Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47427 * 2 1 4 4 N 1.46901 * 109.47158 * 120.00631 * 2 1 3 5 5 C 1.47843 * 110.99660 * 202.25569 * 4 2 1 6 6 C 1.54907 * 104.79504 * 213.63129 * 5 4 2 7 7 C 1.55145 * 101.65030 * 37.06998 * 6 5 4 8 8 C 1.47442 * 111.00381 * 81.40931 * 4 2 1 9 9 H 1.08994 * 109.88522 * 242.66467 * 8 4 2 10 10 C 1.52994 * 109.88618 * 3.68840 * 8 4 2 11 11 O 1.42909 * 109.47037 * 68.45742 * 10 8 4 12 12 C 1.42901 * 113.99982 * 174.94682 * 11 10 8 13 13 C 1.50701 * 109.46978 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00114 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99651 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00059 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99497 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47176 * 60.00048 * 17 15 13 19 19 H 1.48499 * 109.46626 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47131 * 299.99931 * 17 15 13 21 21 H 1.08996 * 109.47261 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47151 * 300.00052 * 1 2 3 23 23 H 1.09002 * 109.47337 * 59.99406 * 1 2 3 24 24 H 1.09001 * 109.46738 * 239.99790 * 2 1 3 25 25 H 1.09001 * 109.47557 * 185.43857 * 3 2 1 26 26 H 1.09003 * 109.47567 * 305.44135 * 3 2 1 27 27 H 1.09004 * 109.46840 * 65.43925 * 3 2 1 28 28 H 1.09003 * 110.37526 * 332.46019 * 5 4 2 29 29 H 1.09006 * 110.37563 * 94.80484 * 5 4 2 30 30 H 1.09001 * 110.99136 * 278.98261 * 6 5 4 31 31 H 1.08995 * 111.02834 * 155.17455 * 6 5 4 32 32 H 1.09000 * 110.70432 * 205.96504 * 7 6 5 33 33 H 1.08997 * 110.85275 * 82.80145 * 7 6 5 34 34 H 1.09005 * 109.47118 * 188.45128 * 10 8 4 35 35 H 1.09000 * 109.48059 * 308.45516 * 10 8 4 36 36 H 1.09001 * 109.47477 * 299.99981 * 12 11 10 37 37 H 1.09005 * 109.47113 * 59.99819 * 12 11 10 38 38 H 0.97000 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4006 -0.2768 1.5246 6 6 4.0645 -1.5423 2.1222 7 6 3.4378 -2.6647 1.2537 8 6 2.0020 -2.1547 1.0096 9 1 1.3190 -2.6131 1.7246 10 6 1.5628 -2.4889 -0.4174 11 8 2.5760 -2.0760 -1.3367 12 6 2.3162 -2.4455 -2.6925 13 6 3.4423 -1.9619 -3.5695 14 1 4.2730 -1.4257 -3.1351 15 6 3.4114 -2.2031 -4.9267 16 7 2.3995 -2.8556 -5.4557 17 14 4.8076 -1.6043 -6.0137 18 1 6.0820 -2.2229 -5.5682 19 1 4.5375 -1.9881 -7.4225 20 1 4.9135 -0.1265 -5.9142 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 3.1257 1.4440 -0.0974 26 1 1.5994 1.9837 -0.8372 27 1 1.7584 1.9273 0.9347 28 1 3.9251 0.0366 0.6218 29 1 3.3914 0.5293 2.2583 30 1 3.7967 -1.6652 3.1716 31 1 5.1470 -1.5115 1.9987 32 1 3.4239 -3.6098 1.7966 33 1 3.9745 -2.7713 0.3110 34 1 1.4070 -3.5640 -0.5072 35 1 0.6328 -1.9670 -0.6431 36 1 2.2388 -3.5303 -2.7651 37 1 1.3806 -1.9918 -3.0198 38 1 2.3779 -3.0256 -6.4105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -53.323214 kcal Electronic energy + Delta-G solvation = -17041.132600 eV Core-core repulsion = 14497.251125 eV Total energy + Delta-G solvation = -2543.881475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09910 -37.96102 -35.26951 -34.93895 -31.88166 -29.96190 -29.28849 -27.77438 -25.87010 -24.52106 -22.80948 -21.64844 -20.00551 -18.58670 -17.99978 -17.31771 -16.84080 -16.51851 -15.96571 -15.12469 -14.93771 -14.78522 -14.20327 -14.07261 -13.48742 -13.20172 -13.05102 -12.96592 -12.88155 -12.77007 -12.64758 -12.19911 -12.03711 -11.95036 -11.78773 -11.67538 -11.58030 -11.42211 -11.23475 -10.81172 -10.15288 -9.02465 -8.34303 -6.46682 1.37006 1.41063 1.49523 2.31130 2.98293 2.99511 3.19965 3.82397 3.86529 4.01121 4.23373 4.27406 4.37650 4.40811 4.47611 4.64686 4.68744 4.73857 4.81629 4.84568 4.96194 4.98303 5.01187 5.06951 5.10844 5.15020 5.20752 5.24825 5.34824 5.49265 5.52275 5.57521 5.93590 6.17659 6.26549 6.48998 6.77920 7.24986 8.77516 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.007580 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.454792 B = 3693.274285 C = 3812.373662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.023 3.977 3 C -0.140 4.140 4 N -0.512 5.512 5 C 0.040 3.960 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.077 3.923 9 H 0.110 0.890 10 C 0.022 3.978 11 O -0.387 6.387 12 C 0.211 3.789 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.979 3.021 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.266 1.266 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.065 0.935 36 H -0.018 1.018 37 H -0.016 1.016 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 4.233 13.493 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.198 4.198 4 N -0.236 5.236 5 C -0.087 4.087 6 C -0.157 4.157 7 C -0.175 4.175 8 C -0.031 4.031 9 H 0.127 0.873 10 C -0.055 4.055 11 O -0.307 6.307 12 C 0.136 3.864 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.801 3.199 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.190 1.190 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.082 0.918 36 H -0.001 1.001 37 H 0.002 0.998 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.495 4.412 13.785 14.483 hybrid contribution 0.582 -0.396 -1.746 1.883 sum 0.087 4.016 12.039 12.691 Atomic orbital electron populations 1.21896 0.94290 1.01386 1.01666 1.22506 0.96336 0.95656 0.93955 1.21890 1.00576 0.95250 1.02063 1.63980 1.21673 1.03646 1.34343 1.23097 0.88155 0.98485 0.98992 1.22655 0.99892 0.93371 0.99762 1.22741 0.95158 0.99621 1.00020 1.22644 0.98126 0.89516 0.92843 0.87271 1.23297 0.92830 0.98358 0.91056 1.87829 1.46612 1.78105 1.18122 1.19750 0.95443 0.92767 0.78393 1.21284 1.06800 1.37424 0.92644 0.92261 1.25916 0.99233 0.94848 0.99059 1.70056 1.32326 1.41161 1.13289 0.85302 0.78442 0.79073 0.77040 1.19105 1.19978 1.19049 0.92844 0.91303 0.92940 0.90908 0.93268 0.92557 0.91268 0.95023 0.89228 0.89206 0.90556 0.89646 0.92933 0.94269 0.91771 1.00061 0.99845 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.82 71.98 0.63 -3.34 16 2 C 0.02 0.77 2.22 44.91 0.10 0.87 16 3 C -0.14 -4.13 8.39 71.98 0.60 -3.53 16 4 N -0.51 -15.53 5.02 -835.56 -4.20 -19.73 16 5 C 0.04 1.13 5.43 86.77 0.47 1.60 16 6 C -0.12 -2.92 7.08 31.98 0.23 -2.70 16 7 C -0.14 -4.02 6.36 31.77 0.20 -3.82 16 8 C 0.08 2.37 3.69 45.25 0.17 2.54 16 9 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 10 C 0.02 0.82 4.80 71.98 0.35 1.17 16 11 O -0.39 -18.37 6.49 -148.98 -0.97 -19.34 16 12 C 0.21 11.81 5.69 71.24 0.41 12.22 16 13 C -0.54 -32.20 9.43 25.60 0.24 -31.96 16 14 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 15 C 0.01 0.47 5.46 84.66 0.46 0.93 16 16 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 17 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H 0.05 1.59 5.81 -2.39 -0.01 1.57 16 22 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 3.09 3.98 -10.32 -0.04 3.05 16 25 H 0.05 1.50 6.26 -2.39 -0.01 1.48 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.03 1.03 6.30 -2.39 -0.02 1.02 16 29 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.93 6.83 -2.39 -0.02 1.92 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.06 2.40 4.07 -2.39 -0.01 2.39 16 36 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 37 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -63.50 290.09 1.99 -61.51 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.98 Total: 12.78 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.86 Total: -26.02 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -3.91 Total: -75.36 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.97 Total: -19.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.50 1.99 -61.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.187 kcal (2) G-P(sol) polarization free energy of solvation -63.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds