Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47011 * 2 1 4 4 O 1.42895 * 109.47495 * 119.99910 * 2 1 3 5 5 C 1.42906 * 113.99812 * 120.05847 * 4 2 1 6 6 C 1.50697 * 109.50553 * 303.61192 * 5 4 2 7 7 H 1.08001 * 119.99926 * 120.05899 * 6 5 4 8 8 C 1.37874 * 120.00031 * 300.05833 * 6 5 4 9 9 N 1.31522 * 119.99775 * 6.93539 * 8 6 5 10 10 Si 1.86796 * 120.00363 * 186.93344 * 8 6 5 11 11 H 1.48498 * 109.47234 * 89.99564 * 10 8 6 12 12 H 1.48491 * 109.47593 * 210.00223 * 10 8 6 13 13 H 1.48500 * 109.46786 * 330.00260 * 10 8 6 14 14 C 1.53121 * 109.50006 * 63.72974 * 5 4 2 15 15 C 1.53125 * 109.15358 * 62.27954 * 14 5 4 16 16 C 1.53036 * 109.27790 * 57.66984 * 15 14 5 17 17 N 1.46852 * 109.51587 * 300.80345 * 16 15 14 18 18 C 1.46896 * 111.00259 * 185.84631 * 17 16 15 19 19 C 1.46854 * 111.19456 * 61.74693 * 17 16 15 20 20 H 1.09001 * 109.47171 * 299.99692 * 1 2 3 21 21 H 1.08992 * 109.47583 * 59.99679 * 1 2 3 22 22 H 1.08999 * 109.46825 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47171 * 240.00308 * 2 1 3 24 24 H 1.09000 * 109.47057 * 58.34803 * 3 2 1 25 25 H 1.08998 * 109.46947 * 178.34679 * 3 2 1 26 26 H 1.09001 * 109.47349 * 298.34965 * 3 2 1 27 27 H 0.97004 * 119.99763 * 180.02562 * 9 8 6 28 28 H 1.09003 * 109.52423 * 182.18592 * 14 5 4 29 29 H 1.08999 * 109.52320 * 302.37912 * 14 5 4 30 30 H 1.08996 * 109.51254 * 297.72728 * 15 14 5 31 31 H 1.08996 * 109.49404 * 177.60422 * 15 14 5 32 32 H 1.09000 * 109.46453 * 180.79639 * 16 15 14 33 33 H 1.09004 * 109.46648 * 60.81238 * 16 15 14 34 34 H 1.08998 * 109.47166 * 56.04537 * 18 17 16 35 35 H 1.09000 * 109.47287 * 176.04883 * 18 17 16 36 36 H 1.09006 * 109.46839 * 296.04376 * 18 17 16 37 37 H 1.09004 * 109.45899 * 58.27523 * 19 17 16 38 38 H 1.09003 * 109.45939 * 178.24063 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.8167 -1.8171 0.8875 6 6 2.0482 -2.7780 0.0174 7 1 2.4291 -3.0475 -0.9567 8 6 0.8589 -3.3131 0.4647 9 7 0.3259 -2.8838 1.5879 10 14 0.0045 -4.6477 -0.5242 11 1 0.4851 -5.9797 -0.0770 12 1 -1.4629 -4.5555 -0.3162 13 1 0.3122 -4.4690 -1.9660 14 6 4.0908 -1.3759 0.1618 15 6 4.8940 -0.4471 1.0766 16 6 5.2132 -1.1771 2.3832 17 7 3.9621 -1.5778 3.0396 18 6 4.2245 -2.1583 4.3632 19 6 3.1959 -2.5073 2.1997 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6526 1.9649 0.8748 25 1 3.1296 1.4427 0.0296 26 1 1.7010 1.9478 -0.9044 27 1 -0.5107 -3.2605 1.9028 28 1 4.6908 -2.2516 -0.0858 29 1 3.8241 -0.8455 -0.7524 30 1 4.3085 0.4465 1.2927 31 1 5.8229 -0.1635 0.5819 32 1 5.7729 -0.5137 3.0425 33 1 5.8101 -2.0633 2.1677 34 1 4.7894 -1.4474 4.9663 35 1 3.2783 -2.3816 4.8561 36 1 4.8005 -3.0767 4.2494 37 1 3.8025 -3.3872 1.9852 38 1 2.2905 -2.8100 2.7258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = -47.663128 kcal Electronic energy + Delta-G solvation = -17759.002156 eV Core-core repulsion = 15215.366121 eV Total energy + Delta-G solvation = -2543.636035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.58668 -35.97627 -32.85795 -32.11391 -30.97720 -28.60847 -26.19679 -25.94096 -24.94697 -22.01518 -21.18604 -19.90536 -18.37207 -16.54739 -15.29725 -14.81229 -14.37351 -14.08342 -13.77564 -13.62167 -13.12676 -12.54360 -12.26823 -12.13857 -11.88256 -11.57963 -11.32847 -11.27054 -11.14835 -10.98546 -10.74545 -10.65814 -10.43835 -10.20633 -10.03777 -9.87131 -9.47487 -9.33741 -8.50201 -8.45227 -7.66045 -7.33456 -5.96080 -4.15110 3.26453 3.34943 3.37333 4.38233 4.83318 5.18772 5.45950 5.67156 5.73891 5.88434 5.99636 6.05185 6.10325 6.20295 6.24480 6.34920 6.41453 6.50552 6.51339 6.56383 6.69335 6.74856 6.76571 6.79465 6.91669 7.01897 7.04456 7.31070 7.37515 7.58088 7.74382 7.93808 8.00409 8.08693 8.32102 8.84478 9.29421 9.59179 11.01979 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.013268 C = 0.010235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.269285 B = 2109.769783 C = 2735.105384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.100 3.900 3 C -0.160 4.160 4 O -0.343 6.343 5 C 0.250 3.750 6 C -0.558 4.558 7 H 0.054 0.946 8 C 0.086 3.914 9 N -0.844 5.844 10 Si 0.876 3.124 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.140 4.140 15 C -0.114 4.114 16 C 0.062 3.938 17 N -0.535 5.535 18 C 0.031 3.969 19 C 0.081 3.919 20 H 0.041 0.959 21 H 0.030 0.970 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.259 0.741 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.011 0.989 37 H 0.016 0.984 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 3.360 0.160 6.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.041 3.959 3 C -0.218 4.218 4 O -0.262 6.262 5 C 0.211 3.789 6 C -0.597 4.597 7 H 0.073 0.927 8 C -0.120 4.120 9 N -0.479 5.479 10 Si 0.704 3.296 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.178 4.178 15 C -0.151 4.151 16 C -0.067 4.067 17 N -0.259 5.259 18 C -0.118 4.118 19 C -0.045 4.045 20 H 0.061 0.939 21 H 0.049 0.951 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.592 3.822 0.561 6.001 hybrid contribution 0.061 -1.653 -0.938 1.901 sum 4.654 2.169 -0.376 5.148 Atomic orbital electron populations 1.21959 0.97049 1.02879 0.98485 1.21380 0.93016 0.90061 0.91485 1.22233 1.00723 0.98620 1.00222 1.87983 1.68048 1.42226 1.27924 1.18912 0.85434 0.84206 0.90350 1.21470 1.06901 1.28231 1.03051 0.92730 1.24947 0.96671 0.95529 0.94856 1.70094 1.18040 1.39342 1.20425 0.86864 0.78925 0.82913 0.80905 1.20651 1.21153 1.19927 1.22270 0.99190 0.98038 0.98346 1.21563 0.98697 0.99920 0.94940 1.21983 0.91196 0.97659 0.95828 1.61999 1.18165 1.42968 1.02795 1.22267 1.00575 0.96712 0.92267 1.22166 0.96927 0.90900 0.94548 0.93937 0.95113 0.90805 0.92523 0.93165 0.93213 0.93714 0.93086 0.93296 0.92970 0.90809 0.93668 0.92492 0.96469 0.92798 0.91711 0.97077 0.96562 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.56 37.16 0.36 -2.82 16 2 C 0.10 2.20 2.24 -26.73 -0.06 2.14 16 3 C -0.16 -2.97 9.53 37.16 0.35 -2.61 16 4 O -0.34 -8.52 8.19 -35.23 -0.29 -8.80 16 5 C 0.25 6.03 0.29 -91.69 -0.03 6.01 16 6 C -0.56 -14.55 6.65 -34.44 -0.23 -14.77 16 7 H 0.05 1.44 7.76 -52.49 -0.41 1.03 16 8 C 0.09 2.25 4.23 -17.82 -0.08 2.18 16 9 N -0.84 -22.71 10.40 55.43 0.58 -22.14 16 10 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C -0.14 -2.98 4.57 -26.60 -0.12 -3.10 16 15 C -0.11 -2.12 5.90 -26.65 -0.16 -2.28 16 16 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 17 N -0.53 -11.24 4.79 -242.95 -1.16 -12.40 16 18 C 0.03 0.54 9.59 60.06 0.58 1.12 16 19 C 0.08 1.94 4.20 -3.83 -0.02 1.92 16 20 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.80 6.42 -51.93 -0.33 1.46 16 23 H 0.06 1.31 5.76 -51.93 -0.30 1.01 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.89 6.60 -51.93 -0.34 0.55 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.09 6.70 -51.93 -0.35 0.74 16 30 H 0.07 1.46 6.27 -51.93 -0.33 1.13 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 2.75 6.37 -51.93 -0.33 2.42 16 LS Contribution 288.26 15.07 4.34 4.34 Total: -1.00 -27.15 288.26 -7.56 -34.72 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.59 Total: 0.01 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 0.58 Total: -11.10 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.59 Total: -34.54 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.29 Total: -8.80 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.15 -7.56 -34.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.946 kcal (2) G-P(sol) polarization free energy of solvation -27.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds