Wall clock time and date at job start Mon Mar 30 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 N 1.46500 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99866 * 269.99434 * 4 3 2 6 6 H 1.07998 * 119.99981 * 145.40102 * 5 4 3 7 7 C 1.38816 * 119.99983 * 325.40386 * 5 4 3 8 8 N 1.31619 * 119.99726 * 338.08507 * 7 5 4 9 9 Si 1.86801 * 119.99932 * 158.08472 * 7 5 4 10 10 H 1.48494 * 109.46944 * 60.00193 * 9 7 5 11 11 H 1.48504 * 109.46796 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47094 * 300.00075 * 9 7 5 13 13 C 1.46497 * 120.00257 * 89.99839 * 4 3 2 14 14 H 1.08999 * 110.05741 * 352.87370 * 13 4 3 15 15 C 1.54272 * 110.02979 * 231.46061 * 13 4 3 16 16 C 1.54891 * 104.19416 * 264.32270 * 15 13 4 17 17 C 1.54896 * 102.75074 * 322.05837 * 16 15 13 18 18 C 1.53869 * 110.03451 * 114.29156 * 13 4 3 19 19 C 1.53000 * 110.03330 * 238.61711 * 18 13 4 20 20 O 1.42902 * 110.03130 * 0.02562 * 18 13 4 21 21 H 1.08999 * 109.47156 * 300.00426 * 1 2 3 22 22 H 1.09005 * 109.47130 * 60.00319 * 1 2 3 23 23 H 1.09002 * 109.47419 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47156 * 239.99574 * 2 1 3 25 25 H 1.09009 * 109.46709 * 119.99458 * 2 1 3 26 26 H 1.08999 * 109.47452 * 59.99755 * 3 2 1 27 27 H 1.08996 * 109.46829 * 299.99600 * 3 2 1 28 28 H 0.96998 * 119.99497 * 175.92886 * 8 7 5 29 29 H 1.09001 * 110.48870 * 22.99988 * 15 13 4 30 30 H 1.08996 * 110.48411 * 145.64872 * 15 13 4 31 31 H 1.09001 * 110.75460 * 80.36989 * 16 15 13 32 32 H 1.09000 * 110.75650 * 203.74812 * 16 15 13 33 33 H 1.09001 * 110.48738 * 279.26796 * 17 16 15 34 34 H 1.08995 * 110.48592 * 156.61577 * 17 16 15 35 35 H 1.09001 * 109.47202 * 180.69341 * 19 18 13 36 36 H 1.09001 * 109.47209 * 300.68668 * 19 18 13 37 37 H 1.08997 * 109.47161 * 60.68915 * 19 18 13 38 38 H 0.96702 * 113.99425 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4424 1.1851 6 1 5.1269 0.9113 1.2674 7 6 3.6806 2.1249 2.2812 8 7 2.8132 3.0990 2.1048 9 14 4.2261 1.6610 4.0065 10 1 5.6957 1.8377 4.1252 11 1 3.5416 2.5342 4.9936 12 1 3.8751 0.2428 4.2720 13 6 4.2370 1.4426 -1.2696 14 1 3.5437 1.3157 -2.1011 15 6 5.2832 0.3089 -1.2762 16 6 6.5955 1.0005 -0.8304 17 6 6.5078 2.3813 -1.5268 18 6 5.0155 2.7602 -1.4289 19 6 4.5719 3.4803 -2.7039 20 8 4.7973 3.5982 -0.2921 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 2.4125 3.5363 2.8723 29 1 5.0042 -0.4719 -0.5687 30 1 5.3915 -0.1044 -2.2789 31 1 6.6228 1.1154 0.2532 32 1 7.4642 0.4446 -1.1831 33 1 6.8138 2.3026 -2.5700 34 1 7.1223 3.1128 -1.0021 35 1 5.1374 4.4056 -2.8141 36 1 4.7540 2.8384 -3.5658 37 1 3.5083 3.7098 -2.6401 38 1 5.2620 4.4453 -0.3331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308576348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:36 Heat of formation + Delta-G solvation = -51.713300 kcal Electronic energy + Delta-G solvation = -17578.505215 eV Core-core repulsion = 15034.693551 eV Total energy + Delta-G solvation = -2543.811664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20490 -36.97467 -35.22859 -33.91438 -32.21603 -31.01966 -28.51832 -27.18463 -25.88077 -23.77163 -21.78099 -21.51407 -20.42524 -18.15773 -17.35387 -16.63929 -16.04174 -15.92229 -15.48441 -15.00296 -14.55790 -14.23244 -14.02629 -13.77716 -13.50354 -13.03322 -12.90776 -12.70841 -12.50674 -12.40122 -12.25076 -12.06081 -12.03910 -11.77368 -11.71520 -11.36174 -11.22194 -11.12306 -11.04392 -10.29908 -10.13473 -8.26406 -7.46939 -5.05111 1.48916 1.51530 1.55557 2.67304 3.49650 3.62010 3.83909 4.02466 4.13663 4.32742 4.38078 4.53339 4.55172 4.61928 4.69712 4.75970 4.78368 4.93776 4.98988 5.04462 5.12991 5.16224 5.18552 5.24663 5.31422 5.36687 5.42673 5.50734 5.58582 5.64908 5.71786 5.96808 6.07067 6.71768 7.40102 7.50872 8.16889 8.68005 9.45921 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.013717 C = 0.010423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.669477 B = 2040.833828 C = 2685.706112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.146 3.854 4 N -0.571 5.571 5 C -0.201 4.201 6 H 0.053 0.947 7 C -0.036 4.036 8 N -0.902 5.902 9 Si 0.925 3.075 10 H -0.285 1.285 11 H -0.303 1.303 12 H -0.289 1.289 13 C 0.168 3.832 14 H 0.057 0.943 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.135 4.135 18 C 0.097 3.903 19 C -0.160 4.160 20 O -0.518 6.518 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.012 0.988 28 H 0.233 0.767 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 -2.878 -9.640 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.019 3.981 4 N -0.290 5.290 5 C -0.332 4.332 6 H 0.071 0.929 7 C -0.232 4.232 8 N -0.548 5.548 9 Si 0.757 3.243 10 H -0.212 1.212 11 H -0.229 1.229 12 H -0.216 1.216 13 C 0.060 3.940 14 H 0.075 0.925 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.173 4.173 18 C 0.053 3.947 19 C -0.218 4.218 20 O -0.319 6.319 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.914 -3.244 -9.342 10.310 hybrid contribution 0.453 0.574 1.140 1.355 sum 3.367 -2.670 -8.201 9.259 Atomic orbital electron populations 1.21629 0.95272 1.01442 1.01163 1.21941 0.95624 0.99470 0.99767 1.20904 0.83887 0.93475 0.99803 1.43771 1.00535 1.83996 1.00653 1.18870 1.04887 1.21237 0.88174 0.92906 1.25363 1.01806 0.95850 1.00160 1.70226 1.34032 1.22785 1.27787 0.86002 0.77570 0.77034 0.83741 1.21168 1.22936 1.21570 1.21417 0.92547 0.91479 0.88558 0.92501 1.22669 0.95614 0.97721 1.00425 1.22391 0.97169 0.96033 0.99614 1.22951 0.96215 0.97411 1.00727 1.22570 0.93940 0.92654 0.85511 1.22398 1.00605 1.00901 0.97853 1.87349 1.72995 1.29796 1.41724 0.94128 0.92487 0.91816 0.93287 0.94748 0.91620 0.96966 0.95700 0.93214 0.90279 0.93699 0.90833 0.89668 0.92346 0.91933 0.90585 0.94413 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.91 71.98 0.71 -3.87 16 2 C -0.13 -5.20 6.26 30.59 0.19 -5.01 16 3 C 0.15 7.00 5.25 86.38 0.45 7.46 16 4 N -0.57 -27.74 1.92 -674.02 -1.30 -29.04 16 5 C -0.20 -10.78 6.79 84.03 0.57 -10.21 16 6 H 0.05 2.89 5.39 -2.91 -0.02 2.87 16 7 C -0.04 -2.03 4.97 84.86 0.42 -1.61 16 8 N -0.90 -53.60 11.29 21.65 0.24 -53.35 16 9 Si 0.93 46.31 29.61 68.60 2.03 48.34 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 12 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 13 C 0.17 6.74 3.11 45.72 0.14 6.88 16 14 H 0.06 2.18 7.43 -2.39 -0.02 2.17 16 15 C -0.13 -4.40 5.89 31.67 0.19 -4.21 16 16 C -0.11 -3.86 6.52 31.89 0.21 -3.65 16 17 C -0.14 -4.19 6.09 31.67 0.19 -4.00 16 18 C 0.10 3.54 1.25 -10.07 -0.01 3.53 16 19 C -0.16 -4.83 8.49 71.98 0.61 -4.22 16 20 O -0.52 -23.53 10.61 -148.98 -1.58 -25.11 16 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.07 3.68 5.32 -2.39 -0.01 3.67 16 27 H 0.01 0.56 8.00 -2.39 -0.02 0.55 16 28 H 0.23 13.81 8.32 -92.71 -0.77 13.04 16 29 H 0.05 1.95 7.71 -2.39 -0.02 1.93 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.04 1.82 6.19 -2.39 -0.01 1.81 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.14 7.85 -2.39 -0.02 2.12 16 34 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.35 13.31 9.06 -74.06 -0.67 12.63 16 Total: -1.00 -63.22 294.01 3.42 -59.80 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.35 Total: 18.27 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 3.68 Total: -18.90 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -1.05 Total: -82.39 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.58 Total: -25.11 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -63.22 3.42 -59.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308576348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.085 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds