Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47427 * 2 1 4 4 N 1.46901 * 109.47158 * 120.00631 * 2 1 3 5 5 C 1.47843 * 110.99660 * 202.25569 * 4 2 1 6 6 C 1.54907 * 104.79504 * 213.63129 * 5 4 2 7 7 C 1.55145 * 101.65030 * 37.06998 * 6 5 4 8 8 C 1.47442 * 111.00381 * 81.40931 * 4 2 1 9 9 H 1.08994 * 109.88522 * 242.66467 * 8 4 2 10 10 C 1.52994 * 109.88618 * 3.68840 * 8 4 2 11 11 O 1.42909 * 109.47037 * 68.45742 * 10 8 4 12 12 C 1.42901 * 113.99982 * 174.94682 * 11 10 8 13 13 C 1.50701 * 109.46978 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00114 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99651 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00059 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99497 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47176 * 60.00048 * 17 15 13 19 19 H 1.48499 * 109.46626 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47131 * 299.99931 * 17 15 13 21 21 H 1.08996 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47151 * 300.00052 * 1 2 3 23 23 H 1.09002 * 109.47337 * 59.99406 * 1 2 3 24 24 H 1.09001 * 109.46738 * 239.99790 * 2 1 3 25 25 H 1.09001 * 109.47557 * 185.43857 * 3 2 1 26 26 H 1.09003 * 109.47567 * 305.44135 * 3 2 1 27 27 H 1.09004 * 109.46840 * 65.43925 * 3 2 1 28 28 H 1.09003 * 110.37526 * 332.46019 * 5 4 2 29 29 H 1.09006 * 110.37563 * 94.80484 * 5 4 2 30 30 H 1.09001 * 110.99136 * 278.98261 * 6 5 4 31 31 H 1.08995 * 111.02834 * 155.17455 * 6 5 4 32 32 H 1.09000 * 110.70432 * 205.96504 * 7 6 5 33 33 H 1.08997 * 110.85275 * 82.80145 * 7 6 5 34 34 H 1.09005 * 109.47118 * 188.45128 * 10 8 4 35 35 H 1.09000 * 109.48059 * 308.45516 * 10 8 4 36 36 H 1.09001 * 109.47477 * 299.99981 * 12 11 10 37 37 H 1.09005 * 109.47113 * 59.99819 * 12 11 10 38 38 H 0.97000 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4006 -0.2768 1.5246 6 6 4.0645 -1.5423 2.1222 7 6 3.4378 -2.6647 1.2537 8 6 2.0020 -2.1547 1.0096 9 1 1.3190 -2.6131 1.7246 10 6 1.5628 -2.4889 -0.4174 11 8 2.5760 -2.0760 -1.3367 12 6 2.3162 -2.4455 -2.6925 13 6 3.4423 -1.9619 -3.5695 14 1 4.2730 -1.4257 -3.1351 15 6 3.4114 -2.2031 -4.9267 16 7 2.3995 -2.8556 -5.4557 17 14 4.8076 -1.6043 -6.0137 18 1 6.0820 -2.2229 -5.5682 19 1 4.5375 -1.9881 -7.4225 20 1 4.9135 -0.1265 -5.9142 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 3.1257 1.4440 -0.0974 26 1 1.5994 1.9837 -0.8372 27 1 1.7584 1.9273 0.9347 28 1 3.9251 0.0366 0.6218 29 1 3.3914 0.5293 2.2583 30 1 3.7967 -1.6652 3.1716 31 1 5.1470 -1.5115 1.9987 32 1 3.4239 -3.6098 1.7966 33 1 3.9745 -2.7713 0.3110 34 1 1.4070 -3.5640 -0.5072 35 1 0.6328 -1.9670 -0.6431 36 1 2.2388 -3.5303 -2.7651 37 1 1.3806 -1.9918 -3.0198 38 1 2.3779 -3.0256 -6.4105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -34.645535 kcal Electronic energy + Delta-G solvation = -17040.322675 eV Core-core repulsion = 14497.251125 eV Total energy + Delta-G solvation = -2543.071550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73806 -36.22783 -34.02591 -32.77809 -30.43150 -28.73900 -27.25108 -26.49897 -24.40256 -22.41737 -21.53402 -20.41179 -18.61268 -16.53542 -16.45198 -15.60860 -15.49590 -14.84370 -14.21636 -13.73972 -13.38449 -13.23658 -12.90600 -12.43118 -11.96623 -11.82725 -11.65851 -11.55013 -11.23945 -10.93391 -10.88538 -10.82050 -10.70931 -10.45852 -10.39088 -10.25779 -10.20911 -9.97240 -9.16191 -8.82120 -8.25752 -7.64155 -6.14932 -4.17224 3.28693 3.31926 3.35261 4.27369 4.34370 4.75964 5.01265 5.19619 5.21539 5.29090 5.47507 5.51783 5.62205 5.74411 5.87482 5.92864 5.97032 6.01118 6.07155 6.15936 6.17940 6.22133 6.22500 6.30337 6.45424 6.48416 6.63170 6.76178 6.90086 7.05513 7.37117 7.44975 7.58534 7.73950 8.09924 8.49209 8.94942 9.47775 10.96333 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.007580 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.454792 B = 3693.274285 C = 3812.373662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 C -0.145 4.145 4 N -0.517 5.517 5 C 0.044 3.956 6 C -0.128 4.128 7 C -0.136 4.136 8 C 0.076 3.924 9 H 0.085 0.915 10 C 0.028 3.972 11 O -0.384 6.384 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.064 0.936 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 3.506 12.246 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.203 4.203 4 N -0.242 5.242 5 C -0.083 4.083 6 C -0.166 4.166 7 C -0.174 4.174 8 C -0.033 4.033 9 H 0.103 0.897 10 C -0.050 4.050 11 O -0.304 6.304 12 C 0.120 3.880 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.131 0.869 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.113 3.685 12.514 13.093 hybrid contribution 0.831 -0.152 -1.418 1.650 sum -0.283 3.533 11.096 11.649 Atomic orbital electron populations 1.21959 0.95534 1.01371 1.00909 1.22605 0.95237 0.94995 0.95281 1.21943 1.01068 0.96212 1.01076 1.63866 1.21066 1.03919 1.35362 1.22999 0.88854 0.97099 0.99373 1.22655 0.99584 0.95330 0.99072 1.22774 0.95971 0.97659 1.01011 1.22524 0.97117 0.89040 0.94610 0.89742 1.23032 0.93391 0.98371 0.90195 1.87807 1.45123 1.77980 1.19494 1.20201 0.96850 0.94701 0.76279 1.20979 1.06256 1.36606 0.91523 0.91739 1.24936 0.96482 0.95182 0.97763 1.69946 1.30480 1.40573 1.12609 0.86422 0.81948 0.79286 0.78999 1.20040 1.21117 1.20005 0.92503 0.93024 0.92805 0.86887 0.92586 0.92574 0.93140 0.92700 0.91287 0.91597 0.91374 0.91854 0.89298 0.94251 0.92015 0.97714 0.97697 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.82 37.16 0.33 -1.80 16 2 C 0.03 0.44 2.22 -67.72 -0.15 0.29 16 3 C -0.15 -2.21 8.39 37.15 0.31 -1.90 16 4 N -0.52 -8.25 5.02 -215.45 -1.08 -9.33 16 5 C 0.04 0.66 5.43 -2.30 -0.01 0.65 16 6 C -0.13 -1.73 7.08 -24.59 -0.17 -1.91 16 7 C -0.14 -2.08 6.36 -24.91 -0.16 -2.24 16 8 C 0.08 1.21 3.69 -66.73 -0.25 0.96 16 9 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 10 C 0.03 0.52 4.80 37.15 0.18 0.70 16 11 O -0.38 -8.76 6.49 -35.23 -0.23 -8.99 16 12 C 0.19 5.17 5.69 36.01 0.20 5.37 16 13 C -0.52 -14.83 9.43 -34.44 -0.32 -15.16 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 17 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 H 0.06 0.86 5.81 -51.93 -0.30 0.56 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.11 2.33 3.98 -52.43 -0.21 2.12 16 25 H 0.06 0.86 6.26 -51.93 -0.32 0.54 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.90 6.30 -51.93 -0.33 0.58 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.62 6.83 -51.93 -0.35 1.27 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.13 4.07 -51.93 -0.21 0.92 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 290.09 15.07 4.37 4.37 Total: -1.00 -29.25 290.09 -7.71 -36.97 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.35 Total: -0.33 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.14 Total: -13.48 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.35 Total: -35.17 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.23 Total: -8.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.25 -7.71 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.320 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds