Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00164 * 2 1 4 4 C 1.52998 * 109.47225 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47156 * 59.99714 * 3 2 1 6 6 H 1.08000 * 119.99302 * 239.99994 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.72527 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47154 * 89.99418 * 9 7 5 11 11 H 1.48493 * 109.47010 * 209.99942 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99638 * 9 7 5 13 13 C 1.52998 * 109.46974 * 299.99508 * 3 2 1 14 14 H 1.08998 * 109.50101 * 60.08217 * 13 3 2 15 15 C 1.53117 * 109.50235 * 299.99930 * 13 3 2 16 16 C 1.53121 * 109.15756 * 182.40462 * 15 13 3 17 17 C 1.53039 * 109.27687 * 57.66169 * 16 15 13 18 18 N 1.46846 * 109.52006 * 300.81138 * 17 16 15 19 19 C 1.46898 * 111.00233 * 185.84385 * 18 17 16 20 20 C 1.46849 * 111.19492 * 61.74860 * 18 17 16 21 21 H 1.08991 * 109.47227 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47097 * 300.00881 * 1 2 3 23 23 H 1.09002 * 109.46565 * 60.00285 * 1 2 3 24 24 H 1.09005 * 109.47120 * 300.00252 * 4 3 2 25 25 H 1.09002 * 109.46792 * 60.00027 * 4 3 2 26 26 H 1.09002 * 109.47539 * 179.97438 * 4 3 2 27 27 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.52621 * 302.31209 * 15 13 3 29 29 H 1.09005 * 109.52340 * 62.43717 * 15 13 3 30 30 H 1.09004 * 109.50133 * 177.59169 * 16 15 13 31 31 H 1.08994 * 109.50445 * 297.71069 * 16 15 13 32 32 H 1.08994 * 109.46622 * 60.83145 * 17 16 15 33 33 H 1.09004 * 109.45717 * 180.81464 * 17 16 15 34 34 H 1.08999 * 109.46954 * 56.04614 * 19 18 17 35 35 H 1.08999 * 109.47556 * 176.04983 * 19 18 17 36 36 H 1.09005 * 109.47028 * 296.04953 * 19 18 17 37 37 H 1.09000 * 109.46433 * 178.24132 * 20 18 17 38 38 H 1.08995 * 109.46525 * 58.27450 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5656 2.0533 1.2305 6 1 1.0160 2.9777 1.1312 7 6 1.8554 1.5547 2.4827 8 7 2.5195 0.4260 2.6035 9 14 1.3035 2.4814 4.0079 10 1 -0.0487 2.0158 4.4078 11 1 2.2613 2.2288 5.1142 12 1 1.2592 3.9363 3.7140 13 6 1.5589 2.0646 -1.2493 14 1 0.4725 2.1522 -1.2491 15 6 2.0105 1.3053 -2.4999 16 6 1.6076 2.1016 -3.7441 17 6 2.2324 3.4970 -3.6751 18 7 1.7690 4.1826 -2.4620 19 6 2.2379 5.5744 -2.4322 20 6 2.1850 3.4611 -1.2525 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 3.8568 0.6438 0.8909 25 1 3.8574 0.6435 -0.8891 26 1 3.9789 2.1803 0.0002 27 1 2.7231 0.0748 3.4845 28 1 3.0934 1.1828 -2.4806 29 1 1.5335 0.3254 -2.5232 30 1 1.9641 1.5872 -4.6366 31 1 0.5220 2.1904 -3.7837 32 1 3.3184 3.4079 -3.6495 33 1 1.9356 4.0715 -4.5526 34 1 1.9122 6.0870 -3.3373 35 1 1.8230 6.0790 -1.5596 36 1 3.3264 5.5900 -2.3775 37 1 1.8541 4.0094 -0.3706 38 1 3.2713 3.3722 -1.2383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260758534.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -65.020781 kcal Electronic energy + Delta-G solvation = -17491.662021 eV Core-core repulsion = 14947.273302 eV Total energy + Delta-G solvation = -2544.388719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57584 -38.23074 -34.68220 -34.30539 -32.71824 -29.68268 -27.77631 -27.30086 -26.54402 -24.55215 -23.59427 -21.57457 -19.78877 -18.42855 -17.10919 -16.57655 -16.33412 -15.73828 -15.58120 -15.42240 -14.99262 -14.82116 -14.37009 -13.92444 -13.62161 -13.34296 -13.04032 -12.88349 -12.76670 -12.53424 -12.41864 -12.37189 -12.11551 -11.98468 -11.71908 -11.60983 -11.18379 -11.02104 -10.55317 -10.39585 -9.62856 -9.17688 -7.97413 -6.21327 1.39011 1.41977 1.49895 2.43405 3.06677 3.22738 3.73993 4.04928 4.09659 4.10334 4.34794 4.50637 4.58947 4.65365 4.73300 4.74949 4.83575 4.87825 4.92639 4.99091 5.01505 5.06245 5.09539 5.16739 5.18655 5.22224 5.35692 5.44747 5.58059 5.61665 5.74195 6.15345 6.21559 6.28986 6.33546 6.82663 7.21953 7.55922 9.00321 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.010233 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.343751 B = 2735.659850 C = 3247.166190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.399 6.399 3 C 0.234 3.766 4 C -0.117 4.117 5 C -0.554 4.554 6 H 0.049 0.951 7 C 0.038 3.962 8 N -0.885 5.885 9 Si 0.936 3.064 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.269 1.269 13 C -0.089 4.089 14 H 0.050 0.950 15 C -0.110 4.110 16 C -0.110 4.110 17 C 0.057 3.943 18 N -0.558 5.558 19 C 0.027 3.973 20 C 0.083 3.917 21 H 0.069 0.931 22 H 0.018 0.982 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.043 0.957 27 H 0.256 0.744 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.023 0.977 37 H 0.059 0.941 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 5.555 -10.469 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.318 6.318 3 C 0.196 3.804 4 C -0.174 4.174 5 C -0.592 4.592 6 H 0.067 0.933 7 C -0.165 4.165 8 N -0.523 5.523 9 Si 0.763 3.237 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.108 4.108 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.071 4.071 18 N -0.283 5.283 19 C -0.121 4.121 20 C -0.045 4.045 21 H 0.087 0.913 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.023 5.280 -10.359 11.672 hybrid contribution 0.421 0.482 1.407 1.545 sum -0.601 5.762 -8.953 10.663 Atomic orbital electron populations 1.22234 0.83590 0.99913 0.98491 1.87803 1.18203 1.31157 1.94633 1.19027 0.90566 0.80315 0.90473 1.21592 0.96315 0.99331 1.00198 1.21738 1.36946 1.08417 0.92053 0.93315 1.25597 0.94527 0.95168 1.01199 1.70124 1.39013 1.19914 1.23214 0.85914 0.78020 0.79525 0.80272 1.20620 1.21053 1.19395 1.21518 0.99125 0.94446 0.95744 0.93116 1.21576 1.00313 0.98477 0.94440 1.21581 1.01003 0.94678 0.97504 1.22140 0.96920 0.95377 0.92633 1.61956 1.60768 1.03029 1.02577 1.22371 0.97792 0.88739 1.03222 1.21888 0.96481 0.94310 0.91788 0.91262 0.96327 0.95077 0.92461 0.95105 0.93786 0.93413 0.92921 0.92807 0.89754 0.91853 0.95430 0.89027 0.89583 0.91901 0.95844 0.92234 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.44 10.31 113.37 1.17 3.61 16 2 O -0.40 -20.44 9.10 -148.98 -1.36 -21.80 16 3 C 0.23 11.44 0.19 -11.54 0.00 11.44 16 4 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 5 C -0.55 -29.47 6.04 25.60 0.15 -29.32 16 6 H 0.05 2.61 6.72 -2.91 -0.02 2.59 16 7 C 0.04 2.04 5.24 84.65 0.44 2.49 16 8 N -0.89 -50.67 10.88 21.45 0.23 -50.44 16 9 Si 0.94 43.28 29.54 68.60 2.03 45.30 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C -0.09 -3.67 1.29 -10.74 -0.01 -3.68 16 14 H 0.05 2.22 6.55 -2.39 -0.02 2.20 16 15 C -0.11 -3.91 4.81 30.67 0.15 -3.77 16 16 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 17 C 0.06 1.53 5.46 86.33 0.47 2.00 16 18 N -0.56 -17.65 4.91 -922.58 -4.53 -22.18 16 19 C 0.03 0.69 9.59 127.69 1.22 1.91 16 20 C 0.08 3.19 4.15 86.33 0.36 3.54 16 21 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 22 H 0.02 0.89 7.15 -2.39 -0.02 0.87 16 23 H 0.03 1.26 6.42 -2.39 -0.02 1.24 16 24 H 0.06 3.13 6.09 -2.38 -0.01 3.11 16 25 H 0.03 1.36 6.38 -2.39 -0.02 1.34 16 26 H 0.04 2.02 6.41 -2.39 -0.02 2.01 16 27 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.05 1.90 6.32 -2.39 -0.02 1.89 16 29 H 0.05 1.98 7.76 -2.38 -0.02 1.96 16 30 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 34 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.06 2.52 6.64 -2.39 -0.02 2.51 16 38 H 0.02 0.93 6.38 -2.39 -0.02 0.91 16 Total: -1.00 -59.82 283.03 2.10 -57.72 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.02 Total: 11.16 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 4.71 Total: -19.76 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -4.30 Total: -72.62 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.36 Total: -21.80 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -59.82 2.10 -57.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758534.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.302 kcal (2) G-P(sol) polarization free energy of solvation -59.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds