Wall clock time and date at job start Mon Mar 30 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46897 * 2 1 4 4 N 1.46499 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99903 * 82.33664 * 4 3 2 6 6 H 1.07996 * 120.00110 * 23.90735 * 5 4 3 7 7 C 1.38815 * 120.00172 * 203.91344 * 5 4 3 8 8 N 1.31621 * 120.00253 * 36.38007 * 7 5 4 9 9 Si 1.86797 * 120.00005 * 216.38534 * 7 5 4 10 10 H 1.48501 * 109.47175 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47260 * 299.99877 * 9 7 5 12 12 H 1.48507 * 109.47221 * 59.99657 * 9 7 5 13 13 C 1.46503 * 120.00160 * 262.33775 * 4 3 2 14 14 H 1.09000 * 110.01440 * 169.99999 * 13 4 3 15 15 C 1.54268 * 110.03163 * 48.56390 * 13 4 3 16 16 C 1.54891 * 104.19143 * 217.10431 * 15 13 4 17 17 C 1.54896 * 102.74966 * 37.94360 * 16 15 13 18 18 C 1.53872 * 110.02993 * 291.39352 * 13 4 3 19 19 C 1.52996 * 110.03485 * 0.02562 * 18 13 4 20 20 O 1.42902 * 110.03354 * 238.61549 * 18 13 4 21 21 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47595 * 300.00223 * 1 2 3 23 23 H 1.09008 * 109.46872 * 60.00127 * 1 2 3 24 24 H 1.08992 * 109.47595 * 239.99777 * 2 1 3 25 25 H 1.09006 * 109.46714 * 119.99352 * 2 1 3 26 26 H 1.08999 * 109.46930 * 60.00158 * 3 2 1 27 27 H 1.08994 * 109.47392 * 299.99712 * 3 2 1 28 28 H 0.97006 * 119.99665 * 8.02699 * 8 7 5 29 29 H 1.08999 * 110.48530 * 335.77930 * 15 13 4 30 30 H 1.08990 * 110.48651 * 98.42916 * 15 13 4 31 31 H 1.08994 * 110.75760 * 279.62777 * 16 15 13 32 32 H 1.09005 * 110.91558 * 156.32898 * 16 15 13 33 33 H 1.09001 * 110.48539 * 203.38000 * 17 16 15 34 34 H 1.08995 * 110.48902 * 80.73375 * 17 16 15 35 35 H 1.09003 * 109.46644 * 65.14916 * 19 18 13 36 36 H 1.09000 * 109.47413 * 185.14698 * 19 18 13 37 37 H 1.08999 * 109.47177 * 305.14994 * 19 18 13 38 38 H 0.96699 * 114.00033 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1901 1.2843 -1.1744 6 1 3.7200 1.5404 -2.1123 7 6 5.4889 0.7944 -1.1600 8 7 5.8329 -0.1331 -0.2918 9 14 6.7485 1.4518 -2.3727 10 1 8.0500 0.7715 -2.1521 11 1 6.2829 1.1931 -3.7589 12 1 6.9141 2.9137 -2.1709 13 6 4.2370 1.6119 1.2583 14 1 5.2970 1.4115 1.1029 15 6 3.6701 0.6602 2.3319 16 6 3.7397 1.4821 3.6429 17 6 3.3659 2.9095 3.1717 18 6 4.0436 3.0420 1.7922 19 6 3.1469 3.8392 0.8428 20 8 5.3103 3.6893 1.9282 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 5.1559 -0.5576 0.2582 29 1 2.6379 0.3965 2.1013 30 1 4.2854 -0.2360 2.4105 31 1 4.7476 1.4637 4.0574 32 1 3.0172 1.1143 4.3716 33 1 3.7593 3.6547 3.8631 34 1 2.2847 3.0090 3.0767 35 1 2.1475 3.4039 0.8359 36 1 3.0900 4.8742 1.1799 37 1 3.5641 3.8072 -0.1636 38 1 5.2553 4.5953 2.2616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308576347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:32 Heat of formation + Delta-G solvation = -52.655062 kcal Electronic energy + Delta-G solvation = -17678.658160 eV Core-core repulsion = 15134.805658 eV Total energy + Delta-G solvation = -2543.852502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75319 -37.40286 -35.30680 -34.75857 -32.41039 -30.87232 -28.75914 -27.25986 -25.85510 -24.03021 -21.98466 -21.76022 -20.56864 -19.04890 -17.38967 -16.86108 -16.55388 -15.88325 -15.61402 -15.21966 -14.86390 -14.70020 -14.21406 -13.98755 -13.56529 -13.24731 -13.08427 -12.77984 -12.62210 -12.36423 -12.21315 -12.11894 -11.99570 -11.93779 -11.78388 -11.62184 -11.23055 -11.14092 -11.11486 -10.64118 -10.27891 -8.82626 -8.23222 -5.23103 1.53829 1.62794 1.79895 2.66876 3.12158 3.39829 3.57507 3.82209 4.01523 4.12495 4.18607 4.37273 4.38207 4.51168 4.58628 4.61893 4.75245 4.80567 4.84479 4.88082 4.95819 4.99637 5.08386 5.16854 5.23702 5.24669 5.29558 5.38761 5.44015 5.50465 5.63188 5.69021 5.95331 6.45279 7.09967 7.15627 7.89994 8.30134 9.00500 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.013792 C = 0.010263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.076996 B = 2029.725563 C = 2727.488534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.146 3.854 4 N -0.590 5.590 5 C -0.355 4.355 6 H 0.044 0.956 7 C -0.062 4.062 8 N -0.921 5.921 9 Si 1.087 2.913 10 H -0.295 1.295 11 H -0.276 1.276 12 H -0.291 1.291 13 C 0.169 3.831 14 H 0.054 0.946 15 C -0.136 4.136 16 C -0.114 4.114 17 C -0.134 4.134 18 C 0.102 3.898 19 C -0.156 4.156 20 O -0.580 6.580 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.256 0.744 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 6.272 7.023 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.022 3.978 4 N -0.311 5.311 5 C -0.484 4.484 6 H 0.061 0.939 7 C -0.261 4.261 8 N -0.562 5.562 9 Si 0.914 3.086 10 H -0.221 1.221 11 H -0.202 1.202 12 H -0.218 1.218 13 C 0.062 3.938 14 H 0.072 0.928 15 C -0.175 4.175 16 C -0.151 4.151 17 C -0.172 4.172 18 C 0.060 3.940 19 C -0.213 4.213 20 O -0.388 6.388 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.385 5.658 6.312 11.243 hybrid contribution -1.333 0.136 0.175 1.351 sum -8.718 5.794 6.487 12.315 Atomic orbital electron populations 1.21662 0.93965 1.01773 1.02145 1.22192 0.96526 0.99664 0.99921 1.21188 0.83245 0.94237 0.99177 1.44087 1.00841 1.83029 1.03131 1.19907 1.00070 1.41433 0.87015 0.93860 1.26550 1.00554 0.95608 1.03387 1.70857 1.37822 1.20566 1.26951 0.83242 0.74888 0.75810 0.74668 1.22106 1.20225 1.21766 1.20963 0.97103 0.90860 0.84923 0.92827 1.22855 1.01060 0.97774 0.95764 1.22374 1.01378 0.95206 0.96176 1.22976 1.01069 0.97616 0.95552 1.22649 0.82905 0.93950 0.94542 1.22456 1.00444 0.98835 0.99558 1.86648 1.31335 1.31767 1.89003 0.92554 0.91432 0.92707 0.95630 0.93314 0.90994 0.94956 0.93397 0.90281 0.94660 0.92625 0.89373 0.89722 0.89599 0.90379 0.92088 0.94435 0.77219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.14 -5.36 5.92 30.59 0.18 -5.18 16 3 C 0.15 5.79 3.14 86.38 0.27 6.06 16 4 N -0.59 -28.63 1.26 -674.02 -0.85 -29.48 16 5 C -0.35 -20.07 9.14 84.03 0.77 -19.30 16 6 H 0.04 2.51 8.03 -2.91 -0.02 2.49 16 7 C -0.06 -3.65 4.46 84.86 0.38 -3.27 16 8 N -0.92 -57.32 12.08 21.65 0.26 -57.06 16 9 Si 1.09 53.88 30.04 68.60 2.06 55.94 16 10 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 13 C 0.17 7.90 2.11 45.72 0.10 8.00 16 14 H 0.05 3.13 5.40 -2.39 -0.01 3.12 16 15 C -0.14 -5.41 6.01 31.67 0.19 -5.22 16 16 C -0.11 -3.52 6.91 31.89 0.22 -3.30 16 17 C -0.13 -3.83 6.09 31.67 0.19 -3.64 16 18 C 0.10 3.84 1.23 -10.07 -0.01 3.82 16 19 C -0.16 -5.47 7.42 71.98 0.53 -4.94 16 20 O -0.58 -22.89 12.90 -148.98 -1.92 -24.82 16 21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.88 5.94 -2.38 -0.01 1.87 16 26 H 0.07 2.46 5.49 -2.39 -0.01 2.45 16 27 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 28 H 0.26 16.12 7.42 -92.70 -0.69 15.43 16 29 H 0.08 2.96 4.40 -2.39 -0.01 2.95 16 30 H 0.03 1.55 7.95 -2.39 -0.02 1.53 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 34 H 0.09 2.12 7.75 -2.39 -0.02 2.10 16 35 H 0.08 2.54 4.56 -2.39 -0.01 2.53 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.61 7.39 -2.39 -0.02 1.59 16 38 H 0.38 10.55 9.07 -74.06 -0.67 9.88 16 Total: -1.00 -68.19 286.51 3.53 -64.66 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.45 Total: 20.79 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.53 Total: -30.03 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -0.58 Total: -86.54 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.92 Total: -24.82 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 2.06 Total: 55.94 kcal Total: -68.19 3.53 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308576347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.001 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds