Wall clock time and date at job start Mon Mar 30 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.05457 * 2 1 4 4 C 1.54272 * 110.02962 * 238.58912 * 2 1 3 5 5 C 1.54887 * 104.19303 * 217.10069 * 4 2 1 6 6 C 1.54890 * 102.74977 * 37.94271 * 5 4 2 7 7 C 1.53867 * 110.03590 * 121.42304 * 2 1 3 8 8 O 1.42903 * 110.03322 * 238.57198 * 7 2 1 9 9 C 1.52999 * 110.07442 * 359.97213 * 7 2 1 10 10 N 1.46894 * 109.47373 * 179.28472 * 9 7 2 11 11 C 1.46903 * 111.00086 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47078 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46823 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00776 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99850 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99770 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00183 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47116 * 59.99287 * 17 15 13 19 19 H 1.48492 * 109.47292 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46901 * 299.99798 * 17 15 13 21 21 H 1.09004 * 109.46975 * 298.57594 * 1 2 3 22 22 H 1.09001 * 109.47764 * 58.58103 * 1 2 3 23 23 H 1.09005 * 109.47092 * 178.57914 * 1 2 3 24 24 H 1.09002 * 110.48174 * 98.42523 * 4 2 1 25 25 H 1.08993 * 110.60056 * 335.83822 * 4 2 1 26 26 H 1.09002 * 110.76134 * 279.62711 * 5 4 2 27 27 H 1.09003 * 110.75564 * 156.25715 * 5 4 2 28 28 H 1.08998 * 110.48629 * 203.37588 * 6 5 4 29 29 H 1.09003 * 110.48744 * 80.73242 * 6 5 4 30 30 H 0.96700 * 114.00311 * 181.37906 * 8 7 2 31 31 H 1.08995 * 109.47639 * 299.28859 * 9 7 2 32 32 H 1.09008 * 109.46704 * 59.28554 * 9 7 2 33 33 H 1.00899 * 111.00219 * 56.05224 * 10 9 7 34 34 H 1.08999 * 109.47120 * 300.00290 * 11 10 9 35 35 H 1.09000 * 109.47004 * 60.00110 * 11 10 9 36 36 H 1.08996 * 109.46996 * 300.00168 * 12 11 10 37 37 H 1.09000 * 109.46996 * 60.00248 * 12 11 10 38 38 H 0.97005 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 3.3136 -1.5006 -0.7194 6 6 2.8875 -1.9406 0.7033 7 6 2.0571 -0.7536 1.2335 8 8 2.8825 0.1092 2.0186 9 6 0.8870 -1.2669 2.0751 10 7 1.4046 -1.9984 3.2391 11 6 0.3067 -2.5076 4.0717 12 6 0.8839 -3.2624 5.2710 13 6 -0.2424 -3.7852 6.1248 14 1 -1.2674 -3.5984 5.8404 15 6 0.0357 -4.5023 7.2692 16 7 1.2838 -4.7303 7.6153 17 14 -1.3604 -5.1511 8.3272 18 1 -2.2043 -6.0713 7.5233 19 1 -0.8003 -5.8835 9.4912 20 1 -2.1866 -4.0146 8.8078 21 1 -0.3633 0.4916 0.9025 22 1 -0.3635 0.5357 -0.8770 23 1 -0.3633 -1.0274 -0.0255 24 1 2.3296 -0.0534 -2.0255 25 1 1.3152 -1.4657 -1.5990 26 1 4.1710 -0.8289 -0.6754 27 1 3.5325 -2.3677 -1.3426 28 1 3.7638 -2.1037 1.3306 29 1 2.2772 -2.8426 0.6569 30 1 3.2629 -0.3143 2.8003 31 1 0.2856 -0.4235 2.4140 32 1 0.2706 -1.9335 1.4718 33 1 2.0310 -1.4209 3.7797 34 1 -0.2990 -1.6729 4.4245 35 1 -0.3134 -3.1829 3.4821 36 1 1.4894 -4.0970 4.9178 37 1 1.5043 -2.5874 5.8607 38 1 1.4794 -5.2344 8.4206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328190662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:39 Heat of formation + Delta-G solvation = -97.601933 kcal Electronic energy + Delta-G solvation = -16191.827446 eV Core-core repulsion = 13646.025902 eV Total energy + Delta-G solvation = -2545.801544 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77441 -37.15460 -36.00926 -34.88953 -32.50030 -31.63603 -29.13227 -26.48028 -25.71412 -24.24129 -22.54363 -21.81442 -19.79134 -18.53836 -17.81820 -17.08898 -16.65843 -16.46689 -15.95529 -15.32216 -14.66482 -14.54573 -14.48356 -14.22432 -13.67582 -13.45761 -13.16544 -13.04809 -12.84662 -12.60933 -12.42397 -12.28788 -11.94835 -11.86453 -11.61223 -11.54267 -11.42221 -11.37426 -11.07613 -10.72591 -10.56334 -9.32352 -8.20933 -6.32537 1.40315 1.43350 1.51385 2.40144 3.12621 3.18603 3.23697 3.62962 3.82049 3.87041 4.22971 4.38833 4.41580 4.46128 4.51382 4.59380 4.62794 4.67249 4.81097 4.87791 4.97191 5.03596 5.04758 5.06845 5.21318 5.30341 5.32649 5.39056 5.43636 5.52606 5.65272 5.76288 6.08544 6.23126 6.45419 6.76943 6.84187 7.36806 8.90936 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050374 B = 0.004807 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.707814 B = 5823.330438 C = 6028.068646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.135 4.135 7 C 0.134 3.866 8 O -0.573 6.573 9 C 0.038 3.962 10 N -0.691 5.691 11 C 0.086 3.914 12 C 0.033 3.967 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.382 0.618 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.334 0.666 34 H 0.016 0.984 35 H 0.059 0.941 36 H -0.004 1.004 37 H -0.008 1.008 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 8.412 -16.772 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.173 4.173 7 C 0.093 3.907 8 O -0.381 6.381 9 C -0.091 4.091 10 N -0.323 5.323 11 C -0.043 4.043 12 C -0.005 4.005 13 C -0.586 4.586 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.192 1.192 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.014 0.986 37 H 0.010 0.990 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.735 8.170 -17.456 19.288 hybrid contribution -0.548 -0.067 1.894 1.972 sum 0.187 8.103 -15.563 17.547 Atomic orbital electron populations 1.21971 0.93885 1.02380 1.02195 1.21708 0.96220 0.99721 0.92581 0.90562 1.22445 0.97281 0.99112 0.96296 1.22484 0.97911 1.00218 0.95337 1.22858 0.99564 0.97633 0.97264 1.22023 0.88771 0.89432 0.90443 1.86473 1.67607 1.41973 1.42054 1.22853 0.97208 0.96262 0.92750 1.60522 1.19216 1.41715 1.10836 1.21764 0.92095 0.96796 0.93669 1.18910 0.95328 0.94300 0.91947 1.21582 0.93690 1.34654 1.08650 0.92243 1.25959 0.98261 0.96253 0.99111 1.70096 1.20053 1.41160 1.25759 0.85484 0.78896 0.78671 0.77891 1.19151 1.20744 1.19201 0.93176 0.90844 0.92029 0.90138 0.90531 0.91625 0.90489 0.91882 0.91321 0.76877 0.95165 0.89907 0.84768 0.96596 0.92295 0.98566 0.98997 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 7.89 71.98 0.57 -2.22 16 2 C -0.08 -1.75 3.31 -10.07 -0.03 -1.78 16 3 H 0.08 1.71 7.95 -2.39 -0.02 1.69 16 4 C -0.11 -1.97 6.36 31.67 0.20 -1.77 16 5 C -0.12 -2.35 6.91 31.88 0.22 -2.13 16 6 C -0.14 -3.28 5.78 31.67 0.18 -3.09 16 7 C 0.13 3.36 1.12 -10.07 -0.01 3.35 16 8 O -0.57 -15.45 12.85 -148.98 -1.91 -17.37 16 9 C 0.04 1.10 3.54 86.30 0.31 1.40 16 10 N -0.69 -23.99 6.15 -513.88 -3.16 -27.15 16 11 C 0.09 3.61 5.62 86.30 0.49 4.10 16 12 C 0.03 1.74 5.23 29.85 0.16 1.90 16 13 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 0.14 5.46 84.66 0.46 0.60 16 16 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 17 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H 0.05 1.04 6.76 -2.38 -0.02 1.03 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.16 6.70 -2.38 -0.02 1.15 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.22 7.84 -2.39 -0.02 1.20 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16 29 H 0.07 1.79 7.85 -2.39 -0.02 1.77 16 30 H 0.38 9.16 7.49 -74.06 -0.55 8.61 16 31 H 0.03 0.89 6.79 -2.39 -0.02 0.88 16 32 H 0.08 2.31 6.68 -2.38 -0.02 2.30 16 33 H 0.33 11.19 7.16 -89.69 -0.64 10.55 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 38 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -63.95 297.94 -0.16 -64.11 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.16 Total: 21.56 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 2.77 Total: -30.83 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.88 Total: -83.78 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.91 Total: -17.37 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.95 -0.16 -64.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328190662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.487 kcal (2) G-P(sol) polarization free energy of solvation -63.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds