Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 H 1.09005 * 109.47047 * 304.45649 * 3 2 1 5 5 C 1.50697 * 109.47177 * 184.45793 * 3 2 1 6 6 H 1.07997 * 120.00078 * 239.99825 * 5 3 2 7 7 C 1.37888 * 120.00274 * 59.99592 * 5 3 2 8 8 N 1.31507 * 119.99521 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46971 * 60.00157 * 9 7 5 11 11 H 1.48494 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46971 * 300.00551 * 9 7 5 13 13 N 1.46890 * 109.47121 * 64.45649 * 3 2 1 14 14 C 1.46909 * 110.99830 * 207.19064 * 13 3 2 15 15 H 1.08994 * 110.43399 * 35.10670 * 14 13 3 16 16 C 1.54808 * 110.48574 * 272.55617 * 14 13 3 17 17 C 1.54993 * 102.12365 * 220.29232 * 16 14 13 18 18 O 1.44470 * 103.44806 * 37.02418 * 17 16 14 19 19 C 1.43750 * 106.98390 * 319.94485 * 18 17 16 20 20 C 1.52992 * 109.87666 * 267.08931 * 19 18 17 21 21 C 1.53001 * 109.87908 * 145.93761 * 19 18 17 22 22 H 1.09004 * 109.46741 * 54.80744 * 1 2 3 23 23 H 1.08995 * 109.47271 * 174.81148 * 1 2 3 24 24 H 1.08998 * 109.46677 * 294.81208 * 1 2 3 25 25 H 1.09000 * 109.47099 * 239.99824 * 2 1 3 26 26 H 1.08999 * 109.47443 * 120.00452 * 2 1 3 27 27 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00162 * 83.23873 * 13 3 2 29 29 H 1.08997 * 110.90849 * 338.51189 * 16 14 13 30 30 H 1.09003 * 110.90234 * 102.08101 * 16 14 13 31 31 H 1.09004 * 110.61660 * 155.54392 * 17 16 14 32 32 H 1.09004 * 110.62254 * 278.53943 * 17 16 14 33 33 H 1.09002 * 109.47110 * 177.83455 * 20 19 18 34 34 H 1.09007 * 109.47370 * 297.82755 * 20 19 18 35 35 H 1.08999 * 109.47461 * 57.83120 * 20 19 18 36 36 H 1.09004 * 109.46827 * 302.17145 * 21 19 18 37 37 H 1.09002 * 109.46937 * 62.16692 * 21 19 18 38 38 H 1.08993 * 109.47422 * 182.17001 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6130 1.9789 -0.8474 5 6 3.5430 1.4439 -0.1104 6 1 4.1414 1.8909 0.6696 7 6 4.1543 0.8744 -1.2074 8 7 3.4256 0.3305 -2.1575 9 14 6.0173 0.8755 -1.3439 10 1 6.5986 0.1444 -0.1895 11 1 6.4214 0.2082 -2.6074 12 1 6.5128 2.2754 -1.3435 13 7 1.6403 2.1032 1.2495 14 6 1.5127 3.5544 1.0602 15 1 1.1301 3.7760 0.0639 16 6 2.8762 4.2521 1.2848 17 6 2.4647 5.5286 2.0616 18 8 1.3929 5.0714 2.9156 19 6 0.5948 4.1631 2.1380 20 6 -0.5566 4.9204 1.4737 21 6 0.0425 3.0553 3.0372 22 1 -0.3633 0.5923 -0.8399 23 1 -0.3633 -1.0234 -0.0929 24 1 -0.3632 0.4313 0.9328 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8556 -0.0698 -2.9294 28 1 2.2877 1.8912 1.9938 29 1 3.5383 3.6280 1.8850 30 1 3.3430 4.5090 0.3338 31 1 3.2984 5.9012 2.6568 32 1 2.1079 6.2971 1.3757 33 1 -1.1345 4.2334 0.8555 34 1 -1.2013 5.3480 2.2416 35 1 -0.1546 5.7193 0.8506 36 1 0.8687 2.5342 3.5209 37 1 -0.6054 3.4930 3.7967 38 1 -0.5293 2.3496 2.4348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328244331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = -58.393650 kcal Electronic energy + Delta-G solvation = -17143.260687 eV Core-core repulsion = 14599.159341 eV Total energy + Delta-G solvation = -2544.101345 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.58059 -35.86335 -32.97689 -32.00541 -31.35216 -29.19795 -27.05068 -26.11158 -24.29488 -22.55309 -21.22214 -19.57819 -19.15073 -16.68233 -15.74466 -15.51792 -14.89974 -14.43723 -13.73811 -13.47558 -13.15460 -12.76587 -12.56182 -12.54058 -11.97115 -11.78845 -11.49899 -11.29962 -11.24603 -11.13134 -10.87266 -10.73519 -10.64531 -10.40093 -10.19422 -10.12699 -9.58653 -9.46651 -9.23222 -9.02409 -8.39602 -7.27399 -6.01759 -4.14185 3.25359 3.31193 3.33416 4.27279 4.36931 4.97162 5.18903 5.26783 5.35768 5.44904 5.54088 5.67177 5.83576 5.89885 6.03598 6.12987 6.20260 6.27637 6.34843 6.38691 6.47971 6.54474 6.56288 6.63695 6.68556 6.89385 7.10865 7.16121 7.38764 7.44361 7.57575 7.75897 8.07224 8.12341 8.31016 8.62388 8.97964 9.53253 10.98450 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.009504 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.029917 B = 2945.384316 C = 3672.299418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.079 3.921 15 H 0.081 0.919 16 C -0.172 4.172 17 C 0.045 3.955 18 O -0.378 6.378 19 C 0.097 3.903 20 C -0.157 4.157 21 C -0.115 4.115 22 H 0.036 0.964 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 6.175 5.610 9.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.302 5.302 14 C -0.033 4.033 15 H 0.099 0.901 16 C -0.211 4.211 17 C -0.033 4.033 18 O -0.297 6.297 19 C 0.058 3.942 20 C -0.215 4.215 21 C -0.172 4.172 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.181 5.984 5.535 9.658 hybrid contribution 2.217 0.260 -0.572 2.305 sum -2.963 6.243 4.963 8.508 Atomic orbital electron populations 1.21697 0.99045 0.98276 1.00310 1.21499 0.92032 0.99273 1.01668 1.19204 0.92831 0.91149 0.86039 0.95190 1.21843 0.92614 1.37970 1.05707 0.92759 1.24927 0.97764 0.95051 0.95768 1.69864 1.34891 1.38083 1.09494 0.86751 0.86288 0.78140 0.77357 1.20324 1.21296 1.20468 1.60955 1.54012 1.05155 1.10124 1.22766 0.92561 0.90337 0.97614 0.90057 1.23793 0.99399 0.96854 1.01069 1.23476 0.89961 0.96457 0.93362 1.88861 1.41292 1.62691 1.36892 1.22235 0.90956 0.89253 0.91796 1.22181 0.98404 1.00399 1.00470 1.21542 1.00677 0.96724 0.98294 0.94528 0.95714 0.93454 0.89229 0.95095 0.92866 0.85092 0.90534 0.90339 0.89945 0.92999 0.91517 0.92609 0.92990 0.92178 0.94292 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.73 37.16 0.36 -2.35 16 2 C -0.11 -2.46 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.07 1.99 -68.87 -0.14 4.93 16 4 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 5 C -0.54 -13.93 7.90 -34.44 -0.27 -14.20 16 6 H 0.05 1.38 6.76 -52.49 -0.35 1.03 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -24.45 11.30 55.43 0.63 -23.82 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.32 3.86 -99.36 -0.38 -13.70 16 14 C 0.08 1.43 2.95 -66.18 -0.20 1.24 16 15 H 0.08 1.57 7.02 -51.93 -0.36 1.20 16 16 C -0.17 -2.99 5.81 -24.73 -0.14 -3.13 16 17 C 0.04 0.67 7.67 38.21 0.29 0.97 16 18 O -0.38 -6.38 10.86 -35.23 -0.38 -6.76 16 19 C 0.10 1.57 1.19 -90.05 -0.11 1.47 16 20 C -0.16 -2.23 8.61 37.15 0.32 -1.91 16 21 C -0.11 -1.79 7.89 37.16 0.29 -1.49 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 25 H 0.09 2.34 5.96 -51.93 -0.31 2.03 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.33 6.69 7.31 -39.29 -0.29 6.40 16 29 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.06 0.97 7.43 -51.93 -0.39 0.58 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 LS Contribution 295.71 15.07 4.46 4.46 Total: -1.00 -26.38 295.71 -7.16 -33.55 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.63 Total: 5.95 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 0.17 Total: -15.40 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.24 Total: -37.52 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.38 Total: -6.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.38 -7.16 -33.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328244331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.848 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds