Wall clock time and date at job start Mon Mar 30 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99624 * 2 1 4 4 C 1.50698 * 109.50699 * 64.19434 * 3 2 1 5 5 H 1.08003 * 120.00170 * 234.50252 * 4 3 2 6 6 C 1.37874 * 119.99603 * 54.49327 * 4 3 2 7 7 N 1.31511 * 120.00376 * 4.80905 * 6 4 3 8 8 Si 1.86804 * 119.99648 * 184.80478 * 6 4 3 9 9 H 1.48499 * 109.47191 * 90.00642 * 8 6 4 10 10 H 1.48502 * 109.47248 * 210.00066 * 8 6 4 11 11 H 1.48495 * 109.47353 * 330.00487 * 8 6 4 12 12 C 1.53124 * 109.53798 * 304.09164 * 3 2 1 13 13 C 1.53112 * 109.16097 * 297.69743 * 12 3 2 14 14 C 1.53034 * 109.27998 * 302.34635 * 13 12 3 15 15 N 1.46846 * 109.52557 * 59.17778 * 14 13 12 16 16 C 1.46902 * 110.99760 * 174.16251 * 15 14 13 17 17 C 1.52997 * 109.47284 * 298.95325 * 16 15 14 18 18 C 1.53001 * 109.47200 * 58.95759 * 16 15 14 19 19 C 1.46847 * 111.19792 * 298.25959 * 15 14 13 20 20 H 1.08996 * 109.47095 * 295.53908 * 1 2 3 21 21 H 1.08997 * 109.47381 * 55.53845 * 1 2 3 22 22 H 1.09000 * 109.46993 * 175.53709 * 1 2 3 23 23 H 0.97000 * 119.99863 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.52064 * 57.60351 * 12 3 2 25 25 H 1.08998 * 109.52430 * 177.72374 * 12 3 2 26 26 H 1.08998 * 109.50536 * 182.39790 * 13 12 3 27 27 H 1.09002 * 109.50434 * 62.28318 * 13 12 3 28 28 H 1.09009 * 109.45863 * 299.15967 * 14 13 12 29 29 H 1.09002 * 109.46341 * 179.20007 * 14 13 12 30 30 H 1.09001 * 109.46905 * 178.95547 * 16 15 14 31 31 H 1.09001 * 109.46968 * 60.00261 * 17 16 15 32 32 H 1.09001 * 109.46834 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47095 * 300.00192 * 17 16 15 34 34 H 1.09001 * 109.47019 * 299.99718 * 18 16 15 35 35 H 1.08993 * 109.47302 * 59.99483 * 18 16 15 36 36 H 1.09002 * 109.46707 * 179.97438 * 18 16 15 37 37 H 1.09000 * 109.46272 * 181.75504 * 19 15 14 38 38 H 1.09003 * 109.46338 * 301.72943 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6499 2.0167 1.2788 5 1 1.1748 2.9859 1.2423 6 6 1.9266 1.4299 2.4954 7 7 2.5891 0.2948 2.5425 8 14 1.3606 2.2473 4.0768 9 1 0.0040 1.7569 4.4295 10 1 2.3070 1.9153 5.1720 11 1 1.3207 3.7194 3.8864 12 6 1.4795 2.1023 -1.1951 13 6 1.9014 1.4049 -2.4913 14 6 3.4265 1.2837 -2.5265 15 7 3.8845 0.5129 -1.3635 16 6 5.3294 0.2580 -1.4369 17 6 5.6401 -0.5586 -2.6928 18 6 6.0800 1.5899 -1.4959 19 6 3.5322 1.1872 -0.1074 20 1 -0.3633 0.4430 0.9272 21 1 -0.3634 0.5815 -0.8473 22 1 -0.3633 -1.0246 -0.0800 23 1 2.7841 -0.1178 3.3985 24 1 0.3917 2.1520 -1.1455 25 1 1.8915 3.1111 -1.1722 26 1 1.5629 1.9903 -3.3462 27 1 1.4563 0.4107 -2.5312 28 1 3.8706 2.2788 -2.5005 29 1 3.7293 0.7748 -3.4416 30 1 5.6454 -0.2983 -0.5544 31 1 5.3241 -0.0023 -3.5753 32 1 6.7121 -0.7481 -2.7469 33 1 5.1054 -1.5075 -2.6507 34 1 5.7639 2.1463 -2.3783 35 1 5.8586 2.1717 -0.6012 36 1 7.1521 1.4007 -1.5498 37 1 3.9117 0.6081 0.7344 38 1 3.9758 2.1827 -0.0928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260625377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:16 Heat of formation + Delta-G solvation = -42.328875 kcal Electronic energy + Delta-G solvation = -17595.483417 eV Core-core repulsion = 15052.078693 eV Total energy + Delta-G solvation = -2543.404724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.89556 -36.31241 -33.05334 -32.44522 -29.84804 -28.94745 -26.82369 -25.32357 -24.98462 -22.94664 -21.69370 -19.40927 -18.14540 -16.57725 -15.50427 -14.68518 -14.60302 -14.06380 -13.91242 -13.74322 -13.34375 -12.92319 -12.66337 -12.38445 -11.89203 -11.80165 -11.44278 -11.33453 -11.02060 -10.93413 -10.72541 -10.69419 -10.41297 -10.17680 -10.09161 -10.02054 -9.83189 -9.33379 -8.59754 -8.45634 -7.66855 -7.26280 -5.94648 -4.13136 3.28306 3.35978 3.38289 4.39943 4.75095 5.26794 5.36598 5.54241 5.54954 5.72986 5.77854 5.83536 5.93692 6.03724 6.05832 6.16929 6.26703 6.36574 6.46132 6.51091 6.58208 6.59653 6.64532 6.68854 6.83199 6.86852 6.96643 7.05952 7.11837 7.30269 7.77086 7.94089 8.05613 8.14481 8.35113 8.83902 9.22354 9.61312 11.05148 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.010367 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.544337 B = 2700.153013 C = 3114.557750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.354 6.354 3 C 0.250 3.750 4 C -0.560 4.560 5 H 0.055 0.945 6 C 0.085 3.915 7 N -0.852 5.852 8 Si 0.882 3.118 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.144 4.144 13 C -0.112 4.112 14 C 0.057 3.943 15 N -0.523 5.523 16 C 0.075 3.925 17 C -0.141 4.141 18 C -0.185 4.185 19 C 0.082 3.918 20 H 0.033 0.967 21 H 0.014 0.986 22 H 0.048 0.952 23 H 0.260 0.740 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 0.792 -7.761 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.272 6.272 3 C 0.211 3.789 4 C -0.598 4.598 5 H 0.073 0.927 6 C -0.121 4.121 7 N -0.487 5.487 8 Si 0.709 3.291 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.182 4.182 13 C -0.150 4.150 14 C -0.071 4.071 15 N -0.247 5.247 16 C -0.034 4.034 17 C -0.198 4.198 18 C -0.244 4.244 19 C -0.045 4.045 20 H 0.052 0.948 21 H 0.033 0.967 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.879 0.018 -7.644 8.168 hybrid contribution -0.140 1.590 0.994 1.880 sum 2.739 1.608 -6.650 7.370 Atomic orbital electron populations 1.22228 0.85662 0.98399 0.98593 1.87972 1.15611 1.29237 1.94368 1.18885 0.89027 0.80871 0.90108 1.21498 1.42293 1.04997 0.91010 0.92720 1.24967 0.93985 0.94521 0.98663 1.69993 1.36948 1.16711 1.25041 0.86783 0.78772 0.79901 0.83628 1.20590 1.21163 1.19972 1.22245 1.00408 0.99203 0.96324 1.21512 0.95255 1.01024 0.97168 1.22043 0.95709 0.95168 0.94214 1.62260 1.11455 1.47998 1.02958 1.21645 0.88519 0.94655 0.98545 1.21850 1.00040 1.00544 0.97404 1.22482 1.00158 0.99827 1.01935 1.22194 0.96707 0.95404 0.90167 0.94798 0.96715 0.93304 0.93027 0.92778 0.93184 0.93661 0.91315 0.96090 0.92078 0.90297 0.93088 0.93235 0.92042 0.92955 0.92298 0.93083 0.87716 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.10 10.32 101.05 1.04 2.15 16 2 O -0.35 -9.18 8.88 -35.23 -0.31 -9.49 16 3 C 0.25 6.19 0.32 -91.69 -0.03 6.16 16 4 C -0.56 -15.08 7.02 -34.44 -0.24 -15.32 16 5 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 6 C 0.08 2.30 5.26 -17.82 -0.09 2.21 16 7 N -0.85 -23.97 11.00 55.43 0.61 -23.36 16 8 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 C -0.14 -3.09 4.32 -26.61 -0.11 -3.21 16 13 C -0.11 -2.10 5.94 -26.66 -0.16 -2.26 16 14 C 0.06 1.04 4.63 -3.84 -0.02 1.02 16 15 N -0.52 -10.72 4.52 -226.68 -1.03 -11.75 16 16 C 0.08 1.31 2.96 -67.71 -0.20 1.11 16 17 C -0.14 -2.04 9.00 37.16 0.33 -1.71 16 18 C -0.19 -2.91 8.50 37.16 0.32 -2.59 16 19 C 0.08 1.95 3.82 -3.83 -0.01 1.94 16 20 H 0.03 0.81 7.42 -51.93 -0.39 0.43 16 21 H 0.01 0.30 6.06 -51.93 -0.31 -0.01 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.05 1.15 6.27 -51.93 -0.33 0.82 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.37 7.80 -51.93 -0.41 0.97 16 28 H 0.02 0.38 6.62 -51.92 -0.34 0.04 16 29 H 0.06 1.00 6.04 -51.93 -0.31 0.68 16 30 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 31 H 0.05 0.70 6.30 -51.93 -0.33 0.37 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.79 6.52 -51.93 -0.34 0.45 16 35 H 0.06 1.01 6.66 -51.93 -0.35 0.67 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 2.82 6.30 -51.93 -0.33 2.49 16 38 H 0.02 0.48 6.74 -51.93 -0.35 0.13 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -28.33 283.05 -6.94 -35.27 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.27 Total: -0.34 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 0.82 Total: -10.51 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.42 Total: -35.10 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.31 Total: -9.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.33 -6.94 -35.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.062 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds