Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00164 * 2 1 4 4 C 1.52998 * 109.47225 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47156 * 59.99714 * 3 2 1 6 6 H 1.08000 * 119.99302 * 239.99994 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.72527 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47154 * 89.99418 * 9 7 5 11 11 H 1.48493 * 109.47010 * 209.99942 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99638 * 9 7 5 13 13 C 1.52998 * 109.46974 * 299.99508 * 3 2 1 14 14 H 1.08998 * 109.50101 * 60.08217 * 13 3 2 15 15 C 1.53117 * 109.50235 * 299.99930 * 13 3 2 16 16 C 1.53121 * 109.15756 * 182.40462 * 15 13 3 17 17 C 1.53039 * 109.27687 * 57.66169 * 16 15 13 18 18 N 1.46846 * 109.52006 * 300.81138 * 17 16 15 19 19 C 1.46898 * 111.00233 * 185.84385 * 18 17 16 20 20 C 1.46849 * 111.19492 * 61.74860 * 18 17 16 21 21 H 1.08991 * 109.47227 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47097 * 300.00881 * 1 2 3 23 23 H 1.09002 * 109.46565 * 60.00285 * 1 2 3 24 24 H 1.09005 * 109.47120 * 300.00252 * 4 3 2 25 25 H 1.09002 * 109.46792 * 60.00027 * 4 3 2 26 26 H 1.09002 * 109.47539 * 179.97438 * 4 3 2 27 27 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.52621 * 302.31209 * 15 13 3 29 29 H 1.09005 * 109.52340 * 62.43717 * 15 13 3 30 30 H 1.09004 * 109.50133 * 177.59169 * 16 15 13 31 31 H 1.08994 * 109.50445 * 297.71069 * 16 15 13 32 32 H 1.08994 * 109.46622 * 60.83145 * 17 16 15 33 33 H 1.09004 * 109.45717 * 180.81464 * 17 16 15 34 34 H 1.08999 * 109.46954 * 56.04614 * 19 18 17 35 35 H 1.08999 * 109.47556 * 176.04983 * 19 18 17 36 36 H 1.09005 * 109.47028 * 296.04953 * 19 18 17 37 37 H 1.09000 * 109.46433 * 178.24132 * 20 18 17 38 38 H 1.08995 * 109.46525 * 58.27450 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5656 2.0533 1.2305 6 1 1.0160 2.9777 1.1312 7 6 1.8554 1.5547 2.4827 8 7 2.5195 0.4260 2.6035 9 14 1.3035 2.4814 4.0079 10 1 -0.0487 2.0158 4.4078 11 1 2.2613 2.2288 5.1142 12 1 1.2592 3.9363 3.7140 13 6 1.5589 2.0646 -1.2493 14 1 0.4725 2.1522 -1.2491 15 6 2.0105 1.3053 -2.4999 16 6 1.6076 2.1016 -3.7441 17 6 2.2324 3.4970 -3.6751 18 7 1.7690 4.1826 -2.4620 19 6 2.2379 5.5744 -2.4322 20 6 2.1850 3.4611 -1.2525 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 3.8568 0.6438 0.8909 25 1 3.8574 0.6435 -0.8891 26 1 3.9789 2.1803 0.0002 27 1 2.7231 0.0748 3.4845 28 1 3.0934 1.1828 -2.4806 29 1 1.5335 0.3254 -2.5232 30 1 1.9641 1.5872 -4.6366 31 1 0.5220 2.1904 -3.7837 32 1 3.3184 3.4079 -3.6495 33 1 1.9356 4.0715 -4.5526 34 1 1.9122 6.0870 -3.3373 35 1 1.8230 6.0790 -1.5596 36 1 3.3264 5.5900 -2.3775 37 1 1.8541 4.0094 -0.3706 38 1 3.2713 3.3722 -1.2383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260758534.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -46.883383 kcal Electronic energy + Delta-G solvation = -17490.875524 eV Core-core repulsion = 14947.273302 eV Total energy + Delta-G solvation = -2543.602223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01177 -36.56257 -32.93979 -32.58492 -31.10144 -27.95552 -26.35295 -25.48284 -24.66634 -22.96159 -22.20081 -20.04872 -18.12754 -16.44982 -15.52580 -14.88030 -14.56168 -14.30042 -14.15219 -13.56124 -13.33854 -13.22412 -12.91104 -12.45899 -11.93855 -11.88675 -11.41908 -11.29369 -11.02800 -10.91957 -10.75461 -10.61126 -10.32818 -10.15129 -10.11340 -9.94071 -9.67472 -9.32635 -8.56043 -8.45296 -7.86926 -7.71433 -5.92333 -4.10829 3.28890 3.36571 3.39201 4.37701 4.41656 5.22137 5.28937 5.38332 5.43905 5.64116 5.67860 5.75893 5.83034 6.01267 6.07719 6.08957 6.18947 6.32707 6.47177 6.52302 6.54383 6.61196 6.70901 6.77649 6.93960 7.04792 7.06904 7.09692 7.24298 7.50246 7.55061 7.62412 7.81375 8.12048 8.33864 8.85425 9.15250 9.62049 11.06941 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.010233 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.343751 B = 2735.659850 C = 3247.166190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.375 6.375 3 C 0.243 3.757 4 C -0.126 4.126 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.081 3.919 8 N -0.857 5.857 9 Si 0.882 3.118 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.098 4.098 14 H 0.065 0.935 15 C -0.115 4.115 16 C -0.116 4.116 17 C 0.059 3.941 18 N -0.548 5.548 19 C 0.028 3.972 20 C 0.072 3.928 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.014 0.986 24 H 0.087 0.913 25 H 0.017 0.983 26 H 0.039 0.961 27 H 0.258 0.742 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.082 0.918 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 4.566 -8.877 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.294 6.294 3 C 0.204 3.796 4 C -0.183 4.183 5 C -0.587 4.587 6 H 0.074 0.926 7 C -0.124 4.124 8 N -0.493 5.493 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.117 4.117 14 H 0.084 0.916 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.070 4.070 18 N -0.273 5.273 19 C -0.121 4.121 20 C -0.055 4.055 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.032 0.968 24 H 0.105 0.895 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.706 4.275 -8.756 9.769 hybrid contribution 0.342 0.785 0.947 1.277 sum -0.363 5.060 -7.809 9.312 Atomic orbital electron populations 1.22182 0.84921 0.98611 0.98837 1.87858 1.16654 1.30419 1.94469 1.18933 0.90642 0.80481 0.89501 1.21711 0.96059 0.99399 1.01127 1.21499 1.37608 1.08699 0.90900 0.92559 1.24970 0.94286 0.94447 0.98694 1.69994 1.37788 1.18616 1.22918 0.86782 0.78583 0.80460 0.83255 1.20690 1.21242 1.19903 1.21717 1.00158 0.93697 0.96107 0.91645 1.21647 1.00853 0.98719 0.94029 1.21607 1.00958 0.94609 0.98218 1.22032 0.96868 0.95416 0.92640 1.61980 1.60304 1.01896 1.03096 1.22294 0.97536 0.90267 1.01975 1.22170 0.97343 0.95050 0.90959 0.93356 0.94071 0.96756 0.89465 0.96415 0.94257 0.93169 0.92419 0.91919 0.92521 0.91761 0.95533 0.91893 0.92213 0.91543 0.96212 0.89961 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 10.31 101.05 1.04 2.20 16 2 O -0.38 -9.57 9.10 -35.23 -0.32 -9.89 16 3 C 0.24 5.88 0.19 -91.77 -0.02 5.87 16 4 C -0.13 -3.02 7.92 37.16 0.29 -2.72 16 5 C -0.55 -14.43 6.04 -34.44 -0.21 -14.64 16 6 H 0.06 1.49 6.72 -52.49 -0.35 1.13 16 7 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 8 N -0.86 -24.09 10.88 55.43 0.60 -23.49 16 9 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C -0.10 -2.03 1.29 -90.54 -0.12 -2.15 16 14 H 0.07 1.44 6.55 -51.93 -0.34 1.10 16 15 C -0.11 -2.12 4.81 -26.61 -0.13 -2.25 16 16 C -0.12 -1.79 6.09 -26.65 -0.16 -1.96 16 17 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 18 N -0.55 -9.26 4.91 -242.96 -1.19 -10.46 16 19 C 0.03 0.39 9.59 60.06 0.58 0.97 16 20 C 0.07 1.40 4.15 -3.83 -0.02 1.38 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.99 7.15 -51.93 -0.37 0.61 16 23 H 0.01 0.29 6.42 -51.93 -0.33 -0.04 16 24 H 0.09 2.34 6.09 -51.93 -0.32 2.02 16 25 H 0.02 0.38 6.38 -51.93 -0.33 0.05 16 26 H 0.04 0.89 6.41 -51.93 -0.33 0.56 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.06 1.09 6.32 -51.93 -0.33 0.76 16 29 H 0.06 1.20 7.76 -51.93 -0.40 0.79 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 1.73 6.64 -51.93 -0.34 1.39 16 38 H 0.03 0.63 6.38 -51.93 -0.33 0.30 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -28.08 283.03 -6.82 -34.90 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.30 Total: -0.83 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 1.15 Total: -10.34 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.59 Total: -33.95 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.32 Total: -9.89 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.08 -6.82 -34.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758534.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.987 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds