Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 N 1.46903 * 109.47066 * 119.99762 * 2 1 3 5 5 C 1.47842 * 110.99960 * 39.63995 * 4 2 1 6 6 C 1.54906 * 104.79449 * 146.36330 * 5 4 2 7 7 C 1.55397 * 101.74031 * 323.01842 * 6 5 4 8 8 C 1.47440 * 110.99718 * 160.48380 * 4 2 1 9 9 H 1.09002 * 109.88643 * 117.17462 * 8 4 2 10 10 C 1.53000 * 109.88987 * 356.14745 * 8 4 2 11 11 O 1.42896 * 109.47086 * 291.53951 * 10 8 4 12 12 C 1.42901 * 114.00082 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47365 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99915 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99880 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00353 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99688 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46914 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47141 * 60.00535 * 17 15 13 20 20 H 1.48498 * 109.47106 * 300.00022 * 17 15 13 21 21 H 1.09000 * 109.47400 * 184.29696 * 1 2 3 22 22 H 1.09001 * 109.47157 * 304.29738 * 1 2 3 23 23 H 1.08997 * 109.47209 * 64.29425 * 1 2 3 24 24 H 1.08995 * 109.47122 * 239.99950 * 2 1 3 25 25 H 1.08995 * 109.47424 * 174.19368 * 3 2 1 26 26 H 1.09002 * 109.47079 * 294.19408 * 3 2 1 27 27 H 1.09001 * 109.47506 * 54.18979 * 3 2 1 28 28 H 1.09001 * 110.37191 * 265.18873 * 5 4 2 29 29 H 1.08998 * 110.37249 * 27.52980 * 5 4 2 30 30 H 1.08995 * 110.98918 * 81.02001 * 6 5 4 31 31 H 1.09001 * 110.98850 * 204.80280 * 6 5 4 32 32 H 1.08999 * 110.67890 * 277.17566 * 7 6 5 33 33 H 1.09000 * 110.84350 * 153.86650 * 7 6 5 34 34 H 1.09006 * 109.47223 * 171.53960 * 10 8 4 35 35 H 1.08999 * 109.47012 * 51.53843 * 10 8 4 36 36 H 1.08992 * 109.47547 * 59.99437 * 12 11 10 37 37 H 1.09004 * 109.46631 * 299.99519 * 12 11 10 38 38 H 0.96999 * 119.99589 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.1942 -1.8819 1.4987 6 6 2.1848 -2.9097 2.1003 7 6 3.4628 -2.6489 1.2556 8 6 3.4190 -1.1235 1.0264 9 1 4.0547 -0.6206 1.7552 10 6 3.8929 -0.7963 -0.3910 11 8 3.2023 -1.6257 -1.3276 12 6 3.5738 -1.3994 -2.6888 13 6 2.7886 -2.3232 -3.5840 14 1 2.0775 -3.0142 -3.1562 15 6 2.9783 -2.2860 -4.9491 16 7 3.8447 -1.4449 -5.4701 17 14 2.0056 -3.4316 -6.0587 18 1 2.3917 -3.1963 -7.4733 19 1 0.5538 -3.1685 -5.8910 20 1 2.2987 -4.8409 -5.6939 21 1 -0.3634 -1.0248 0.0770 22 1 -0.3633 0.5791 0.8490 23 1 -0.3633 0.4457 -0.9259 24 1 1.8933 -0.5138 -0.8899 25 1 3.1250 1.4443 0.1040 26 1 1.7640 1.9255 -0.9374 27 1 1.5942 1.9856 0.8334 28 1 0.4188 -1.6332 2.2233 29 1 0.7487 -2.2743 0.5846 30 1 2.3678 -2.7045 3.1549 31 1 1.8236 -3.9285 1.9597 32 1 3.4126 -3.1828 0.3066 33 1 4.3582 -2.9298 1.8101 34 1 4.9651 -0.9778 -0.4666 35 1 3.6853 0.2509 -0.6109 36 1 4.6392 -1.5936 -2.8118 37 1 3.3597 -0.3647 -2.9565 38 1 4.3501 -0.8503 -4.8938 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -56.518942 kcal Electronic energy + Delta-G solvation = -17097.075857 eV Core-core repulsion = 14553.055805 eV Total energy + Delta-G solvation = -2544.020052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20047 -38.13437 -35.33018 -35.23923 -31.92523 -30.02118 -28.86321 -27.80766 -25.89927 -24.76959 -22.87171 -21.73172 -20.10936 -19.17152 -18.09932 -17.36884 -16.90348 -16.30161 -15.71782 -15.27739 -15.05286 -14.87909 -14.33478 -14.12369 -13.82912 -13.31416 -13.14426 -13.03862 -12.92771 -12.69077 -12.56839 -12.12534 -12.02212 -11.94773 -11.85786 -11.70467 -11.55492 -11.47236 -10.87082 -10.80428 -10.30247 -9.10030 -8.85396 -6.57093 1.49408 1.57809 1.78854 2.45347 2.87471 3.00730 3.08747 3.75276 3.79067 3.93509 4.16406 4.20765 4.29497 4.30889 4.34849 4.49604 4.56921 4.63765 4.67167 4.75855 4.84702 4.91017 4.91960 4.94933 5.01192 5.06096 5.13127 5.18062 5.27443 5.43982 5.47358 5.64037 5.88998 6.10429 6.19026 6.30012 6.58966 7.23427 8.55052 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.007683 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.732060 B = 3643.584070 C = 3765.471963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.024 3.976 3 C -0.136 4.136 4 N -0.510 5.510 5 C 0.040 3.960 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.077 3.923 9 H 0.112 0.888 10 C 0.017 3.983 11 O -0.381 6.381 12 C 0.199 3.801 13 C -0.618 4.618 14 H 0.051 0.949 15 C -0.028 4.028 16 N -0.927 5.927 17 Si 1.124 2.876 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.268 1.268 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.067 0.933 36 H -0.023 1.023 37 H -0.020 1.020 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 0.896 14.360 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.193 4.193 4 N -0.235 5.235 5 C -0.087 4.087 6 C -0.157 4.157 7 C -0.175 4.175 8 C -0.031 4.031 9 H 0.130 0.870 10 C -0.060 4.060 11 O -0.300 6.300 12 C 0.124 3.876 13 C -0.655 4.655 14 H 0.069 0.931 15 C -0.226 4.226 16 N -0.564 5.564 17 Si 0.943 3.057 18 H -0.201 1.201 19 H -0.192 1.192 20 H -0.193 1.193 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.085 0.915 36 H -0.005 1.005 37 H -0.002 1.002 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.376 0.710 13.263 13.985 hybrid contribution 0.900 0.382 0.537 1.115 sum -3.476 1.092 13.801 14.274 Atomic orbital electron populations 1.21924 0.94227 1.01960 1.01854 1.22464 0.96066 0.96046 0.93760 1.21914 1.00767 0.95120 1.01505 1.63979 1.01289 1.23460 1.34792 1.23104 0.96827 0.89834 0.98975 1.22703 0.94071 0.98928 0.99959 1.22787 0.99742 0.94920 1.00077 1.22645 0.91448 0.96202 0.92801 0.87029 1.23409 0.95591 0.96029 0.90975 1.87858 1.63848 1.62014 1.16302 1.19876 0.93436 0.94587 0.79714 1.22181 1.26166 1.23216 0.93971 0.93067 1.27536 0.97395 0.99557 0.98063 1.70929 1.24555 1.21942 1.38953 0.82863 0.74915 0.73905 0.73974 1.20090 1.19234 1.19282 0.92677 0.91132 0.92979 0.91406 0.92550 0.93264 0.91092 0.89042 0.95186 0.89047 0.90503 0.93144 0.89410 0.94162 0.91527 1.00515 1.00195 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.74 71.98 0.63 -3.60 16 2 C 0.02 0.82 2.20 44.92 0.10 0.92 16 3 C -0.14 -4.02 8.67 71.98 0.62 -3.39 16 4 N -0.51 -15.46 5.02 -835.55 -4.20 -19.66 16 5 C 0.04 1.12 5.29 86.77 0.46 1.58 16 6 C -0.12 -2.89 7.08 32.07 0.23 -2.67 16 7 C -0.14 -3.99 6.38 31.86 0.20 -3.78 16 8 C 0.08 2.36 3.62 45.26 0.16 2.52 16 9 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 10 C 0.02 0.64 4.77 71.98 0.34 0.98 16 11 O -0.38 -18.14 6.51 -148.98 -0.97 -19.11 16 12 C 0.20 11.03 4.94 71.24 0.35 11.38 16 13 C -0.62 -36.95 9.43 25.60 0.24 -36.71 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C -0.03 -1.63 5.46 84.65 0.46 -1.16 16 16 N -0.93 -57.42 13.65 21.45 0.29 -57.13 16 17 Si 1.12 50.48 29.90 68.60 2.05 52.53 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H 0.05 1.65 5.86 -2.39 -0.01 1.63 16 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 2.91 4.05 -7.52 -0.03 2.88 16 25 H 0.06 1.66 5.77 -2.39 -0.01 1.64 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 0.99 6.42 -2.39 -0.02 0.97 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.85 6.82 -2.39 -0.02 1.84 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 2.46 4.01 -2.39 -0.01 2.45 16 36 H -0.02 -1.31 8.01 -2.39 -0.02 -1.33 16 37 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 38 H 0.26 15.97 7.22 -92.71 -0.67 15.30 16 Total: -1.00 -65.70 288.38 2.08 -63.62 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.10 Total: 13.69 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.80 Total: -33.93 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -3.90 Total: -76.79 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.97 Total: -19.11 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -65.70 2.08 -63.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.101 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds