Wall clock time and date at job start Mon Mar 30 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46613 * 2 1 4 4 C 1.50696 * 109.47067 * 240.00247 * 2 1 3 5 5 H 1.07997 * 119.99774 * 274.99324 * 4 2 1 6 6 C 1.37875 * 119.99987 * 94.99892 * 4 2 1 7 7 N 1.31518 * 120.00153 * 184.91319 * 6 4 2 8 8 Si 1.86805 * 120.00025 * 4.90870 * 6 4 2 9 9 H 1.48497 * 109.46937 * 84.83405 * 8 6 4 10 10 H 1.48504 * 109.46998 * 204.83535 * 8 6 4 11 11 H 1.48499 * 109.47163 * 324.83474 * 8 6 4 12 12 N 1.46898 * 109.46930 * 119.99944 * 2 1 3 13 13 C 1.46901 * 111.00192 * 274.99952 * 12 2 1 14 14 C 1.52998 * 109.46968 * 180.02562 * 13 12 2 15 15 O 1.42891 * 110.02119 * 301.39526 * 14 13 12 16 16 C 1.54270 * 110.07067 * 62.81558 * 14 13 12 17 17 C 1.54892 * 104.19440 * 142.91474 * 16 14 13 18 18 C 1.54964 * 102.77721 * 322.07960 * 17 16 14 19 19 C 1.53882 * 110.03084 * 180.02562 * 14 13 12 20 20 H 1.08999 * 110.02922 * 121.33300 * 19 14 13 21 21 C 1.53006 * 110.02946 * 359.95787 * 19 14 13 22 22 H 1.09000 * 109.47546 * 295.03818 * 1 2 3 23 23 H 1.08997 * 109.47421 * 55.04388 * 1 2 3 24 24 H 1.09004 * 109.47227 * 175.04310 * 1 2 3 25 25 H 0.97002 * 120.00186 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00550 * 38.95658 * 12 2 1 27 27 H 1.09000 * 109.46859 * 60.00317 * 13 12 2 28 28 H 1.08996 * 109.47653 * 300.00615 * 13 12 2 29 29 H 0.96696 * 114.00309 * 58.60962 * 15 14 13 30 30 H 1.08996 * 110.48324 * 261.58926 * 16 14 13 31 31 H 1.08994 * 110.48511 * 24.23583 * 16 14 13 32 32 H 1.08992 * 110.75679 * 80.37127 * 17 16 14 33 33 H 1.09002 * 110.75224 * 203.55666 * 17 16 14 34 34 H 1.09003 * 110.48082 * 279.23695 * 18 17 16 35 35 H 1.09000 * 110.52679 * 156.57070 * 18 17 16 36 36 H 1.09001 * 109.47214 * 60.69012 * 21 19 14 37 37 H 1.09000 * 109.47026 * 300.68705 * 21 19 14 38 38 H 1.08997 * 109.46416 * 180.68829 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2290 6 6 2.3602 0.0122 -2.3580 7 7 2.7059 -0.6130 -3.4622 8 14 2.3133 1.8792 -2.3174 9 1 3.5987 2.3951 -1.7821 10 1 2.1054 2.3992 -3.6928 11 1 1.1983 2.3275 -1.4450 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5329 3.5742 15 8 1.7355 -1.6358 3.8653 16 6 4.0329 -1.0356 3.3233 17 6 4.7366 -0.8737 4.6936 18 6 4.1440 0.4544 5.2284 19 6 2.6665 0.4142 4.7849 20 1 2.0436 0.0327 5.5940 21 6 2.2016 1.8152 4.3820 22 1 -0.3634 0.4349 0.9311 23 1 -0.3634 0.5888 -0.8422 24 1 -0.3634 -1.0239 -0.0888 25 1 2.9362 -0.1046 -4.2556 26 1 1.4496 -1.4979 1.4101 27 1 1.0870 0.6163 2.5525 28 1 2.7587 1.0462 2.1183 29 1 1.6493 -2.2696 3.1402 30 1 4.0233 -2.0827 3.0207 31 1 4.5246 -0.4236 2.5672 32 1 4.4868 -1.7021 5.3564 33 1 5.8163 -0.7949 4.5663 34 1 4.6538 1.3074 4.7805 35 1 4.2148 0.4942 6.3154 36 1 1.1693 1.7697 4.0350 37 1 2.8377 2.1928 3.5816 38 1 2.2666 2.4809 5.2426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328201081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:57 Heat of formation + Delta-G solvation = -66.954473 kcal Electronic energy + Delta-G solvation = -16821.545902 eV Core-core repulsion = 14277.073332 eV Total energy + Delta-G solvation = -2544.472571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60004 -35.90023 -34.80785 -32.35709 -31.37195 -29.96595 -27.29703 -25.25633 -24.81590 -23.27990 -20.85850 -20.03975 -18.71638 -17.20574 -16.29572 -15.72726 -15.22992 -14.56363 -14.21613 -13.72694 -13.58473 -13.14383 -12.85914 -12.48622 -12.30197 -12.08764 -12.02731 -11.63995 -11.25158 -11.11212 -11.02846 -10.85307 -10.75548 -10.62928 -10.45865 -10.29677 -9.97426 -9.74978 -9.51849 -9.11480 -8.52624 -7.39918 -6.06352 -4.03495 3.27088 3.34931 3.35362 4.33062 4.40954 4.64622 4.68282 5.02627 5.04404 5.31833 5.42464 5.47244 5.50401 5.56371 5.70359 5.76732 5.88053 5.94820 6.02247 6.09781 6.10275 6.15470 6.25275 6.31998 6.40204 6.43929 6.52834 6.55614 6.60227 6.80217 7.11601 7.68632 7.90009 7.95413 8.30309 8.65190 9.01192 9.56498 11.07278 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.007353 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.617499 B = 3807.207406 C = 3850.767568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.181 3.819 3 H 0.035 0.965 4 C -0.491 4.491 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.031 3.969 14 C 0.135 3.865 15 O -0.565 6.565 16 C -0.132 4.132 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.083 4.083 20 H 0.080 0.920 21 C -0.149 4.149 22 H 0.020 0.980 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.322 0.678 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.376 0.624 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 2.902 15.592 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.073 3.927 3 H 0.053 0.947 4 C -0.530 4.530 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.304 5.304 13 C -0.099 4.099 14 C 0.094 3.906 15 O -0.372 6.372 16 C -0.170 4.170 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.102 4.102 20 H 0.098 0.902 21 C -0.206 4.206 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.225 0.775 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.340 3.334 15.790 16.194 hybrid contribution -0.941 0.864 -0.528 1.382 sum 0.399 4.198 15.262 15.834 Atomic orbital electron populations 1.22639 1.00985 1.00784 0.98623 1.19634 0.89388 0.94609 0.89044 0.94655 1.20855 1.42655 0.95673 0.93798 0.90596 1.24975 0.94802 0.97980 0.95423 1.69892 1.46715 1.35607 1.01676 0.86915 0.78871 0.86893 0.77043 1.20178 1.21521 1.19398 1.60969 1.57616 1.08864 1.02959 1.22833 0.99207 0.96551 0.91286 1.21921 0.89301 0.86184 0.93146 1.86446 1.69095 1.37045 1.44640 1.22860 0.95176 1.02263 0.96697 1.22506 0.99354 0.97202 0.97277 1.22455 0.94789 0.98210 1.00129 1.21675 0.96921 0.94580 0.97033 0.90186 1.21987 1.01778 0.95606 1.01221 0.96127 0.93264 0.93238 0.92686 0.86093 0.95419 0.90720 0.77484 0.91012 0.90189 0.91750 0.91824 0.91421 0.91885 0.92227 0.92012 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.16 37.16 0.34 -3.25 16 2 C 0.18 4.19 2.23 -68.87 -0.15 4.04 16 3 H 0.04 0.85 4.95 -51.93 -0.26 0.59 16 4 C -0.49 -13.63 9.19 -34.44 -0.32 -13.94 16 5 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 8 Si 0.87 21.50 26.99 -169.99 -4.59 16.92 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.32 6.82 56.52 0.39 -5.94 16 12 N -0.67 -13.25 5.90 -107.96 -0.64 -13.88 16 13 C 0.03 0.53 3.34 -3.82 -0.01 0.51 16 14 C 0.14 1.99 1.12 -89.50 -0.10 1.89 16 15 O -0.57 -8.49 12.85 -35.23 -0.45 -8.95 16 16 C -0.13 -1.91 5.80 -25.07 -0.15 -2.05 16 17 C -0.13 -1.52 6.91 -24.70 -0.17 -1.69 16 18 C -0.12 -1.35 6.37 -25.01 -0.16 -1.51 16 19 C -0.08 -1.07 3.31 -89.47 -0.30 -1.37 16 20 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 21 C -0.15 -1.80 7.89 37.16 0.29 -1.51 16 22 H 0.02 0.38 7.35 -51.93 -0.38 0.00 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.32 5.86 6.86 -39.29 -0.27 5.59 16 27 H 0.03 0.48 5.98 -51.93 -0.31 0.17 16 28 H 0.07 1.31 6.61 -51.93 -0.34 0.96 16 29 H 0.38 5.01 7.44 45.56 0.34 5.35 16 30 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.08 1.27 7.84 -51.93 -0.41 0.86 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.74 7.85 -51.93 -0.41 0.34 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.76 6.78 -51.93 -0.35 0.40 16 37 H 0.06 0.77 6.68 -51.93 -0.35 0.42 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -29.82 291.12 -7.02 -36.84 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.68 Total: 8.31 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.82 Total: -16.97 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.14 Total: -40.52 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.45 Total: -8.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.82 -7.02 -36.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328201081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.118 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds