Wall clock time and date at job start Mon Mar 30 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99624 * 2 1 4 4 C 1.50698 * 109.50699 * 64.19434 * 3 2 1 5 5 H 1.08003 * 120.00170 * 234.50252 * 4 3 2 6 6 C 1.37874 * 119.99603 * 54.49327 * 4 3 2 7 7 N 1.31511 * 120.00376 * 4.80905 * 6 4 3 8 8 Si 1.86804 * 119.99648 * 184.80478 * 6 4 3 9 9 H 1.48499 * 109.47191 * 90.00642 * 8 6 4 10 10 H 1.48502 * 109.47248 * 210.00066 * 8 6 4 11 11 H 1.48495 * 109.47353 * 330.00487 * 8 6 4 12 12 C 1.53124 * 109.53798 * 304.09164 * 3 2 1 13 13 C 1.53112 * 109.16097 * 297.69743 * 12 3 2 14 14 C 1.53034 * 109.27998 * 302.34635 * 13 12 3 15 15 N 1.46846 * 109.52557 * 59.17778 * 14 13 12 16 16 C 1.46902 * 110.99760 * 174.16251 * 15 14 13 17 17 C 1.52997 * 109.47284 * 298.95325 * 16 15 14 18 18 C 1.53001 * 109.47200 * 58.95759 * 16 15 14 19 19 C 1.46847 * 111.19792 * 298.25959 * 15 14 13 20 20 H 1.08996 * 109.47095 * 295.53908 * 1 2 3 21 21 H 1.08997 * 109.47381 * 55.53845 * 1 2 3 22 22 H 1.09000 * 109.46993 * 175.53709 * 1 2 3 23 23 H 0.97000 * 119.99863 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.52064 * 57.60351 * 12 3 2 25 25 H 1.08998 * 109.52430 * 177.72374 * 12 3 2 26 26 H 1.08998 * 109.50536 * 182.39790 * 13 12 3 27 27 H 1.09002 * 109.50434 * 62.28318 * 13 12 3 28 28 H 1.09009 * 109.45863 * 299.15967 * 14 13 12 29 29 H 1.09002 * 109.46341 * 179.20007 * 14 13 12 30 30 H 1.09001 * 109.46905 * 178.95547 * 16 15 14 31 31 H 1.09001 * 109.46968 * 60.00261 * 17 16 15 32 32 H 1.09001 * 109.46834 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47095 * 300.00192 * 17 16 15 34 34 H 1.09001 * 109.47019 * 299.99718 * 18 16 15 35 35 H 1.08993 * 109.47302 * 59.99483 * 18 16 15 36 36 H 1.09002 * 109.46707 * 179.97438 * 18 16 15 37 37 H 1.09000 * 109.46272 * 181.75504 * 19 15 14 38 38 H 1.09003 * 109.46338 * 301.72943 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6499 2.0167 1.2788 5 1 1.1748 2.9859 1.2423 6 6 1.9266 1.4299 2.4954 7 7 2.5891 0.2948 2.5425 8 14 1.3606 2.2473 4.0768 9 1 0.0040 1.7569 4.4295 10 1 2.3070 1.9153 5.1720 11 1 1.3207 3.7194 3.8864 12 6 1.4795 2.1023 -1.1951 13 6 1.9014 1.4049 -2.4913 14 6 3.4265 1.2837 -2.5265 15 7 3.8845 0.5129 -1.3635 16 6 5.3294 0.2580 -1.4369 17 6 5.6401 -0.5586 -2.6928 18 6 6.0800 1.5899 -1.4959 19 6 3.5322 1.1872 -0.1074 20 1 -0.3633 0.4430 0.9272 21 1 -0.3634 0.5815 -0.8473 22 1 -0.3633 -1.0246 -0.0800 23 1 2.7841 -0.1178 3.3985 24 1 0.3917 2.1520 -1.1455 25 1 1.8915 3.1111 -1.1722 26 1 1.5629 1.9903 -3.3462 27 1 1.4563 0.4107 -2.5312 28 1 3.8706 2.2788 -2.5005 29 1 3.7293 0.7748 -3.4416 30 1 5.6454 -0.2983 -0.5544 31 1 5.3241 -0.0023 -3.5753 32 1 6.7121 -0.7481 -2.7469 33 1 5.1054 -1.5075 -2.6507 34 1 5.7639 2.1463 -2.3783 35 1 5.8586 2.1717 -0.6012 36 1 7.1521 1.4007 -1.5498 37 1 3.9117 0.6081 0.7344 38 1 3.9758 2.1827 -0.0928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:16 Heat of formation + Delta-G solvation = -60.656151 kcal Electronic energy + Delta-G solvation = -17596.278148 eV Core-core repulsion = 15052.078693 eV Total energy + Delta-G solvation = -2544.199455 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55084 -38.01754 -34.64792 -34.47672 -31.45731 -30.67158 -28.07907 -27.17259 -26.86297 -24.59497 -23.34720 -21.01891 -19.80010 -18.54964 -17.14024 -16.57371 -16.25327 -15.75490 -15.55043 -15.44302 -15.01351 -14.47618 -14.15202 -14.03816 -13.55105 -13.34599 -13.01483 -12.87685 -12.72715 -12.59012 -12.51197 -12.12402 -12.08462 -12.03505 -11.73474 -11.57586 -11.47789 -11.06010 -10.62006 -10.34153 -9.60665 -8.83988 -8.00557 -6.25855 1.37857 1.40246 1.48421 2.41318 3.11092 3.35381 3.72767 4.04480 4.16002 4.24550 4.34843 4.42748 4.52807 4.69390 4.75382 4.77406 4.79978 4.87853 4.91343 4.94194 4.99623 5.10060 5.13677 5.16335 5.19699 5.26895 5.32261 5.42087 5.49155 5.59765 5.68788 6.01813 6.21630 6.49375 6.60356 6.81504 7.27098 7.55685 8.97293 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.010367 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.544337 B = 2700.153013 C = 3114.557750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.377 6.377 3 C 0.239 3.761 4 C -0.574 4.574 5 H 0.046 0.954 6 C 0.043 3.957 7 N -0.878 5.878 8 Si 0.938 3.062 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 C -0.139 4.139 13 C -0.106 4.106 14 C 0.057 3.943 15 N -0.537 5.537 16 C 0.069 3.931 17 C -0.131 4.131 18 C -0.176 4.176 19 C 0.098 3.902 20 H 0.012 0.988 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.258 0.742 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 1.176 -9.461 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.296 6.296 3 C 0.200 3.800 4 C -0.613 4.613 5 H 0.064 0.936 6 C -0.161 4.161 7 N -0.514 5.514 8 Si 0.764 3.236 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.195 1.195 12 C -0.177 4.177 13 C -0.144 4.144 14 C -0.071 4.071 15 N -0.262 5.262 16 C -0.040 4.040 17 C -0.188 4.188 18 C -0.235 4.235 19 C -0.030 4.030 20 H 0.030 0.970 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 3.111 0.408 -9.356 9.868 hybrid contribution -0.212 1.460 1.507 2.109 sum 2.899 1.868 -7.849 8.573 Atomic orbital electron populations 1.22301 0.84344 0.99840 0.98272 1.87921 1.17212 1.29981 1.94500 1.18994 0.89632 0.80762 0.90600 1.21812 1.42009 1.04831 0.92612 0.93561 1.25602 0.94068 0.95049 1.01393 1.70137 1.37929 1.17944 1.25430 0.85893 0.78273 0.79133 0.80305 1.20356 1.20828 1.19516 1.22138 1.00182 0.98805 0.96606 1.21494 0.95657 1.00536 0.96699 1.22128 0.95315 0.95497 0.94111 1.62176 1.13702 1.47996 1.02288 1.21750 0.87010 0.95851 0.99383 1.21770 1.01625 0.99513 0.95904 1.22375 1.01519 0.98412 1.01160 1.21775 0.96118 0.94235 0.90872 0.96977 0.94714 0.91365 0.93271 0.92858 0.93374 0.90258 0.92413 0.95630 0.89331 0.92559 0.91765 0.90754 0.92961 0.91865 0.94760 0.90604 0.91592 0.97306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.23 10.32 113.37 1.17 3.40 16 2 O -0.38 -19.73 8.88 -148.98 -1.32 -21.06 16 3 C 0.24 11.93 0.32 -11.49 0.00 11.93 16 4 C -0.57 -31.49 7.02 25.60 0.18 -31.31 16 5 H 0.05 2.54 7.75 -2.91 -0.02 2.52 16 6 C 0.04 2.35 5.26 84.65 0.45 2.79 16 7 N -0.88 -50.80 11.00 21.45 0.24 -50.56 16 8 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 C -0.14 -5.86 4.32 30.67 0.13 -5.73 16 13 C -0.11 -3.73 5.94 30.64 0.18 -3.55 16 14 C 0.06 1.94 4.63 86.32 0.40 2.34 16 15 N -0.54 -21.69 4.52 -871.10 -3.94 -25.63 16 16 C 0.07 2.32 2.96 44.91 0.13 2.45 16 17 C -0.13 -3.43 9.00 71.98 0.65 -2.78 16 18 C -0.18 -5.24 8.50 71.98 0.61 -4.63 16 19 C 0.10 4.75 3.82 86.33 0.33 5.08 16 20 H 0.01 0.57 7.42 -2.39 -0.02 0.55 16 21 H 0.03 1.40 6.06 -2.39 -0.01 1.38 16 22 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 23 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 24 H 0.05 2.20 6.27 -2.39 -0.01 2.19 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 2.17 7.80 -2.39 -0.02 2.15 16 28 H 0.03 0.86 6.62 -2.38 -0.02 0.84 16 29 H 0.09 2.55 6.04 -2.39 -0.01 2.53 16 30 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 31 H 0.06 1.51 6.30 -2.39 -0.02 1.50 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.74 6.52 -2.39 -0.02 1.72 16 35 H 0.03 1.17 6.66 -2.39 -0.02 1.15 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 3.71 6.30 -2.39 -0.02 3.69 16 38 H 0.01 0.44 6.74 -2.39 -0.02 0.42 16 Total: -1.00 -61.55 283.05 2.24 -59.31 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.02 Total: 12.33 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.23 Total: -20.00 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -3.71 Total: -76.20 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.32 Total: -21.06 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -61.55 2.24 -59.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.347 kcal (2) G-P(sol) polarization free energy of solvation -61.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds