422 -16.51427 -15.67774 -15.60135 -15.12582 -14.83766 -14.46796 -14.41669 -14.21059 -14.05063 -13.53215 -13.09796 -12.99352 -12.74222 -12.53998 -12.36824 -12.21287 -11.93952 -11.91089 -11.68468 -11.50642 -11.30978 -11.12432 -10.89822 -10.62827 -10.37520 -8.63744 -8.20841 -5.36585 1.35152 1.43371 1.51819 2.49454 2.97060 3.41123 3.48876 3.95766 4.15215 4.24376 4.29577 4.38281 4.44529 4.49157 4.60561 4.61740 4.67227 4.76663 4.79480 4.95438 4.97002 5.06678 5.18765 5.23472 5.25363 5.30148 5.34120 5.37672 5.49346 5.50954 5.63686 5.71854 6.01014 6.25015 7.08188 7.11432 7.77181 8.22322 9.00011 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.012106 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.707280 B = 2312.430151 C = 2890.876793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.148 3.852 4 N -0.600 5.600 5 C -0.239 4.239 6 H 0.035 0.965 7 C -0.009 4.009 8 N -0.931 5.931 9 Si 0.902 3.098 10 H -0.296 1.296 11 H -0.303 1.303 12 H -0.244 1.244 13 C 0.180 3.820 14 H 0.065 0.935 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.138 4.138 19 C 0.101 3.899 20 H 0.021 0.979 21 O -0.568 6.568 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.259 0.741 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -2.248 14.770 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.023 3.977 4 N -0.321 5.321 5 C -0.369 4.369 6 H 0.053 0.947 7 C -0.207 4.207 8 N -0.574 5.574 9 Si 0.729 3.271 10 H -0.224 1.224 11 H -0.230 1.230 12 H -0.167 1.167 13 C 0.073 3.927 14 H 0.083 0.917 15 C -0.162 4.162 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.176 4.176 19 C 0.040 3.960 20 H 0.039 0.961 21 O -0.374 6.374 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.148 -1.761 14.577 14.684 hybrid contribution 0.279 0.441 -0.915 1.054 sum 0.131 -1.320 13.662 13.726 Atomic orbital electron populations 1.21713 0.95046 1.01919 1.01361 1.21868 0.95375 0.98399 1.00830 1.21250 0.83331 0.95062 0.98069 1.44145 1.00907 1.85169 1.01878 1.18315 1.05264 1.21966 0.91360 0.94729 1.25859 0.99561 1.00749 0.94511 1.70204 1.50224 1.37723 0.99298 0.86485 0.78270 0.83864 0.78503 1.22387 1.23032 1.16715 1.20535 0.93415 0.91953 0.86757 0.91691 1.21865 0.98907 0.97610 0.97771 1.21540 0.99018 0.98517 0.95881 1.21474 0.97561 0.93687 1.02330 1.22181 0.99365 0.99150 0.96885 1.22155 0.92136 0.86695 0.94986 0.96056 1.86571 1.38465 1.16479 1.95850 0.91843 0.91817 0.93878 0.95543 0.91677 0.95290 0.93478 0.93174 0.93768 0.93306 0.90926 0.90893 0.92973 0.89424 0.90698 0.90791 0.77692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.91 71.98 0.71 -3.85 16 2 C -0.12 -5.07 6.14 30.59 0.19 -4.88 16 3 C 0.15 6.63 3.89 86.38 0.34 6.96 16 4 N -0.60 -28.60 1.89 -678.02 -1.28 -29.89 16 5 C -0.24 -13.59 8.53 84.03 0.72 -12.87 16 6 H 0.04 2.19 6.98 -2.91 -0.02 2.17 16 7 C -0.01 -0.56 4.96 84.86 0.42 -0.14 16 8 N -0.93 -58.94 13.97 21.65 0.30 -58.64 16 9 Si 0.90 45.87 26.43 68.60 1.81 47.68 16 10 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 11 H -0.30 -15.59 7.11 99.48 0.71 -14.89 16 12 H -0.24 -11.48 5.82 99.48 0.58 -10.90 16 13 C 0.18 7.01 2.33 44.99 0.10 7.12 16 14 H 0.06 2.39 7.86 -2.39 -0.02 2.37 16 15 C -0.12 -4.39 5.17 30.59 0.16 -4.23 16 16 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 17 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 18 C -0.14 -3.48 5.54 30.58 0.17 -3.31 16 19 C 0.10 3.57 2.76 30.58 0.08 3.65 16 20 H 0.02 0.90 6.98 -2.39 -0.02 0.88 16 21 O -0.57 -20.28 11.90 -148.98 -1.77 -22.05 16 22 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 2.59 6.94 -2.39 -0.02 2.57 16 27 H 0.03 1.42 4.51 -2.39 -0.01 1.40 16 28 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.04 1.82 7.66 -2.39 -0.02 1.80 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.38 10.07 9.08 -74.06 -0.67 9.39 16 Total: -1.00 -67.54 291.24 2.53 -65.01 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.22 Total: 14.58 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 3.25 Total: -16.69 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -0.98 Total: -88.53 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.77 Total: -22.05 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.81 Total: 47.68 kcal Total: -67.54 2.53 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.080 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds