Wall clock time and date at job start Mon Mar 30 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52996 * 109.46972 * 59.99538 * 4 2 1 6 6 C 1.53001 * 109.47486 * 60.00463 * 5 4 2 7 7 C 1.53002 * 109.46637 * 299.99742 * 6 5 4 8 8 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 9 9 H 1.08996 * 109.47853 * 180.02562 * 8 2 1 10 10 N 1.46902 * 109.47094 * 59.99827 * 8 2 1 11 11 C 1.46904 * 110.99949 * 154.99749 * 10 8 2 12 12 C 1.52997 * 109.47280 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46978 * 59.99938 * 12 11 10 14 14 O 1.42901 * 109.46985 * 300.00405 * 12 11 10 15 15 C 1.50701 * 109.47527 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99855 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00380 * 180.02562 * 15 12 11 18 18 N 1.31511 * 119.99574 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99934 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46982 * 89.99838 * 19 17 15 21 21 H 1.48506 * 109.46959 * 209.99622 * 19 17 15 22 22 H 1.48494 * 109.47214 * 329.99508 * 19 17 15 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.46986 * 299.99797 * 4 2 1 28 28 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 29 29 H 1.09004 * 109.47298 * 300.00176 * 5 4 2 30 30 H 1.08996 * 109.46778 * 59.99584 * 6 5 4 31 31 H 1.08992 * 109.47514 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46986 * 179.97438 * 7 6 5 33 33 H 1.08993 * 109.47662 * 299.99908 * 7 6 5 34 34 H 1.00900 * 110.99581 * 31.04993 * 10 8 2 35 35 H 1.08997 * 109.47604 * 300.00545 * 11 10 8 36 36 H 1.09006 * 109.46967 * 60.00497 * 11 10 8 37 37 H 0.96698 * 114.00333 * 299.99595 * 14 12 11 38 38 H 0.97008 * 119.99581 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2492 9 1 3.1299 -0.7217 -1.2491 10 7 1.5503 -0.0288 -2.4487 11 6 2.4340 -0.2746 -3.5961 12 6 1.8930 0.4615 -4.8234 13 1 1.8539 1.5311 -4.6175 14 8 0.5793 -0.0141 -5.1234 15 6 2.7992 0.2088 -6.0007 16 1 3.6738 -0.4142 -5.8851 17 6 2.5123 0.7738 -7.2253 18 7 1.4476 1.5328 -7.3660 19 14 3.6360 0.4611 -8.6843 20 1 3.1760 -0.7482 -9.4131 21 1 3.6002 1.6324 -9.5966 22 1 5.0250 0.2508 -8.2032 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 -0.7209 1.2495 27 1 1.6767 -0.2075 2.1392 28 1 1.8929 -2.6775 2.1394 29 1 0.4399 -2.1637 1.2492 30 1 3.1299 -2.8851 0.0000 31 1 1.6769 -3.9128 0.0002 32 1 1.8935 -2.6774 -2.1392 33 1 0.4399 -2.1637 -1.2492 34 1 1.4460 0.9602 -2.2779 35 1 3.4359 0.0885 -3.3675 36 1 2.4733 -1.3444 -3.8018 37 1 0.5383 -0.9606 -5.3174 38 1 1.2460 1.9306 -8.2275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308666349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:20 Heat of formation + Delta-G solvation = -78.265195 kcal Electronic energy + Delta-G solvation = -16478.476137 eV Core-core repulsion = 13933.513097 eV Total energy + Delta-G solvation = -2544.963040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.27714 -36.08172 -33.74171 -32.03600 -31.78494 -29.62373 -27.47910 -26.07648 -24.07736 -22.12109 -21.39814 -20.38836 -18.33853 -16.85432 -15.83621 -15.08439 -14.75959 -14.54738 -14.36689 -13.96657 -13.58531 -13.23567 -12.98524 -12.58894 -12.23313 -12.02285 -11.66964 -11.52311 -11.27651 -11.00813 -10.92411 -10.85164 -10.77873 -10.63569 -10.29603 -10.02369 -9.91599 -9.78869 -8.93080 -8.55066 -8.01052 -7.66200 -5.97158 -4.15396 3.29347 3.36175 3.38787 4.38582 4.62147 4.79068 4.79449 5.11624 5.28934 5.30699 5.41734 5.42848 5.54699 5.63991 5.68852 5.78261 5.89717 6.05382 6.08701 6.13136 6.13636 6.20160 6.24363 6.33982 6.45123 6.47332 6.52165 6.60501 6.75447 6.91841 7.71886 7.74820 7.89308 8.04829 8.25714 8.88789 9.50351 9.66984 11.07007 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051395 B = 0.005561 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.671069 B = 5034.244677 C = 5245.267371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.091 3.909 9 H 0.033 0.967 10 N -0.674 5.674 11 C 0.035 3.965 12 C 0.235 3.765 13 H 0.050 0.950 14 O -0.554 6.554 15 C -0.573 4.573 16 H 0.054 0.946 17 C 0.079 3.921 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.335 0.665 35 H 0.019 0.981 36 H 0.059 0.941 37 H 0.343 0.657 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 -5.573 15.280 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.019 4.019 9 H 0.051 0.949 10 N -0.305 5.305 11 C -0.094 4.094 12 C 0.177 3.823 13 H 0.068 0.932 14 O -0.356 6.356 15 C -0.612 4.612 16 H 0.072 0.928 17 C -0.127 4.127 18 N -0.495 5.495 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.153 0.847 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.186 0.814 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.188 -5.300 15.085 15.990 hybrid contribution 1.750 -0.150 -0.753 1.911 sum 1.562 -5.450 14.332 15.412 Atomic orbital electron populations 1.21831 0.94534 1.02133 1.01435 1.21256 0.96975 0.98573 0.94309 0.91827 1.21538 1.00240 0.95788 0.97424 1.21564 1.01103 0.95532 0.97519 1.21541 1.00438 0.98707 0.95019 1.21536 1.01600 0.94697 0.96669 1.21498 0.96148 0.94499 0.89723 0.94937 1.60516 1.51315 1.15197 1.03491 1.22915 0.92977 1.00960 0.92500 1.19290 0.81308 0.93467 0.88262 0.93214 1.86546 1.30997 1.26070 1.91996 1.21658 1.11006 1.32962 0.95541 0.92804 1.25026 0.94692 0.94178 0.98763 1.70088 1.24794 1.30514 1.24089 0.86683 0.81196 0.77870 0.82666 1.20514 1.21132 1.19927 0.93903 0.91373 0.92232 0.92395 0.92245 0.92656 0.91615 0.92523 0.92288 0.92261 0.91043 0.84692 0.96322 0.92259 0.81430 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.34 37.16 0.31 -1.46 16 2 C -0.09 -1.16 2.57 -90.62 -0.23 -1.39 16 3 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 4 C -0.11 -1.20 5.45 -26.73 -0.15 -1.34 16 5 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 6 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 7 C -0.11 -1.49 5.15 -26.73 -0.14 -1.63 16 8 C 0.09 1.36 2.18 -67.71 -0.15 1.21 16 9 H 0.03 0.51 7.80 -51.93 -0.41 0.11 16 10 N -0.67 -12.10 5.46 -106.72 -0.58 -12.68 16 11 C 0.04 0.74 5.09 -3.82 -0.02 0.72 16 12 C 0.23 6.03 3.03 -27.88 -0.08 5.95 16 13 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 14 O -0.55 -14.67 12.59 -35.23 -0.44 -15.11 16 15 C -0.57 -15.96 8.76 -34.44 -0.30 -16.26 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 18 N -0.86 -25.75 12.84 55.43 0.71 -25.04 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.97 7.48 -51.93 -0.39 0.58 16 25 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 33 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 34 H 0.33 6.02 8.19 -39.29 -0.32 5.69 16 35 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.06 1.24 7.44 -51.93 -0.39 0.86 16 37 H 0.34 8.24 9.04 45.56 0.41 8.66 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -29.69 293.58 -7.81 -37.50 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.73 Total: 9.49 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.17 Total: -14.93 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.13 Total: -37.73 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.44 Total: -15.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.69 -7.81 -37.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308666349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.762 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds