Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47011 * 2 1 4 4 O 1.42895 * 109.47495 * 119.99910 * 2 1 3 5 5 C 1.42906 * 113.99812 * 120.05847 * 4 2 1 6 6 C 1.50697 * 109.50553 * 303.61192 * 5 4 2 7 7 H 1.08001 * 119.99926 * 120.05899 * 6 5 4 8 8 C 1.37874 * 120.00031 * 300.05833 * 6 5 4 9 9 N 1.31522 * 119.99775 * 6.93539 * 8 6 5 10 10 Si 1.86796 * 120.00363 * 186.93344 * 8 6 5 11 11 H 1.48498 * 109.47234 * 89.99564 * 10 8 6 12 12 H 1.48491 * 109.47593 * 210.00223 * 10 8 6 13 13 H 1.48500 * 109.46786 * 330.00260 * 10 8 6 14 14 C 1.53121 * 109.50006 * 63.72974 * 5 4 2 15 15 C 1.53125 * 109.15358 * 62.27954 * 14 5 4 16 16 C 1.53036 * 109.27790 * 57.66984 * 15 14 5 17 17 N 1.46852 * 109.51587 * 300.80345 * 16 15 14 18 18 C 1.46896 * 111.00259 * 185.84631 * 17 16 15 19 19 C 1.46854 * 111.19456 * 61.74693 * 17 16 15 20 20 H 1.09001 * 109.47171 * 299.99692 * 1 2 3 21 21 H 1.08992 * 109.47583 * 59.99679 * 1 2 3 22 22 H 1.08999 * 109.46825 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47171 * 240.00308 * 2 1 3 24 24 H 1.09000 * 109.47057 * 58.34803 * 3 2 1 25 25 H 1.08998 * 109.46947 * 178.34679 * 3 2 1 26 26 H 1.09001 * 109.47349 * 298.34965 * 3 2 1 27 27 H 0.97004 * 119.99763 * 180.02562 * 9 8 6 28 28 H 1.09003 * 109.52423 * 182.18592 * 14 5 4 29 29 H 1.08999 * 109.52320 * 302.37912 * 14 5 4 30 30 H 1.08996 * 109.51254 * 297.72728 * 15 14 5 31 31 H 1.08996 * 109.49404 * 177.60422 * 15 14 5 32 32 H 1.09000 * 109.46453 * 180.79639 * 16 15 14 33 33 H 1.09004 * 109.46648 * 60.81238 * 16 15 14 34 34 H 1.08998 * 109.47166 * 56.04537 * 18 17 16 35 35 H 1.09000 * 109.47287 * 176.04883 * 18 17 16 36 36 H 1.09006 * 109.46839 * 296.04376 * 18 17 16 37 37 H 1.09004 * 109.45899 * 58.27523 * 19 17 16 38 38 H 1.09003 * 109.45939 * 178.24063 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.8167 -1.8171 0.8875 6 6 2.0482 -2.7780 0.0174 7 1 2.4291 -3.0475 -0.9567 8 6 0.8589 -3.3131 0.4647 9 7 0.3259 -2.8838 1.5879 10 14 0.0045 -4.6477 -0.5242 11 1 0.4851 -5.9797 -0.0770 12 1 -1.4629 -4.5555 -0.3162 13 1 0.3122 -4.4690 -1.9660 14 6 4.0908 -1.3759 0.1618 15 6 4.8940 -0.4471 1.0766 16 6 5.2132 -1.1771 2.3832 17 7 3.9621 -1.5778 3.0396 18 6 4.2245 -2.1583 4.3632 19 6 3.1959 -2.5073 2.1997 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6526 1.9649 0.8748 25 1 3.1296 1.4427 0.0296 26 1 1.7010 1.9478 -0.9044 27 1 -0.5107 -3.2605 1.9028 28 1 4.6908 -2.2516 -0.0858 29 1 3.8241 -0.8455 -0.7524 30 1 4.3085 0.4465 1.2927 31 1 5.8229 -0.1635 0.5819 32 1 5.7729 -0.5137 3.0425 33 1 5.8101 -2.0633 2.1677 34 1 4.7894 -1.4474 4.9663 35 1 3.2783 -2.3816 4.8561 36 1 4.8005 -3.0767 4.2494 37 1 3.8025 -3.3872 1.9852 38 1 2.2905 -2.8100 2.7258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = -64.394841 kcal Electronic energy + Delta-G solvation = -17759.727698 eV Core-core repulsion = 15215.366121 eV Total energy + Delta-G solvation = -2544.361577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29834 -37.65603 -34.74001 -33.77552 -32.70197 -30.38809 -27.80366 -27.54137 -26.80989 -23.65048 -22.87097 -21.61647 -20.08597 -18.47845 -16.98063 -16.70902 -16.03559 -15.76170 -15.45260 -15.26361 -14.79614 -14.18884 -13.93555 -13.86689 -13.45585 -13.16350 -12.99454 -12.89987 -12.84371 -12.69330 -12.52080 -12.39692 -12.17542 -12.04815 -11.70053 -11.47073 -11.21648 -11.07007 -10.47734 -10.28285 -9.48526 -8.94842 -7.95621 -6.20031 1.38368 1.42839 1.49007 2.43857 3.12571 3.39759 3.67335 4.19601 4.22006 4.34989 4.49829 4.55058 4.61389 4.67116 4.68556 4.80803 4.86997 4.94715 4.95920 5.00186 5.02513 5.04989 5.14911 5.21520 5.26664 5.30038 5.40411 5.60234 5.65417 5.74901 5.83752 6.07227 6.21698 6.46306 6.51424 6.85417 7.40550 7.63442 9.00495 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.013268 C = 0.010235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.269285 B = 2109.769783 C = 2735.105384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.094 3.906 3 C -0.149 4.149 4 O -0.363 6.363 5 C 0.243 3.757 6 C -0.571 4.571 7 H 0.043 0.957 8 C 0.053 3.947 9 N -0.864 5.864 10 Si 0.926 3.074 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C -0.136 4.136 15 C -0.107 4.107 16 C 0.060 3.940 17 N -0.552 5.552 18 C 0.031 3.969 19 C 0.092 3.908 20 H 0.037 0.963 21 H 0.059 0.941 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.256 0.744 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.004 0.996 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 4.423 -0.090 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.035 3.965 3 C -0.206 4.206 4 O -0.282 6.282 5 C 0.204 3.796 6 C -0.609 4.609 7 H 0.061 0.939 8 C -0.151 4.151 9 N -0.499 5.499 10 Si 0.752 3.248 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.174 4.174 15 C -0.145 4.145 16 C -0.068 4.068 17 N -0.276 5.276 18 C -0.117 4.117 19 C -0.035 4.035 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.022 0.978 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.781 4.888 0.309 7.577 hybrid contribution -0.305 -1.975 -0.861 2.176 sum 5.476 2.913 -0.552 6.227 Atomic orbital electron populations 1.21898 0.97142 1.01145 0.99659 1.21549 0.93066 0.91815 0.90053 1.22105 1.01028 0.96005 1.01512 1.87929 1.68558 1.42375 1.29365 1.18941 0.86422 0.83855 0.90384 1.21705 1.07393 1.28893 1.02939 0.93853 1.25431 0.97207 0.96919 0.95548 1.70205 1.18095 1.40166 1.21484 0.86087 0.77980 0.80908 0.79782 1.20479 1.21093 1.19805 1.22158 0.98173 0.98490 0.98574 1.21532 0.99506 0.98683 0.94752 1.22089 0.90218 0.98290 0.96165 1.61936 1.19673 1.42383 1.03655 1.22307 1.00604 0.97807 0.90961 1.21845 0.95854 0.91107 0.94737 0.94408 0.92167 0.93968 0.94046 0.93244 0.92621 0.91076 0.93428 0.93682 0.93108 0.91735 0.90417 0.89606 0.96089 0.89909 0.92804 0.96324 0.97826 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 9.56 71.98 0.69 -5.37 16 2 C 0.09 4.08 2.24 30.60 0.07 4.15 16 3 C -0.15 -5.18 9.53 71.98 0.69 -4.50 16 4 O -0.36 -18.03 8.19 -148.98 -1.22 -19.25 16 5 C 0.24 11.78 0.29 -11.49 0.00 11.77 16 6 C -0.57 -30.25 6.65 25.60 0.17 -30.08 16 7 H 0.04 2.33 7.76 -2.91 -0.02 2.30 16 8 C 0.05 2.84 4.23 84.65 0.36 3.19 16 9 N -0.86 -47.66 10.40 21.45 0.22 -47.44 16 10 Si 0.93 42.48 29.54 68.60 2.03 44.50 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 C -0.14 -5.63 4.57 30.68 0.14 -5.49 16 15 C -0.11 -3.73 5.90 30.65 0.18 -3.55 16 16 C 0.06 2.06 5.46 86.32 0.47 2.54 16 17 N -0.55 -22.55 4.79 -922.56 -4.42 -26.98 16 18 C 0.03 1.07 9.59 127.69 1.22 2.29 16 19 C 0.09 4.45 4.20 86.32 0.36 4.82 16 20 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.04 2.06 6.42 -2.39 -0.02 2.05 16 23 H 0.04 1.91 5.76 -2.39 -0.01 1.89 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 1.86 6.60 -2.39 -0.02 1.84 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 2.07 6.70 -2.39 -0.02 2.06 16 30 H 0.06 2.38 6.27 -2.39 -0.01 2.37 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.07 3.79 6.37 -2.39 -0.02 3.78 16 Total: -1.00 -58.42 288.26 1.96 -56.46 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.00 Total: 12.93 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 4.35 Total: -20.23 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -4.20 Total: -74.42 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.22 Total: -19.25 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -58.42 1.96 -56.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.934 kcal (2) G-P(sol) polarization free energy of solvation -58.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds