Wall clock time and date at job start Mon Mar 30 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46897 * 2 1 4 4 N 1.46499 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99903 * 82.33664 * 4 3 2 6 6 H 1.07996 * 120.00110 * 23.90735 * 5 4 3 7 7 C 1.38815 * 120.00172 * 203.91344 * 5 4 3 8 8 N 1.31621 * 120.00253 * 36.38007 * 7 5 4 9 9 Si 1.86797 * 120.00005 * 216.38534 * 7 5 4 10 10 H 1.48501 * 109.47175 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47260 * 299.99877 * 9 7 5 12 12 H 1.48507 * 109.47221 * 59.99657 * 9 7 5 13 13 C 1.46503 * 120.00160 * 262.33775 * 4 3 2 14 14 H 1.09000 * 110.01440 * 169.99999 * 13 4 3 15 15 C 1.54268 * 110.03163 * 48.56390 * 13 4 3 16 16 C 1.54891 * 104.19143 * 217.10431 * 15 13 4 17 17 C 1.54896 * 102.74966 * 37.94360 * 16 15 13 18 18 C 1.53872 * 110.02993 * 291.39352 * 13 4 3 19 19 C 1.52996 * 110.03485 * 0.02562 * 18 13 4 20 20 O 1.42902 * 110.03354 * 238.61549 * 18 13 4 21 21 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47595 * 300.00223 * 1 2 3 23 23 H 1.09008 * 109.46872 * 60.00127 * 1 2 3 24 24 H 1.08992 * 109.47595 * 239.99777 * 2 1 3 25 25 H 1.09006 * 109.46714 * 119.99352 * 2 1 3 26 26 H 1.08999 * 109.46930 * 60.00158 * 3 2 1 27 27 H 1.08994 * 109.47392 * 299.99712 * 3 2 1 28 28 H 0.97006 * 119.99665 * 8.02699 * 8 7 5 29 29 H 1.08999 * 110.48530 * 335.77930 * 15 13 4 30 30 H 1.08990 * 110.48651 * 98.42916 * 15 13 4 31 31 H 1.08994 * 110.75760 * 279.62777 * 16 15 13 32 32 H 1.09005 * 110.91558 * 156.32898 * 16 15 13 33 33 H 1.09001 * 110.48539 * 203.38000 * 17 16 15 34 34 H 1.08995 * 110.48902 * 80.73375 * 17 16 15 35 35 H 1.09003 * 109.46644 * 65.14916 * 19 18 13 36 36 H 1.09000 * 109.47413 * 185.14698 * 19 18 13 37 37 H 1.08999 * 109.47177 * 305.14994 * 19 18 13 38 38 H 0.96699 * 114.00033 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1901 1.2843 -1.1744 6 1 3.7200 1.5404 -2.1123 7 6 5.4889 0.7944 -1.1600 8 7 5.8329 -0.1331 -0.2918 9 14 6.7485 1.4518 -2.3727 10 1 8.0500 0.7715 -2.1521 11 1 6.2829 1.1931 -3.7589 12 1 6.9141 2.9137 -2.1709 13 6 4.2370 1.6119 1.2583 14 1 5.2970 1.4115 1.1029 15 6 3.6701 0.6602 2.3319 16 6 3.7397 1.4821 3.6429 17 6 3.3659 2.9095 3.1717 18 6 4.0436 3.0420 1.7922 19 6 3.1469 3.8392 0.8428 20 8 5.3103 3.6893 1.9282 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 5.1559 -0.5576 0.2582 29 1 2.6379 0.3965 2.1013 30 1 4.2854 -0.2360 2.4105 31 1 4.7476 1.4637 4.0574 32 1 3.0172 1.1143 4.3716 33 1 3.7593 3.6547 3.8631 34 1 2.2847 3.0090 3.0767 35 1 2.1475 3.4039 0.8359 36 1 3.0900 4.8742 1.1799 37 1 3.5641 3.8072 -0.1636 38 1 5.2553 4.5953 2.2616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308576347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:32 Heat of formation + Delta-G solvation = -33.256024 kcal Electronic energy + Delta-G solvation = -17677.816955 eV Core-core repulsion = 15134.805658 eV Total energy + Delta-G solvation = -2543.011296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.15156 -35.72473 -33.77125 -32.95471 -30.66934 -29.28207 -27.16090 -25.58424 -24.21762 -22.29108 -20.37598 -20.30685 -18.78972 -17.13895 -15.82482 -15.24992 -14.92262 -14.29339 -13.74535 -13.44167 -13.33487 -13.07616 -12.70082 -12.55370 -11.95324 -11.65376 -11.44895 -11.29130 -10.95224 -10.78387 -10.57820 -10.56154 -10.44775 -10.25301 -9.97384 -9.82322 -9.73284 -9.44420 -9.32007 -9.15041 -8.19211 -6.83996 -6.05733 -3.09755 3.56319 3.65053 3.79883 4.64501 4.87128 5.10752 5.22892 5.39006 5.50223 5.53026 5.63790 5.76808 5.88585 5.96886 5.99792 6.09151 6.10898 6.23763 6.25359 6.34376 6.42830 6.44585 6.50598 6.58382 6.66782 6.71413 6.75738 6.95810 7.01651 7.13256 7.18324 7.44567 8.11010 8.41385 8.63574 9.18358 9.92116 10.34047 11.20680 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.013792 C = 0.010263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.076996 B = 2029.725563 C = 2727.488534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.145 3.855 4 N -0.579 5.579 5 C -0.360 4.360 6 H 0.057 0.943 7 C -0.011 4.011 8 N -0.893 5.893 9 Si 1.044 2.956 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.293 1.293 13 C 0.178 3.822 14 H 0.109 0.891 15 C -0.139 4.139 16 C -0.120 4.120 17 C -0.148 4.148 18 C 0.106 3.894 19 C -0.165 4.165 20 O -0.553 6.553 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.270 0.730 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 4.732 5.648 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.189 4.189 3 C 0.019 3.981 4 N -0.299 5.299 5 C -0.488 4.488 6 H 0.075 0.925 7 C -0.215 4.215 8 N -0.532 5.532 9 Si 0.874 3.126 10 H -0.213 1.213 11 H -0.222 1.222 12 H -0.220 1.220 13 C 0.069 3.931 14 H 0.127 0.873 15 C -0.178 4.178 16 C -0.158 4.158 17 C -0.186 4.186 18 C 0.063 3.937 19 C -0.222 4.222 20 O -0.357 6.357 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.325 4.093 4.931 8.332 hybrid contribution -1.946 0.588 0.609 2.122 sum -7.271 4.681 5.540 10.270 Atomic orbital electron populations 1.21750 0.97656 1.00401 1.00723 1.22321 0.93350 1.01203 1.02075 1.21080 0.85397 0.93315 0.98271 1.43985 0.99371 1.82779 1.03746 1.19779 0.99714 1.43369 0.85956 0.92542 1.25539 0.98543 0.95346 1.02036 1.70771 1.38325 1.18776 1.25291 0.83863 0.76992 0.76523 0.75271 1.21299 1.22218 1.22018 1.20975 1.00058 0.87643 0.84409 0.87344 1.22953 1.01531 0.98853 0.94489 1.22386 1.00683 0.95256 0.97514 1.23058 1.00108 0.97620 0.97775 1.22760 0.82617 0.96151 0.92184 1.22582 1.00725 0.96853 1.02071 1.86701 1.30622 1.29848 1.88525 0.93812 0.93661 0.93379 0.92019 0.92530 0.93604 0.94450 0.91987 0.91184 0.91926 0.91801 0.92679 0.92378 0.91808 0.91353 0.95339 0.90347 0.79856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.15 -2.85 5.92 -26.73 -0.16 -3.00 16 3 C 0.15 2.94 3.14 -4.04 -0.01 2.93 16 4 N -0.58 -13.82 1.26 -164.39 -0.21 -14.03 16 5 C -0.36 -9.87 9.14 -15.06 -0.14 -10.01 16 6 H 0.06 1.58 8.03 -52.49 -0.42 1.16 16 7 C -0.01 -0.31 4.46 -17.43 -0.08 -0.39 16 8 N -0.89 -26.52 12.08 55.49 0.67 -25.84 16 9 Si 1.04 25.80 30.04 -169.99 -5.11 20.70 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C 0.18 4.09 2.11 -66.81 -0.14 3.95 16 14 H 0.11 3.03 5.40 -51.93 -0.28 2.75 16 15 C -0.14 -2.80 6.01 -25.07 -0.15 -2.95 16 16 C -0.12 -2.03 6.91 -24.73 -0.17 -2.21 16 17 C -0.15 -2.41 6.09 -25.07 -0.15 -2.57 16 18 C 0.11 2.08 1.23 -89.50 -0.11 1.97 16 19 C -0.17 -3.09 7.42 37.16 0.28 -2.82 16 20 O -0.55 -11.22 12.90 -35.23 -0.45 -11.67 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.06 1.10 5.94 -51.93 -0.31 0.80 16 26 H 0.05 0.85 5.49 -51.93 -0.28 0.57 16 27 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.27 8.00 7.42 -40.82 -0.30 7.70 16 29 H 0.07 1.36 4.40 -51.93 -0.23 1.13 16 30 H 0.06 1.33 7.95 -51.93 -0.41 0.92 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 35 H 0.07 1.22 4.56 -51.93 -0.24 0.98 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.72 7.39 -51.93 -0.38 1.34 16 38 H 0.36 5.38 9.07 45.56 0.41 5.80 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -29.83 286.51 -6.69 -36.52 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.44 Total: 6.95 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.47 Total: -16.93 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.46 Total: -39.87 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.45 Total: -11.67 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.11 Total: 20.70 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.83 -6.69 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308576347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.265 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds