Wall clock time and date at job start Mon Mar 30 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52996 * 109.46972 * 59.99538 * 4 2 1 6 6 C 1.53001 * 109.47486 * 60.00463 * 5 4 2 7 7 C 1.53002 * 109.46637 * 299.99742 * 6 5 4 8 8 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 9 9 H 1.08996 * 109.47853 * 180.02562 * 8 2 1 10 10 N 1.46902 * 109.47094 * 59.99827 * 8 2 1 11 11 C 1.46904 * 110.99949 * 154.99749 * 10 8 2 12 12 C 1.52997 * 109.47280 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46978 * 59.99938 * 12 11 10 14 14 O 1.42901 * 109.46985 * 300.00405 * 12 11 10 15 15 C 1.50701 * 109.47527 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99855 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00380 * 180.02562 * 15 12 11 18 18 N 1.31511 * 119.99574 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99934 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46982 * 89.99838 * 19 17 15 21 21 H 1.48506 * 109.46959 * 209.99622 * 19 17 15 22 22 H 1.48494 * 109.47214 * 329.99508 * 19 17 15 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.46986 * 299.99797 * 4 2 1 28 28 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 29 29 H 1.09004 * 109.47298 * 300.00176 * 5 4 2 30 30 H 1.08996 * 109.46778 * 59.99584 * 6 5 4 31 31 H 1.08992 * 109.47514 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46986 * 179.97438 * 7 6 5 33 33 H 1.08993 * 109.47662 * 299.99908 * 7 6 5 34 34 H 1.00900 * 110.99581 * 31.04993 * 10 8 2 35 35 H 1.08997 * 109.47604 * 300.00545 * 11 10 8 36 36 H 1.09006 * 109.46967 * 60.00497 * 11 10 8 37 37 H 0.96698 * 114.00333 * 299.99595 * 14 12 11 38 38 H 0.97008 * 119.99581 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2492 9 1 3.1299 -0.7217 -1.2491 10 7 1.5503 -0.0288 -2.4487 11 6 2.4340 -0.2746 -3.5961 12 6 1.8930 0.4615 -4.8234 13 1 1.8539 1.5311 -4.6175 14 8 0.5793 -0.0141 -5.1234 15 6 2.7992 0.2088 -6.0007 16 1 3.6738 -0.4142 -5.8851 17 6 2.5123 0.7738 -7.2253 18 7 1.4476 1.5328 -7.3660 19 14 3.6360 0.4611 -8.6843 20 1 3.1760 -0.7482 -9.4131 21 1 3.6002 1.6324 -9.5966 22 1 5.0250 0.2508 -8.2032 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 -0.7209 1.2495 27 1 1.6767 -0.2075 2.1392 28 1 1.8929 -2.6775 2.1394 29 1 0.4399 -2.1637 1.2492 30 1 3.1299 -2.8851 0.0000 31 1 1.6769 -3.9128 0.0002 32 1 1.8935 -2.6774 -2.1392 33 1 0.4399 -2.1637 -1.2492 34 1 1.4460 0.9602 -2.2779 35 1 3.4359 0.0885 -3.3675 36 1 2.4733 -1.3444 -3.8018 37 1 0.5383 -0.9606 -5.3174 38 1 1.2460 1.9306 -8.2275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308666349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:20 Heat of formation + Delta-G solvation = -99.137359 kcal Electronic energy + Delta-G solvation = -16479.381222 eV Core-core repulsion = 13933.513097 eV Total energy + Delta-G solvation = -2545.868125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37807 -37.96003 -35.26409 -34.20838 -32.80229 -31.01778 -29.12671 -27.29647 -25.83637 -23.25824 -22.59834 -22.10285 -19.39424 -18.97373 -17.08892 -16.66656 -16.42903 -16.21274 -15.56961 -15.54032 -15.02453 -14.63806 -14.55718 -13.75867 -13.45094 -13.37549 -13.20753 -12.82701 -12.77881 -12.75576 -12.47867 -12.35822 -12.04687 -11.95836 -11.85662 -11.21773 -11.03008 -10.93845 -10.83840 -10.71672 -10.04571 -9.16852 -8.13730 -6.40139 1.40158 1.40545 1.51571 2.38346 3.12011 3.30450 3.77533 3.83536 4.10999 4.29466 4.32360 4.39575 4.42167 4.51028 4.54316 4.63077 4.65754 4.68576 4.86091 4.99503 5.05102 5.08273 5.13336 5.18306 5.28114 5.29420 5.43601 5.46744 5.50802 5.60171 5.71212 5.75969 6.05410 6.27826 6.55959 6.74212 7.34206 7.61108 8.90812 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051395 B = 0.005561 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.671069 B = 5034.244677 C = 5245.267371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.104 4.104 8 C 0.090 3.910 9 H 0.026 0.974 10 N -0.678 5.678 11 C 0.057 3.943 12 C 0.235 3.765 13 H 0.017 0.983 14 O -0.569 6.569 15 C -0.589 4.589 16 H 0.057 0.943 17 C 0.026 3.974 18 N -0.900 5.900 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.333 0.667 35 H 0.016 0.984 36 H 0.060 0.940 37 H 0.352 0.648 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -6.607 16.461 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.143 4.143 8 C -0.019 4.019 9 H 0.044 0.956 10 N -0.308 5.308 11 C -0.072 4.072 12 C 0.177 3.823 13 H 0.035 0.965 14 O -0.372 6.372 15 C -0.628 4.628 16 H 0.075 0.925 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.190 1.190 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.196 0.804 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.565 -6.351 16.286 17.490 hybrid contribution 1.482 0.180 -1.086 1.846 sum 2.047 -6.171 15.200 16.532 Atomic orbital electron populations 1.21780 0.94378 1.02146 1.01164 1.21242 0.97025 0.98471 0.94096 0.92038 1.21529 1.00365 0.96030 0.96702 1.21565 1.01225 0.95122 0.97542 1.21517 1.00466 0.99154 0.94130 1.21509 1.01145 0.94070 0.97534 1.21608 0.95797 0.95118 0.89381 0.95599 1.60482 1.50798 1.15391 1.04151 1.22475 0.92895 1.00007 0.91856 1.19166 0.80965 0.92261 0.89934 0.96536 1.86490 1.31484 1.26930 1.92289 1.22041 1.11357 1.32813 0.96556 0.92476 1.25907 0.96137 0.93750 1.01868 1.70226 1.26782 1.31730 1.24929 0.85538 0.79272 0.77870 0.78753 1.19726 1.20764 1.18999 0.92062 0.93735 0.92053 0.92217 0.90536 0.90664 0.91432 0.92424 0.91085 0.94063 0.91668 0.84897 0.96544 0.92193 0.80411 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.34 71.98 0.60 -2.64 16 2 C -0.09 -2.12 2.57 -10.79 -0.03 -2.14 16 3 H 0.06 1.48 8.12 -2.39 -0.02 1.47 16 4 C -0.11 -2.01 5.45 30.59 0.17 -1.85 16 5 C -0.12 -2.04 5.65 30.59 0.17 -1.86 16 6 C -0.11 -2.35 5.92 30.60 0.18 -2.17 16 7 C -0.10 -2.82 5.15 30.60 0.16 -2.66 16 8 C 0.09 2.63 2.18 44.92 0.10 2.73 16 9 H 0.03 0.80 7.80 -2.39 -0.02 0.78 16 10 N -0.68 -24.59 5.46 -491.56 -2.68 -27.28 16 11 C 0.06 2.43 5.09 86.30 0.44 2.87 16 12 C 0.23 12.36 3.03 29.85 0.09 12.45 16 13 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 14 O -0.57 -30.79 12.59 -148.98 -1.88 -32.66 16 15 C -0.59 -33.11 8.76 25.60 0.22 -32.89 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.03 1.47 5.40 84.65 0.46 1.92 16 18 N -0.90 -54.76 12.84 21.45 0.28 -54.49 16 19 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.25 7.48 -2.39 -0.02 1.23 16 25 H 0.06 1.42 4.81 -2.39 -0.01 1.40 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.17 6.43 -2.38 -0.02 1.16 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.24 7.45 -2.39 -0.02 1.22 16 33 H 0.06 1.83 6.43 -2.39 -0.02 1.82 16 34 H 0.33 12.24 8.19 -89.69 -0.73 11.51 16 35 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 36 H 0.06 2.52 7.44 -2.38 -0.02 2.51 16 37 H 0.35 17.23 9.04 -74.06 -0.67 16.56 16 38 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -63.34 293.58 -0.06 -63.40 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.36 Total: 31.36 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 2.56 Total: -26.25 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.41 Total: -81.76 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.88 Total: -32.66 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -63.34 -0.06 -63.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308666349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.737 kcal (2) G-P(sol) polarization free energy of solvation -63.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds