Wall clock time and date at job start Mon Mar 30 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46613 * 2 1 4 4 C 1.50696 * 109.47067 * 240.00247 * 2 1 3 5 5 H 1.07997 * 119.99774 * 274.99324 * 4 2 1 6 6 C 1.37875 * 119.99987 * 94.99892 * 4 2 1 7 7 N 1.31518 * 120.00153 * 184.91319 * 6 4 2 8 8 Si 1.86805 * 120.00025 * 4.90870 * 6 4 2 9 9 H 1.48497 * 109.46937 * 84.83405 * 8 6 4 10 10 H 1.48504 * 109.46998 * 204.83535 * 8 6 4 11 11 H 1.48499 * 109.47163 * 324.83474 * 8 6 4 12 12 N 1.46898 * 109.46930 * 119.99944 * 2 1 3 13 13 C 1.46901 * 111.00192 * 274.99952 * 12 2 1 14 14 C 1.52998 * 109.46968 * 180.02562 * 13 12 2 15 15 O 1.42891 * 110.02119 * 301.39526 * 14 13 12 16 16 C 1.54270 * 110.07067 * 62.81558 * 14 13 12 17 17 C 1.54892 * 104.19440 * 142.91474 * 16 14 13 18 18 C 1.54964 * 102.77721 * 322.07960 * 17 16 14 19 19 C 1.53882 * 110.03084 * 180.02562 * 14 13 12 20 20 H 1.08999 * 110.02922 * 121.33300 * 19 14 13 21 21 C 1.53006 * 110.02946 * 359.95787 * 19 14 13 22 22 H 1.09000 * 109.47546 * 295.03818 * 1 2 3 23 23 H 1.08997 * 109.47421 * 55.04388 * 1 2 3 24 24 H 1.09004 * 109.47227 * 175.04310 * 1 2 3 25 25 H 0.97002 * 120.00186 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00550 * 38.95658 * 12 2 1 27 27 H 1.09000 * 109.46859 * 60.00317 * 13 12 2 28 28 H 1.08996 * 109.47653 * 300.00615 * 13 12 2 29 29 H 0.96696 * 114.00309 * 58.60962 * 15 14 13 30 30 H 1.08996 * 110.48324 * 261.58926 * 16 14 13 31 31 H 1.08994 * 110.48511 * 24.23583 * 16 14 13 32 32 H 1.08992 * 110.75679 * 80.37127 * 17 16 14 33 33 H 1.09002 * 110.75224 * 203.55666 * 17 16 14 34 34 H 1.09003 * 110.48082 * 279.23695 * 18 17 16 35 35 H 1.09000 * 110.52679 * 156.57070 * 18 17 16 36 36 H 1.09001 * 109.47214 * 60.69012 * 21 19 14 37 37 H 1.09000 * 109.47026 * 300.68705 * 21 19 14 38 38 H 1.08997 * 109.46416 * 180.68829 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2290 6 6 2.3602 0.0122 -2.3580 7 7 2.7059 -0.6130 -3.4622 8 14 2.3133 1.8792 -2.3174 9 1 3.5987 2.3951 -1.7821 10 1 2.1054 2.3992 -3.6928 11 1 1.1983 2.3275 -1.4450 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5329 3.5742 15 8 1.7355 -1.6358 3.8653 16 6 4.0329 -1.0356 3.3233 17 6 4.7366 -0.8737 4.6936 18 6 4.1440 0.4544 5.2284 19 6 2.6665 0.4142 4.7849 20 1 2.0436 0.0327 5.5940 21 6 2.2016 1.8152 4.3820 22 1 -0.3634 0.4349 0.9311 23 1 -0.3634 0.5888 -0.8422 24 1 -0.3634 -1.0239 -0.0888 25 1 2.9362 -0.1046 -4.2556 26 1 1.4496 -1.4979 1.4101 27 1 1.0870 0.6163 2.5525 28 1 2.7587 1.0462 2.1183 29 1 1.6493 -2.2696 3.1402 30 1 4.0233 -2.0827 3.0207 31 1 4.5246 -0.4236 2.5672 32 1 4.4868 -1.7021 5.3564 33 1 5.8163 -0.7949 4.5663 34 1 4.6538 1.3074 4.7805 35 1 4.2148 0.4942 6.3154 36 1 1.1693 1.7697 4.0350 37 1 2.8377 2.1928 3.5816 38 1 2.2666 2.4809 5.2426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328201081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:56 Heat of formation + Delta-G solvation = -88.758235 kcal Electronic energy + Delta-G solvation = -16822.491384 eV Core-core repulsion = 14277.073332 eV Total energy + Delta-G solvation = -2545.418053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75641 -37.52166 -35.98700 -34.38116 -32.47535 -31.51114 -28.61189 -27.25805 -25.85916 -24.61240 -22.06765 -21.70610 -19.89922 -19.08554 -17.66028 -17.05695 -16.47777 -16.22359 -15.75395 -15.14576 -14.72548 -14.60831 -14.35686 -14.18396 -13.71307 -13.43515 -13.26564 -12.97625 -12.93054 -12.63943 -12.39168 -12.27019 -12.08058 -11.83991 -11.78646 -11.56746 -11.44258 -11.28598 -11.07326 -10.76095 -10.61182 -8.99955 -8.26287 -6.27942 1.33538 1.34191 1.43905 2.34469 3.02763 3.24498 3.44413 3.65977 3.89612 3.93379 4.26720 4.38401 4.44952 4.50015 4.53145 4.58713 4.65367 4.69268 4.79735 4.84851 4.87908 4.98249 5.04634 5.06066 5.09241 5.22354 5.31963 5.36475 5.40029 5.42239 5.53890 5.67926 6.04202 6.63368 6.70460 6.77259 6.82765 7.35984 8.91048 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.007353 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.617499 B = 3807.207406 C = 3850.767568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.034 0.966 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.940 3.060 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.248 1.248 12 N -0.682 5.682 13 C 0.037 3.963 14 C 0.136 3.864 15 O -0.571 6.571 16 C -0.135 4.135 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.083 4.083 20 H 0.079 0.921 21 C -0.148 4.148 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.264 0.736 26 H 0.330 0.670 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.381 0.619 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 4.606 17.804 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.076 3.924 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.052 0.948 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.764 3.236 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.172 1.172 12 N -0.313 5.313 13 C -0.093 4.093 14 C 0.096 3.904 15 O -0.379 6.379 16 C -0.173 4.173 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.102 4.102 20 H 0.098 0.902 21 C -0.205 4.205 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.079 5.029 18.033 18.752 hybrid contribution -0.860 0.208 -1.185 1.478 sum 0.219 5.236 16.849 17.645 Atomic orbital electron populations 1.22491 0.99109 1.00998 0.99748 1.19449 0.90624 0.93868 0.88485 0.94889 1.21135 1.42092 0.94085 0.95975 0.94807 1.25833 0.94713 1.03247 0.94929 1.70049 1.48770 1.37709 1.02610 0.85863 0.79722 0.80550 0.77436 1.19493 1.21345 1.17169 1.60707 1.57819 1.09582 1.03207 1.22856 0.99395 0.96091 0.90932 1.21982 0.89078 0.86283 0.93106 1.86444 1.69166 1.37222 1.45022 1.22833 0.95415 1.01228 0.97823 1.22490 0.99843 0.97919 0.95625 1.22463 0.93457 0.97799 1.01405 1.21718 0.98120 0.94423 0.95911 0.90235 1.21973 1.01051 0.95470 1.01970 0.93345 0.93999 0.93269 0.92664 0.85207 0.95043 0.91198 0.76933 0.91978 0.91992 0.91386 0.90724 0.90883 0.89876 0.92995 0.92538 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.61 9.16 71.98 0.66 -5.95 16 2 C 0.18 8.38 2.23 44.17 0.10 8.48 16 3 H 0.03 1.52 4.95 -2.39 -0.01 1.51 16 4 C -0.49 -27.93 9.19 25.60 0.24 -27.69 16 5 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 6 C 0.01 0.55 5.47 84.65 0.46 1.02 16 7 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 8 Si 0.94 44.10 26.99 68.60 1.85 45.96 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.25 -10.70 6.82 99.48 0.68 -10.02 16 12 N -0.68 -26.37 5.90 -495.47 -2.92 -29.29 16 13 C 0.04 1.18 3.34 86.30 0.29 1.47 16 14 C 0.14 3.78 1.12 -10.07 -0.01 3.77 16 15 O -0.57 -16.26 12.85 -148.98 -1.91 -18.18 16 16 C -0.14 -3.76 5.80 31.67 0.18 -3.58 16 17 C -0.12 -2.65 6.91 31.91 0.22 -2.43 16 18 C -0.11 -2.24 6.37 31.71 0.20 -2.04 16 19 C -0.08 -1.92 3.31 -10.05 -0.03 -1.95 16 20 H 0.08 1.88 7.95 -2.39 -0.02 1.86 16 21 C -0.15 -3.15 7.89 71.98 0.57 -2.58 16 22 H 0.05 1.67 7.35 -2.39 -0.02 1.66 16 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.33 11.83 6.86 -89.70 -0.62 11.22 16 27 H 0.03 1.00 5.98 -2.39 -0.01 0.99 16 28 H 0.07 2.33 6.61 -2.39 -0.02 2.32 16 29 H 0.38 9.80 7.44 -74.06 -0.55 9.25 16 30 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 31 H 0.06 1.94 7.84 -2.39 -0.02 1.92 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.37 7.85 -2.39 -0.02 1.36 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.18 6.78 -2.39 -0.02 1.16 16 37 H 0.06 1.26 6.68 -2.39 -0.02 1.25 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -64.21 291.12 0.03 -64.18 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.15 Total: 27.99 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 2.87 Total: -31.48 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.62 Total: -88.46 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.91 Total: -18.18 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.85 Total: 45.96 kcal Total: -64.21 0.03 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328201081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.581 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds