Wall clock time and date at job start Mon Mar 30 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.05457 * 2 1 4 4 C 1.54272 * 110.02962 * 238.58912 * 2 1 3 5 5 C 1.54887 * 104.19303 * 217.10069 * 4 2 1 6 6 C 1.54890 * 102.74977 * 37.94271 * 5 4 2 7 7 C 1.53867 * 110.03590 * 121.42304 * 2 1 3 8 8 O 1.42903 * 110.03322 * 238.57198 * 7 2 1 9 9 C 1.52999 * 110.07442 * 359.97213 * 7 2 1 10 10 N 1.46894 * 109.47373 * 179.28472 * 9 7 2 11 11 C 1.46903 * 111.00086 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47078 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46823 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00776 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99850 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99770 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00183 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47116 * 59.99287 * 17 15 13 19 19 H 1.48492 * 109.47292 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46901 * 299.99798 * 17 15 13 21 21 H 1.09004 * 109.46975 * 298.57594 * 1 2 3 22 22 H 1.09001 * 109.47764 * 58.58103 * 1 2 3 23 23 H 1.09005 * 109.47092 * 178.57914 * 1 2 3 24 24 H 1.09002 * 110.48174 * 98.42523 * 4 2 1 25 25 H 1.08993 * 110.60056 * 335.83822 * 4 2 1 26 26 H 1.09002 * 110.76134 * 279.62711 * 5 4 2 27 27 H 1.09003 * 110.75564 * 156.25715 * 5 4 2 28 28 H 1.08998 * 110.48629 * 203.37588 * 6 5 4 29 29 H 1.09003 * 110.48744 * 80.73242 * 6 5 4 30 30 H 0.96700 * 114.00311 * 181.37906 * 8 7 2 31 31 H 1.08995 * 109.47639 * 299.28859 * 9 7 2 32 32 H 1.09008 * 109.46704 * 59.28554 * 9 7 2 33 33 H 1.00899 * 111.00219 * 56.05224 * 10 9 7 34 34 H 1.08999 * 109.47120 * 300.00290 * 11 10 9 35 35 H 1.09000 * 109.47004 * 60.00110 * 11 10 9 36 36 H 1.08996 * 109.46996 * 300.00168 * 12 11 10 37 37 H 1.09000 * 109.46996 * 60.00248 * 12 11 10 38 38 H 0.97005 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 3.3136 -1.5006 -0.7194 6 6 2.8875 -1.9406 0.7033 7 6 2.0571 -0.7536 1.2335 8 8 2.8825 0.1092 2.0186 9 6 0.8870 -1.2669 2.0751 10 7 1.4046 -1.9984 3.2391 11 6 0.3067 -2.5076 4.0717 12 6 0.8839 -3.2624 5.2710 13 6 -0.2424 -3.7852 6.1248 14 1 -1.2674 -3.5984 5.8404 15 6 0.0357 -4.5023 7.2692 16 7 1.2838 -4.7303 7.6153 17 14 -1.3604 -5.1511 8.3272 18 1 -2.2043 -6.0713 7.5233 19 1 -0.8003 -5.8835 9.4912 20 1 -2.1866 -4.0146 8.8078 21 1 -0.3633 0.4916 0.9025 22 1 -0.3635 0.5357 -0.8770 23 1 -0.3633 -1.0274 -0.0255 24 1 2.3296 -0.0534 -2.0255 25 1 1.3152 -1.4657 -1.5990 26 1 4.1710 -0.8289 -0.6754 27 1 3.5325 -2.3677 -1.3426 28 1 3.7638 -2.1037 1.3306 29 1 2.2772 -2.8426 0.6569 30 1 3.2629 -0.3143 2.8003 31 1 0.2856 -0.4235 2.4140 32 1 0.2706 -1.9335 1.4718 33 1 2.0310 -1.4209 3.7797 34 1 -0.2990 -1.6729 4.4245 35 1 -0.3134 -3.1829 3.4821 36 1 1.4894 -4.0970 4.9178 37 1 1.5043 -2.5874 5.8607 38 1 1.4794 -5.2344 8.4206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328190662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:40 Heat of formation + Delta-G solvation = -76.459614 kcal Electronic energy + Delta-G solvation = -16190.910646 eV Core-core repulsion = 13646.025902 eV Total energy + Delta-G solvation = -2544.884744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74694 -35.68927 -34.85331 -32.87942 -31.51581 -29.98596 -27.75817 -25.11757 -24.42266 -22.84057 -20.99164 -20.58097 -18.78520 -16.76143 -16.30776 -15.86970 -15.53246 -14.79433 -14.46238 -14.02997 -13.70175 -13.28787 -12.90675 -12.73472 -12.34842 -12.19075 -11.97404 -11.58999 -11.37214 -11.05814 -10.98908 -10.92788 -10.75036 -10.62740 -10.55959 -10.24192 -10.04310 -9.75392 -9.30792 -9.16194 -8.35993 -7.85718 -6.00644 -4.03366 3.33000 3.37394 3.39721 4.18564 4.38802 4.51786 4.54298 4.88213 4.88844 5.20529 5.33123 5.35362 5.36930 5.42151 5.55671 5.57750 5.73229 5.82162 5.88701 5.93750 5.95476 6.02932 6.19918 6.26884 6.31170 6.36733 6.38623 6.40893 6.95079 7.41482 7.68900 7.74890 7.81654 7.91367 8.05664 8.42041 9.03491 9.60467 11.10748 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050374 B = 0.004807 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.707814 B = 5823.330438 C = 6028.068646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.081 0.919 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.134 4.134 7 C 0.134 3.866 8 O -0.564 6.564 9 C 0.033 3.967 10 N -0.691 5.691 11 C 0.067 3.933 12 C 0.026 3.974 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.377 0.623 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.330 0.670 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 8.123 -15.733 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.171 4.171 7 C 0.094 3.906 8 O -0.371 6.371 9 C -0.096 4.096 10 N -0.322 5.322 11 C -0.061 4.061 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.148 0.852 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.791 7.869 -16.400 18.278 hybrid contribution -0.931 0.003 1.583 1.837 sum 0.860 7.872 -14.817 16.800 Atomic orbital electron populations 1.21988 0.94630 1.02209 1.01777 1.21665 0.95582 1.00126 0.92832 0.90030 1.22440 0.97611 0.98871 0.96694 1.22496 0.97555 0.99655 0.96627 1.22880 1.00154 0.98231 0.95874 1.21924 0.89486 0.88994 0.90239 1.86479 1.67510 1.41437 1.41643 1.22801 0.96364 0.96648 0.93809 1.60630 1.20297 1.40636 1.10678 1.22150 0.91575 0.97272 0.95075 1.19063 0.96302 0.95318 0.90483 1.21134 0.92874 1.34293 1.07893 0.92842 1.24997 0.95499 0.96140 0.97653 1.69961 1.17727 1.40452 1.25107 0.86643 0.82333 0.79058 0.79869 1.20223 1.21241 1.20288 0.92166 0.92705 0.92040 0.91775 0.91376 0.91603 0.91732 0.90985 0.90332 0.77417 0.94957 0.90315 0.85222 0.96646 0.92350 0.95660 0.96834 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 7.89 37.16 0.29 -1.26 16 2 C -0.08 -0.95 3.31 -89.50 -0.30 -1.25 16 3 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 4 C -0.12 -1.18 6.36 -25.07 -0.16 -1.34 16 5 C -0.13 -1.33 6.91 -24.74 -0.17 -1.50 16 6 C -0.13 -1.67 5.78 -25.07 -0.14 -1.82 16 7 C 0.13 1.75 1.12 -89.51 -0.10 1.65 16 8 O -0.56 -7.77 12.85 -35.23 -0.45 -8.23 16 9 C 0.03 0.49 3.54 -3.83 -0.01 0.48 16 10 N -0.69 -11.98 6.15 -113.78 -0.70 -12.68 16 11 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 12 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 13 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.06 0.67 6.76 -51.93 -0.35 0.32 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 29 H 0.08 1.05 7.85 -51.93 -0.41 0.65 16 30 H 0.38 4.54 7.49 45.56 0.34 4.88 16 31 H 0.03 0.49 6.79 -51.93 -0.35 0.14 16 32 H 0.08 1.14 6.68 -51.92 -0.35 0.80 16 33 H 0.33 5.47 7.16 -39.29 -0.28 5.19 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -30.18 297.94 -8.03 -38.21 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.91 Total: 4.47 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -1.17 Total: -16.75 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.04 Total: -38.89 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.45 Total: -8.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.18 -8.03 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328190662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.251 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds