Wall clock time and date at job start Mon Mar 30 2020 05:02:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.46613 * 2 1
4 4 C 1.50696 * 109.47067 * 240.00247 * 2 1 3
5 5 H 1.07997 * 119.99774 * 274.99324 * 4 2 1
6 6 C 1.37875 * 119.99987 * 94.99892 * 4 2 1
7 7 N 1.31518 * 120.00153 * 184.91319 * 6 4 2
8 8 Si 1.86805 * 120.00025 * 4.90870 * 6 4 2
9 9 H 1.48497 * 109.46937 * 84.83405 * 8 6 4
10 10 H 1.48504 * 109.46998 * 204.83535 * 8 6 4
11 11 H 1.48499 * 109.47163 * 324.83474 * 8 6 4
12 12 N 1.46898 * 109.46930 * 119.99944 * 2 1 3
13 13 C 1.46901 * 111.00192 * 274.99952 * 12 2 1
14 14 C 1.52998 * 109.46968 * 180.02562 * 13 12 2
15 15 O 1.42891 * 110.02119 * 301.39526 * 14 13 12
16 16 C 1.54270 * 110.07067 * 62.81558 * 14 13 12
17 17 C 1.54892 * 104.19440 * 142.91474 * 16 14 13
18 18 C 1.54964 * 102.77721 * 322.07960 * 17 16 14
19 19 C 1.53882 * 110.03084 * 180.02562 * 14 13 12
20 20 H 1.08999 * 110.02922 * 121.33300 * 19 14 13
21 21 C 1.53006 * 110.02946 * 359.95787 * 19 14 13
22 22 H 1.09000 * 109.47546 * 295.03818 * 1 2 3
23 23 H 1.08997 * 109.47421 * 55.04388 * 1 2 3
24 24 H 1.09004 * 109.47227 * 175.04310 * 1 2 3
25 25 H 0.97002 * 120.00186 * 179.97438 * 7 6 4
26 26 H 1.00896 * 111.00550 * 38.95658 * 12 2 1
27 27 H 1.09000 * 109.46859 * 60.00317 * 13 12 2
28 28 H 1.08996 * 109.47653 * 300.00615 * 13 12 2
29 29 H 0.96696 * 114.00309 * 58.60962 * 15 14 13
30 30 H 1.08996 * 110.48324 * 261.58926 * 16 14 13
31 31 H 1.08994 * 110.48511 * 24.23583 * 16 14 13
32 32 H 1.08992 * 110.75679 * 80.37127 * 17 16 14
33 33 H 1.09002 * 110.75224 * 203.55666 * 17 16 14
34 34 H 1.09003 * 110.48082 * 279.23695 * 18 17 16
35 35 H 1.09000 * 110.52679 * 156.57070 * 18 17 16
36 36 H 1.09001 * 109.47214 * 60.69012 * 21 19 14
37 37 H 1.09000 * 109.47026 * 300.68705 * 21 19 14
38 38 H 1.08997 * 109.46416 * 180.68829 * 21 19 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.1355 -1.7854 -1.2290
6 6 2.3602 0.0122 -2.3580
7 7 2.7059 -0.6130 -3.4622
8 14 2.3133 1.8792 -2.3174
9 1 3.5987 2.3951 -1.7821
10 1 2.1054 2.3992 -3.6928
11 1 1.1983 2.3275 -1.4450
12 7 2.0196 -0.6925 1.1994
13 6 2.0824 0.2226 2.3469
14 6 2.5961 -0.5329 3.5742
15 8 1.7355 -1.6358 3.8653
16 6 4.0329 -1.0356 3.3233
17 6 4.7366 -0.8737 4.6936
18 6 4.1440 0.4544 5.2284
19 6 2.6665 0.4142 4.7849
20 1 2.0436 0.0327 5.5940
21 6 2.2016 1.8152 4.3820
22 1 -0.3634 0.4349 0.9311
23 1 -0.3634 0.5888 -0.8422
24 1 -0.3634 -1.0239 -0.0888
25 1 2.9362 -0.1046 -4.2556
26 1 1.4496 -1.4979 1.4101
27 1 1.0870 0.6163 2.5525
28 1 2.7587 1.0462 2.1183
29 1 1.6493 -2.2696 3.1402
30 1 4.0233 -2.0827 3.0207
31 1 4.5246 -0.4236 2.5672
32 1 4.4868 -1.7021 5.3564
33 1 5.8163 -0.7949 4.5663
34 1 4.6538 1.3074 4.7805
35 1 4.2148 0.4942 6.3154
36 1 1.1693 1.7697 4.0350
37 1 2.8377 2.1928 3.5816
38 1 2.2666 2.4809 5.2426
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000328201081.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:02:56
Heat of formation + Delta-G solvation = -88.758235 kcal
Electronic energy + Delta-G solvation = -16822.491384 eV
Core-core repulsion = 14277.073332 eV
Total energy + Delta-G solvation = -2545.418053 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.75641 -37.52166 -35.98700 -34.38116 -32.47535 -31.51114 -28.61189 -27.25805
-25.85916 -24.61240 -22.06765 -21.70610 -19.89922 -19.08554 -17.66028 -17.05695
-16.47777 -16.22359 -15.75395 -15.14576 -14.72548 -14.60831 -14.35686 -14.18396
-13.71307 -13.43515 -13.26564 -12.97625 -12.93054 -12.63943 -12.39168 -12.27019
-12.08058 -11.83991 -11.78646 -11.56746 -11.44258 -11.28598 -11.07326 -10.76095
-10.61182 -8.99955 -8.26287 -6.27942 1.33538 1.34191 1.43905 2.34469
3.02763 3.24498 3.44413 3.65977 3.89612 3.93379 4.26720 4.38401
4.44952 4.50015 4.53145 4.58713 4.65367 4.69268 4.79735 4.84851
4.87908 4.98249 5.04634 5.06066 5.09241 5.22354 5.31963 5.36475
5.40029 5.42239 5.53890 5.67926 6.04202 6.63368 6.70460 6.77259
6.82765 7.35984 8.91048
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033104 B = 0.007353 C = 0.007270
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.617499 B = 3807.207406 C = 3850.767568
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.185 3.815
3 H 0.033 0.967
4 C -0.494 4.494
5 H 0.034 0.966
6 C 0.010 3.990
7 N -0.950 5.950
8 Si 0.940 3.060
9 H -0.270 1.270
10 H -0.287 1.287
11 H -0.248 1.248
12 N -0.682 5.682
13 C 0.037 3.963
14 C 0.136 3.864
15 O -0.571 6.571
16 C -0.135 4.135
17 C -0.121 4.121
18 C -0.114 4.114
19 C -0.083 4.083
20 H 0.079 0.921
21 C -0.148 4.148
22 H 0.048 0.952
23 H 0.041 0.959
24 H 0.048 0.952
25 H 0.264 0.736
26 H 0.330 0.670
27 H 0.032 0.968
28 H 0.070 0.930
29 H 0.381 0.619
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.067 0.933
33 H 0.074 0.926
34 H 0.072 0.928
35 H 0.083 0.917
36 H 0.051 0.949
37 H 0.056 0.944
38 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.420 4.606 17.804 18.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.076 3.924
3 H 0.051 0.949
4 C -0.533 4.533
5 H 0.052 0.948
6 C -0.187 4.187
7 N -0.591 5.591
8 Si 0.764 3.236
9 H -0.195 1.195
10 H -0.213 1.213
11 H -0.172 1.172
12 N -0.313 5.313
13 C -0.093 4.093
14 C 0.096 3.904
15 O -0.379 6.379
16 C -0.173 4.173
17 C -0.159 4.159
18 C -0.151 4.151
19 C -0.102 4.102
20 H 0.098 0.902
21 C -0.205 4.205
22 H 0.067 0.933
23 H 0.060 0.940
24 H 0.067 0.933
25 H 0.073 0.927
26 H 0.148 0.852
27 H 0.050 0.950
28 H 0.088 0.912
29 H 0.231 0.769
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.093 0.907
34 H 0.091 0.909
35 H 0.101 0.899
36 H 0.070 0.930
37 H 0.075 0.925
38 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 1.079 5.029 18.033 18.752
hybrid contribution -0.860 0.208 -1.185 1.478
sum 0.219 5.236 16.849 17.645
Atomic orbital electron populations
1.22491 0.99109 1.00998 0.99748 1.19449 0.90624 0.93868 0.88485
0.94889 1.21135 1.42092 0.94085 0.95975 0.94807 1.25833 0.94713
1.03247 0.94929 1.70049 1.48770 1.37709 1.02610 0.85863 0.79722
0.80550 0.77436 1.19493 1.21345 1.17169 1.60707 1.57819 1.09582
1.03207 1.22856 0.99395 0.96091 0.90932 1.21982 0.89078 0.86283
0.93106 1.86444 1.69166 1.37222 1.45022 1.22833 0.95415 1.01228
0.97823 1.22490 0.99843 0.97919 0.95625 1.22463 0.93457 0.97799
1.01405 1.21718 0.98120 0.94423 0.95911 0.90235 1.21973 1.01051
0.95470 1.01970 0.93345 0.93999 0.93269 0.92664 0.85207 0.95043
0.91198 0.76933 0.91978 0.91992 0.91386 0.90724 0.90883 0.89876
0.92995 0.92538 0.90713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -6.61 9.16 71.98 0.66 -5.95 16
2 C 0.18 8.38 2.23 44.17 0.10 8.48 16
3 H 0.03 1.52 4.95 -2.39 -0.01 1.51 16
4 C -0.49 -27.93 9.19 25.60 0.24 -27.69 16
5 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16
6 C 0.01 0.55 5.47 84.65 0.46 1.02 16
7 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16
8 Si 0.94 44.10 26.99 68.60 1.85 45.96 16
9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
10 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16
11 H -0.25 -10.70 6.82 99.48 0.68 -10.02 16
12 N -0.68 -26.37 5.90 -495.47 -2.92 -29.29 16
13 C 0.04 1.18 3.34 86.30 0.29 1.47 16
14 C 0.14 3.78 1.12 -10.07 -0.01 3.77 16
15 O -0.57 -16.26 12.85 -148.98 -1.91 -18.18 16
16 C -0.14 -3.76 5.80 31.67 0.18 -3.58 16
17 C -0.12 -2.65 6.91 31.91 0.22 -2.43 16
18 C -0.11 -2.24 6.37 31.71 0.20 -2.04 16
19 C -0.08 -1.92 3.31 -10.05 -0.03 -1.95 16
20 H 0.08 1.88 7.95 -2.39 -0.02 1.86 16
21 C -0.15 -3.15 7.89 71.98 0.57 -2.58 16
22 H 0.05 1.67 7.35 -2.39 -0.02 1.66 16
23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
24 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16
25 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16
26 H 0.33 11.83 6.86 -89.70 -0.62 11.22 16
27 H 0.03 1.00 5.98 -2.39 -0.01 0.99 16
28 H 0.07 2.33 6.61 -2.39 -0.02 2.32 16
29 H 0.38 9.80 7.44 -74.06 -0.55 9.25 16
30 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16
31 H 0.06 1.94 7.84 -2.39 -0.02 1.92 16
32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
34 H 0.07 1.37 7.85 -2.39 -0.02 1.36 16
35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
36 H 0.05 1.18 6.78 -2.39 -0.02 1.16 16
37 H 0.06 1.26 6.68 -2.39 -0.02 1.25 16
38 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16
Total: -1.00 -64.21 291.12 0.03 -64.18
By element:
Atomic # 1 Polarization: 28.14 SS G_CDS: -0.15 Total: 27.99 kcal
Atomic # 6 Polarization: -34.35 SS G_CDS: 2.87 Total: -31.48 kcal
Atomic # 7 Polarization: -85.84 SS G_CDS: -2.62 Total: -88.46 kcal
Atomic # 8 Polarization: -16.26 SS G_CDS: -1.91 Total: -18.18 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 1.85 Total: 45.96 kcal
Total: -64.21 0.03 -64.18 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000328201081.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.581 kcal
(2) G-P(sol) polarization free energy of solvation -64.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.758 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds