Wall clock time and date at job start Mon Mar 30 2020 03:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47183 * 2 1 4 4 N 1.46907 * 109.46915 * 119.99746 * 2 1 3 5 5 C 1.46848 * 110.99958 * 304.21148 * 4 2 1 6 6 C 1.53032 * 109.52348 * 174.16258 * 5 4 2 7 7 C 1.53123 * 109.27911 * 59.17573 * 6 5 4 8 8 C 1.53123 * 109.16001 * 302.34817 * 7 6 5 9 9 C 1.46842 * 110.99676 * 180.02562 * 4 2 1 10 10 H 1.09003 * 109.45753 * 65.83035 * 9 4 2 11 11 C 1.52997 * 109.46384 * 305.85242 * 9 4 2 12 12 O 1.42901 * 109.47279 * 294.95011 * 11 9 4 13 13 C 1.34931 * 116.99789 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00504 * 359.97438 * 13 12 11 15 15 C 1.38638 * 119.99430 * 180.02562 * 13 12 11 16 16 N 1.31578 * 120.00306 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99531 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47299 * 60.00027 * 17 15 13 19 19 H 1.48501 * 109.47137 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47418 * 299.99952 * 17 15 13 21 21 H 1.08998 * 109.47312 * 300.00171 * 1 2 3 22 22 H 1.08998 * 109.47443 * 60.00260 * 1 2 3 23 23 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46842 * 239.99581 * 2 1 3 25 25 H 1.09004 * 109.47159 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46768 * 300.00191 * 3 2 1 27 27 H 1.08998 * 109.47136 * 59.99722 * 3 2 1 28 28 H 1.09003 * 109.46014 * 294.17985 * 5 4 2 29 29 H 1.08991 * 109.46260 * 54.15359 * 5 4 2 30 30 H 1.08996 * 109.50421 * 179.11872 * 6 5 4 31 31 H 1.08997 * 109.50237 * 299.24201 * 6 5 4 32 32 H 1.09000 * 109.52311 * 182.44010 * 7 6 5 33 33 H 1.09007 * 109.52076 * 62.25123 * 7 6 5 34 34 H 1.09000 * 109.50367 * 297.70910 * 8 7 6 35 35 H 1.09006 * 109.50264 * 177.59249 * 8 7 6 36 36 H 1.08998 * 109.47307 * 54.95161 * 11 9 4 37 37 H 1.09001 * 109.47581 * 174.94890 * 11 9 4 38 38 H 0.96997 * 119.99989 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4683 -0.0871 2.4186 6 6 1.8810 -0.9195 3.6346 7 6 3.4091 -0.9735 3.7153 8 6 3.9605 -1.5631 2.4141 9 6 3.4875 -0.7115 1.2337 10 1 3.8613 0.3062 1.3468 11 6 4.0202 -1.3083 -0.0705 12 8 3.6273 -2.6791 -0.1625 13 6 4.0193 -3.3561 -1.2619 14 1 4.6028 -2.8592 -2.0228 15 6 3.6720 -4.6895 -1.4152 16 7 2.9606 -5.2949 -0.4885 17 14 4.2140 -5.6266 -2.9376 18 1 5.6970 -5.6311 -3.0143 19 1 3.7187 -7.0245 -2.8608 20 1 3.6578 -4.9696 -4.1475 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.8520 0.9275 2.5257 29 1 0.3809 -0.0587 2.3501 30 1 1.4847 -0.4612 4.5407 31 1 1.4860 -1.9304 3.5346 32 1 3.7076 -1.6012 4.5549 33 1 3.8024 0.0336 3.8543 34 1 3.5982 -2.5842 2.2950 35 1 5.0500 -1.5646 2.4483 36 1 3.6116 -0.7556 -0.9165 37 1 5.1080 -1.2404 -0.0836 38 1 2.7180 -6.2279 -0.5957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259941205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:34 Heat of formation + Delta-G solvation = -37.259683 kcal Electronic energy + Delta-G solvation = -17122.396424 eV Core-core repulsion = 14579.211516 eV Total energy + Delta-G solvation = -2543.184908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36860 -35.82916 -34.68647 -31.98540 -30.69683 -29.75300 -26.95124 -25.83778 -24.02730 -23.71880 -20.97784 -20.12960 -18.40625 -17.35076 -15.99715 -15.03097 -14.95943 -14.18570 -14.01622 -13.96003 -13.43872 -13.17998 -13.10009 -12.64037 -12.37960 -12.08214 -11.70099 -11.37113 -11.27546 -11.05776 -10.94173 -10.87021 -10.66785 -10.42083 -10.21944 -10.17978 -9.78393 -9.65846 -9.29844 -8.89578 -7.81780 -7.57882 -5.81843 -3.44232 3.37376 3.39474 3.42318 4.33363 4.41795 5.17512 5.19026 5.30224 5.36122 5.47862 5.50215 5.56562 5.65334 5.73419 5.75916 5.86935 5.90154 6.00840 6.03828 6.06767 6.16381 6.25306 6.32694 6.39745 6.47830 6.49735 6.61700 6.65679 6.71491 6.75983 6.79871 7.21606 7.57030 7.75887 7.79730 8.54900 9.61022 10.33999 11.38626 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.008365 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.973856 B = 3346.670611 C = 3737.462162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 C -0.186 4.186 4 N -0.506 5.506 5 C 0.052 3.948 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.108 4.108 9 C 0.097 3.903 10 H 0.036 0.964 11 C 0.075 3.925 12 O -0.272 6.272 13 C -0.361 4.361 14 H 0.056 0.944 15 C 0.025 3.975 16 N -0.883 5.883 17 Si 0.919 3.081 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.280 1.280 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.023 0.977 37 H 0.020 0.980 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 11.679 4.952 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.245 4.245 4 N -0.230 5.230 5 C -0.076 4.076 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.145 4.145 9 C -0.011 4.011 10 H 0.053 0.947 11 C -0.003 4.003 12 O -0.187 6.187 13 C -0.440 4.440 14 H 0.074 0.926 15 C -0.173 4.173 16 N -0.527 5.527 17 Si 0.746 3.254 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.206 1.206 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.487 10.932 5.116 12.323 hybrid contribution 0.775 0.574 -0.999 1.389 sum -1.712 11.506 4.116 12.340 Atomic orbital electron populations 1.21871 0.94956 1.02590 1.00599 1.21757 0.95211 0.91383 0.95178 1.22505 1.01534 0.98945 1.01482 1.62012 1.07673 1.52673 1.00637 1.22137 0.99729 0.95096 0.90679 1.21569 0.96093 1.01423 0.96287 1.21593 0.95739 0.99917 0.98389 1.21509 0.99116 1.01998 0.91911 1.21620 0.87167 0.96069 0.96250 0.94670 1.22206 0.95717 0.88289 0.94066 1.85754 1.74918 1.16756 1.41227 1.20746 1.32234 0.93487 0.97549 0.92632 1.24862 0.98354 0.96020 0.98067 1.70022 1.38573 1.10860 1.33196 0.86150 0.78382 0.79038 0.81787 1.20609 1.20988 1.20590 0.93136 0.92881 0.91461 0.88724 0.92632 0.92583 0.92997 0.95865 0.90861 0.92572 0.90754 0.92324 0.93327 0.88837 0.92461 0.95897 0.96206 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.84 37.16 0.33 -1.78 16 2 C 0.07 1.23 2.50 -67.71 -0.17 1.07 16 3 C -0.19 -2.60 8.48 37.15 0.32 -2.28 16 4 N -0.51 -9.33 4.47 -218.76 -0.98 -10.31 16 5 C 0.05 0.79 4.67 -3.84 -0.02 0.77 16 6 C -0.12 -1.71 6.09 -26.65 -0.16 -1.88 16 7 C -0.12 -1.79 6.00 -26.60 -0.16 -1.95 16 8 C -0.11 -2.02 5.19 -26.65 -0.14 -2.16 16 9 C 0.10 1.84 1.66 -67.72 -0.11 1.73 16 10 H 0.04 0.61 6.63 -51.93 -0.34 0.26 16 11 C 0.08 1.70 5.27 37.16 0.20 1.89 16 12 O -0.27 -7.77 8.83 -16.51 -0.15 -7.92 16 13 C -0.36 -10.73 9.89 30.88 0.31 -10.42 16 14 H 0.06 1.57 7.77 -52.49 -0.41 1.16 16 15 C 0.03 0.75 5.49 -17.51 -0.10 0.66 16 16 N -0.88 -28.01 13.67 55.48 0.76 -27.25 16 17 Si 0.92 22.49 29.55 -169.99 -5.02 17.47 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.05 0.66 6.22 -51.93 -0.32 0.34 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.09 1.88 6.10 -51.93 -0.32 1.57 16 25 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 26 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.05 0.67 6.63 -51.93 -0.34 0.33 16 28 H 0.02 0.33 6.71 -51.93 -0.35 -0.02 16 29 H 0.07 1.05 5.90 -51.93 -0.31 0.74 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.15 7.54 -51.93 -0.39 1.76 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.51 6.02 -51.93 -0.31 0.20 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -32.23 289.58 -7.11 -39.34 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.37 Total: -1.34 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.29 Total: -14.36 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.22 Total: -37.56 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.15 Total: -7.92 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.23 -7.11 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.080 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds