Wall clock time and date at job start Mon Mar 30 2020 03:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47183 * 2 1 4 4 N 1.46907 * 109.46915 * 119.99746 * 2 1 3 5 5 C 1.46848 * 110.99958 * 304.21148 * 4 2 1 6 6 C 1.53032 * 109.52348 * 174.16258 * 5 4 2 7 7 C 1.53123 * 109.27911 * 59.17573 * 6 5 4 8 8 C 1.53123 * 109.16001 * 302.34817 * 7 6 5 9 9 C 1.46842 * 110.99676 * 180.02562 * 4 2 1 10 10 H 1.09003 * 109.45753 * 65.83035 * 9 4 2 11 11 C 1.52997 * 109.46384 * 305.85242 * 9 4 2 12 12 O 1.42901 * 109.47279 * 294.95011 * 11 9 4 13 13 C 1.34931 * 116.99789 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00504 * 359.97438 * 13 12 11 15 15 C 1.38638 * 119.99430 * 180.02562 * 13 12 11 16 16 N 1.31578 * 120.00306 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99531 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47299 * 60.00027 * 17 15 13 19 19 H 1.48501 * 109.47137 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47418 * 299.99952 * 17 15 13 21 21 H 1.08998 * 109.47312 * 300.00171 * 1 2 3 22 22 H 1.08998 * 109.47443 * 60.00260 * 1 2 3 23 23 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46842 * 239.99581 * 2 1 3 25 25 H 1.09004 * 109.47159 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46768 * 300.00191 * 3 2 1 27 27 H 1.08998 * 109.47136 * 59.99722 * 3 2 1 28 28 H 1.09003 * 109.46014 * 294.17985 * 5 4 2 29 29 H 1.08991 * 109.46260 * 54.15359 * 5 4 2 30 30 H 1.08996 * 109.50421 * 179.11872 * 6 5 4 31 31 H 1.08997 * 109.50237 * 299.24201 * 6 5 4 32 32 H 1.09000 * 109.52311 * 182.44010 * 7 6 5 33 33 H 1.09007 * 109.52076 * 62.25123 * 7 6 5 34 34 H 1.09000 * 109.50367 * 297.70910 * 8 7 6 35 35 H 1.09006 * 109.50264 * 177.59249 * 8 7 6 36 36 H 1.08998 * 109.47307 * 54.95161 * 11 9 4 37 37 H 1.09001 * 109.47581 * 174.94890 * 11 9 4 38 38 H 0.96997 * 119.99989 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4683 -0.0871 2.4186 6 6 1.8810 -0.9195 3.6346 7 6 3.4091 -0.9735 3.7153 8 6 3.9605 -1.5631 2.4141 9 6 3.4875 -0.7115 1.2337 10 1 3.8613 0.3062 1.3468 11 6 4.0202 -1.3083 -0.0705 12 8 3.6273 -2.6791 -0.1625 13 6 4.0193 -3.3561 -1.2619 14 1 4.6028 -2.8592 -2.0228 15 6 3.6720 -4.6895 -1.4152 16 7 2.9606 -5.2949 -0.4885 17 14 4.2140 -5.6266 -2.9376 18 1 5.6970 -5.6311 -3.0143 19 1 3.7187 -7.0245 -2.8608 20 1 3.6578 -4.9696 -4.1475 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.8520 0.9275 2.5257 29 1 0.3809 -0.0587 2.3501 30 1 1.4847 -0.4612 4.5407 31 1 1.4860 -1.9304 3.5346 32 1 3.7076 -1.6012 4.5549 33 1 3.8024 0.0336 3.8543 34 1 3.5982 -2.5842 2.2950 35 1 5.0500 -1.5646 2.4483 36 1 3.6116 -0.7556 -0.9165 37 1 5.1080 -1.2404 -0.0836 38 1 2.7180 -6.2279 -0.5957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:34 Heat of formation + Delta-G solvation = -59.295145 kcal Electronic energy + Delta-G solvation = -17123.351953 eV Core-core repulsion = 14579.211516 eV Total energy + Delta-G solvation = -2544.140437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76683 -37.85239 -35.96562 -34.02827 -32.41678 -31.04176 -28.11079 -27.60217 -26.10223 -25.07250 -22.44314 -21.44252 -19.91291 -19.45644 -17.51600 -16.93654 -16.46889 -15.97936 -15.37816 -15.28258 -15.07661 -14.62295 -14.45918 -14.31815 -13.88340 -13.47654 -13.30973 -12.84420 -12.77094 -12.66582 -12.55646 -12.27908 -12.11291 -11.98108 -11.74822 -11.58669 -11.39312 -11.30754 -11.01406 -10.73966 -10.04003 -8.90190 -8.09790 -5.77866 1.38622 1.46190 1.53000 2.35866 3.01672 3.21893 3.74718 3.92368 3.99522 4.04568 4.11819 4.25898 4.35280 4.45570 4.47611 4.52336 4.68097 4.73410 4.76376 4.77260 4.82318 4.91883 4.98270 4.99129 5.09110 5.11991 5.17453 5.25051 5.34774 5.35563 5.40636 5.45954 5.67109 6.26464 6.40616 6.48559 7.32210 8.18121 9.14130 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.008365 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.973856 B = 3346.670611 C = 3737.462162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.070 3.930 3 C -0.174 4.174 4 N -0.539 5.539 5 C 0.052 3.948 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.104 3.896 10 H 0.063 0.937 11 C 0.069 3.931 12 O -0.306 6.306 13 C -0.378 4.378 14 H 0.063 0.937 15 C -0.039 4.039 16 N -0.932 5.932 17 Si 0.998 3.002 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.267 1.267 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 13.626 5.099 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.233 4.233 4 N -0.264 5.264 5 C -0.075 4.075 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.004 4.004 10 H 0.081 0.919 11 C -0.008 4.008 12 O -0.221 6.221 13 C -0.458 4.458 14 H 0.081 0.919 15 C -0.232 4.232 16 N -0.577 5.577 17 Si 0.821 3.179 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.192 1.192 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.448 12.913 5.264 14.158 hybrid contribution 0.765 0.027 -1.024 1.279 sum -1.683 12.940 4.240 13.721 Atomic orbital electron populations 1.21816 0.93463 1.01384 1.02650 1.21704 0.96409 0.92700 0.93054 1.22373 1.00993 0.96766 1.03158 1.61927 1.07235 1.54724 1.02495 1.22218 1.00238 0.95870 0.89148 1.21592 0.95830 1.00109 0.97777 1.21550 0.95896 1.01166 0.96199 1.21434 0.99266 0.99260 0.94430 1.21521 0.88068 0.96795 0.93994 0.91922 1.22484 0.95903 0.85837 0.96585 1.85712 1.75601 1.19644 1.41159 1.21253 1.32170 0.94253 0.98084 0.91920 1.26084 0.98305 0.96932 1.01871 1.70216 1.40316 1.11283 1.35903 0.84935 0.78550 0.77197 0.77218 1.19078 1.20457 1.19173 0.90853 0.91006 0.94279 0.93004 0.93317 0.91056 0.91107 0.93640 0.89895 0.89035 0.93766 0.91370 0.90627 0.94304 0.92264 0.95662 0.96146 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.84 71.98 0.64 -3.24 16 2 C 0.07 2.32 2.50 44.91 0.11 2.43 16 3 C -0.17 -4.43 8.48 71.98 0.61 -3.82 16 4 N -0.54 -19.76 4.47 -846.04 -3.78 -23.54 16 5 C 0.05 1.47 4.67 86.32 0.40 1.88 16 6 C -0.12 -3.20 6.09 30.65 0.19 -3.01 16 7 C -0.11 -3.13 6.00 30.68 0.18 -2.95 16 8 C -0.11 -4.03 5.19 30.65 0.16 -3.87 16 9 C 0.10 3.95 1.66 44.94 0.07 4.02 16 10 H 0.06 2.03 6.63 -2.39 -0.02 2.01 16 11 C 0.07 3.22 5.27 71.98 0.38 3.60 16 12 O -0.31 -18.31 8.83 -82.00 -0.72 -19.04 16 13 C -0.38 -23.21 9.89 67.92 0.67 -22.54 16 14 H 0.06 3.62 7.77 -2.91 -0.02 3.59 16 15 C -0.04 -2.35 5.49 84.83 0.47 -1.89 16 16 N -0.93 -61.27 13.67 21.61 0.30 -60.97 16 17 Si 1.00 46.76 29.55 68.60 2.03 48.79 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H 0.07 1.74 6.22 -2.39 -0.01 1.72 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.05 2.14 6.10 -2.39 -0.01 2.13 16 25 H 0.05 1.29 6.54 -2.39 -0.02 1.28 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.07 1.55 6.63 -2.39 -0.02 1.53 16 28 H 0.05 1.10 6.71 -2.39 -0.02 1.08 16 29 H 0.08 2.16 5.90 -2.39 -0.01 2.15 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.04 1.89 7.54 -2.39 -0.02 1.87 16 35 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.03 1.15 6.02 -2.39 -0.01 1.14 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -73.00 289.58 2.72 -70.29 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.01 Total: 13.86 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.88 Total: -29.38 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.48 Total: -84.51 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.72 Total: -19.04 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.00 2.72 -70.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.991 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds