Wall clock time and date at job start Mon Mar 30 2020 02:45:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53000 * 109.47297 * 2 1
4 4 H 1.09005 * 109.47047 * 304.45649 * 3 2 1
5 5 C 1.50697 * 109.47177 * 184.45793 * 3 2 1
6 6 H 1.07997 * 120.00078 * 239.99825 * 5 3 2
7 7 C 1.37888 * 120.00274 * 59.99592 * 5 3 2
8 8 N 1.31507 * 119.99521 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 120.00097 * 180.02562 * 7 5 3
10 10 H 1.48494 * 109.46971 * 60.00157 * 9 7 5
11 11 H 1.48494 * 109.46885 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.46971 * 300.00551 * 9 7 5
13 13 N 1.46890 * 109.47121 * 64.45649 * 3 2 1
14 14 C 1.46909 * 110.99830 * 207.19064 * 13 3 2
15 15 H 1.08994 * 110.43399 * 35.10670 * 14 13 3
16 16 C 1.54808 * 110.48574 * 272.55617 * 14 13 3
17 17 C 1.54993 * 102.12365 * 220.29232 * 16 14 13
18 18 O 1.44470 * 103.44806 * 37.02418 * 17 16 14
19 19 C 1.43750 * 106.98390 * 319.94485 * 18 17 16
20 20 C 1.52992 * 109.87666 * 267.08931 * 19 18 17
21 21 C 1.53001 * 109.87908 * 145.93761 * 19 18 17
22 22 H 1.09004 * 109.46741 * 54.80744 * 1 2 3
23 23 H 1.08995 * 109.47271 * 174.81148 * 1 2 3
24 24 H 1.08998 * 109.46677 * 294.81208 * 1 2 3
25 25 H 1.09000 * 109.47099 * 239.99824 * 2 1 3
26 26 H 1.08999 * 109.47443 * 120.00452 * 2 1 3
27 27 H 0.97005 * 119.99700 * 179.97438 * 8 7 5
28 28 H 1.00898 * 111.00162 * 83.23873 * 13 3 2
29 29 H 1.08997 * 110.90849 * 338.51189 * 16 14 13
30 30 H 1.09003 * 110.90234 * 102.08101 * 16 14 13
31 31 H 1.09004 * 110.61660 * 155.54392 * 17 16 14
32 32 H 1.09004 * 110.62254 * 278.53943 * 17 16 14
33 33 H 1.09002 * 109.47110 * 177.83455 * 20 19 18
34 34 H 1.09007 * 109.47370 * 297.82755 * 20 19 18
35 35 H 1.08999 * 109.47461 * 57.83120 * 20 19 18
36 36 H 1.09004 * 109.46827 * 302.17145 * 21 19 18
37 37 H 1.09002 * 109.46937 * 62.16692 * 21 19 18
38 38 H 1.08993 * 109.47422 * 182.17001 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6130 1.9789 -0.8474
5 6 3.5430 1.4439 -0.1104
6 1 4.1414 1.8909 0.6696
7 6 4.1543 0.8744 -1.2074
8 7 3.4256 0.3305 -2.1575
9 14 6.0173 0.8755 -1.3439
10 1 6.5986 0.1444 -0.1895
11 1 6.4214 0.2082 -2.6074
12 1 6.5128 2.2754 -1.3435
13 7 1.6403 2.1032 1.2495
14 6 1.5127 3.5544 1.0602
15 1 1.1301 3.7760 0.0639
16 6 2.8762 4.2521 1.2848
17 6 2.4647 5.5286 2.0616
18 8 1.3929 5.0714 2.9156
19 6 0.5948 4.1631 2.1380
20 6 -0.5566 4.9204 1.4737
21 6 0.0425 3.0553 3.0372
22 1 -0.3633 0.5923 -0.8399
23 1 -0.3633 -1.0234 -0.0929
24 1 -0.3632 0.4313 0.9328
25 1 1.8934 -0.5139 -0.8900
26 1 1.8934 -0.5139 0.8899
27 1 3.8556 -0.0698 -2.9294
28 1 2.2877 1.8912 1.9938
29 1 3.5383 3.6280 1.8850
30 1 3.3430 4.5090 0.3338
31 1 3.2984 5.9012 2.6568
32 1 2.1079 6.2971 1.3757
33 1 -1.1345 4.2334 0.8555
34 1 -1.2013 5.3480 2.2416
35 1 -0.1546 5.7193 0.8506
36 1 0.8687 2.5342 3.5209
37 1 -0.6054 3.4930 3.7967
38 1 -0.5293 2.3496 2.4348
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000328244331.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:38
Heat of formation + Delta-G solvation = -73.641880 kcal
Electronic energy + Delta-G solvation = -17143.921900 eV
Core-core repulsion = 14599.159341 eV
Total energy + Delta-G solvation = -2544.762558 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.93973 -37.60168 -34.62209 -33.49982 -33.04632 -30.71706 -28.50251 -27.71888
-25.77124 -24.32580 -22.61152 -21.40983 -20.52307 -18.61441 -17.20119 -16.88373
-16.69305 -15.93366 -15.32309 -14.97024 -14.84444 -14.12564 -14.10471 -13.96972
-13.55686 -13.14878 -13.08766 -13.02164 -12.79090 -12.60362 -12.52544 -12.46893
-12.11811 -11.88528 -11.82741 -11.64345 -11.43837 -11.17294 -10.87535 -10.51983
-10.42376 -8.98872 -8.02687 -6.23189 1.38336 1.40075 1.46235 2.40781
3.00388 3.17248 3.49690 3.86976 4.03024 4.19891 4.24534 4.38548
4.44950 4.61369 4.69262 4.74890 4.79957 4.90279 4.96262 4.98669
5.07892 5.10506 5.13684 5.20014 5.22482 5.35410 5.45896 5.56547
5.62624 5.67733 5.81119 6.10811 6.15000 6.24054 6.42596 6.82871
7.04066 7.47630 8.93536
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.027072 B = 0.009504 C = 0.007623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1034.029917 B = 2945.384316 C = 3672.299418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.103 4.103
3 C 0.225 3.775
4 H -0.002 1.002
5 C -0.548 4.548
6 H 0.053 0.947
7 C 0.020 3.980
8 N -0.911 5.911
9 Si 0.944 3.056
10 H -0.274 1.274
11 H -0.287 1.287
12 H -0.275 1.275
13 N -0.661 5.661
14 C 0.075 3.925
15 H 0.066 0.934
16 C -0.171 4.171
17 C 0.051 3.949
18 O -0.387 6.387
19 C 0.100 3.900
20 C -0.153 4.153
21 C -0.112 4.112
22 H 0.029 0.971
23 H 0.041 0.959
24 H 0.060 0.940
25 H 0.059 0.941
26 H 0.027 0.973
27 H 0.260 0.740
28 H 0.331 0.669
29 H 0.064 0.936
30 H 0.066 0.934
31 H 0.102 0.898
32 H 0.068 0.932
33 H 0.067 0.933
34 H 0.070 0.930
35 H 0.055 0.945
36 H 0.050 0.950
37 H 0.054 0.946
38 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.710 7.055 6.698 10.809
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.141 4.141
3 C 0.116 3.884
4 H 0.016 0.984
5 C -0.588 4.588
6 H 0.071 0.929
7 C -0.179 4.179
8 N -0.551 5.551
9 Si 0.770 3.230
10 H -0.200 1.200
11 H -0.213 1.213
12 H -0.201 1.201
13 N -0.289 5.289
14 C -0.037 4.037
15 H 0.085 0.915
16 C -0.211 4.211
17 C -0.026 4.026
18 O -0.307 6.307
19 C 0.060 3.940
20 C -0.211 4.211
21 C -0.169 4.169
22 H 0.048 0.952
23 H 0.060 0.940
24 H 0.079 0.921
25 H 0.077 0.923
26 H 0.046 0.954
27 H 0.069 0.931
28 H 0.148 0.852
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.120 0.880
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.089 0.911
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.073 0.927
38 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -5.428 6.877 6.637 10.991
hybrid contribution 2.291 0.008 -0.902 2.462
sum -3.137 6.886 5.735 9.494
Atomic orbital electron populations
1.21556 0.96409 0.99418 1.00723 1.21361 0.94383 0.98493 0.99906
1.18954 0.91602 0.91351 0.86484 0.98383 1.22145 0.93900 1.37263
1.05458 0.92855 1.25610 1.01524 0.95077 0.95738 1.69997 1.36251
1.38928 1.09900 0.85842 0.81823 0.78126 0.77188 1.19976 1.21298
1.20054 1.60894 1.53362 1.06348 1.08263 1.22827 0.93714 0.89322
0.97853 0.91534 1.23701 0.98612 0.98092 1.00658 1.23548 0.90218
0.95356 0.93466 1.88851 1.41709 1.62724 1.37417 1.22230 0.90951
0.89590 0.91182 1.22147 0.97785 1.00349 1.00834 1.21506 1.00517
0.96446 0.98453 0.95154 0.94012 0.92087 0.92293 0.95418 0.93093
0.85194 0.91734 0.91570 0.87956 0.91420 0.91378 0.91121 0.92601
0.93132 0.92661 0.90747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.83 9.73 71.98 0.70 -4.13 16
2 C -0.10 -4.80 5.45 30.60 0.17 -4.63 16
3 C 0.22 10.72 1.99 44.17 0.09 10.80 16
4 H 0.00 -0.10 7.42 -2.38 -0.02 -0.11 16
5 C -0.55 -28.45 7.90 25.60 0.20 -28.24 16
6 H 0.05 2.72 6.76 -2.91 -0.02 2.70 16
7 C 0.02 1.09 5.29 84.66 0.45 1.54 16
8 N -0.91 -51.25 11.30 21.45 0.24 -51.01 16
9 Si 0.94 42.74 29.54 68.60 2.03 44.77 16
10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16
12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16
13 N -0.66 -25.97 3.86 -468.26 -1.81 -27.78 16
14 C 0.07 2.66 2.95 45.90 0.14 2.79 16
15 H 0.07 2.57 7.02 -2.39 -0.02 2.56 16
16 C -0.17 -5.84 5.81 31.89 0.19 -5.66 16
17 C 0.05 1.43 7.67 72.66 0.56 1.98 16
18 O -0.39 -12.14 10.86 -148.98 -1.62 -13.76 16
19 C 0.10 3.05 1.19 -10.42 -0.01 3.04 16
20 C -0.15 -4.02 8.61 71.98 0.62 -3.40 16
21 C -0.11 -3.26 7.89 71.98 0.57 -2.69 16
22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16
23 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16
24 H 0.06 2.20 7.88 -2.39 -0.02 2.18 16
25 H 0.06 3.14 5.96 -2.39 -0.01 3.12 16
26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
27 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16
28 H 0.33 13.25 7.31 -89.70 -0.66 12.59 16
29 H 0.06 2.34 7.01 -2.39 -0.02 2.33 16
30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
31 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16
32 H 0.07 1.71 8.12 -2.38 -0.02 1.69 16
33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16
35 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16
36 H 0.05 1.55 7.43 -2.38 -0.02 1.53 16
37 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16
38 H 0.07 2.21 7.89 -2.39 -0.02 2.19 16
Total: -1.00 -55.52 295.71 2.86 -52.66
By element:
Atomic # 1 Polarization: 23.36 SS G_CDS: 0.36 Total: 23.72 kcal
Atomic # 6 Polarization: -32.26 SS G_CDS: 3.66 Total: -28.60 kcal
Atomic # 7 Polarization: -77.23 SS G_CDS: -1.57 Total: -78.79 kcal
Atomic # 8 Polarization: -12.14 SS G_CDS: -1.62 Total: -13.76 kcal
Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal
Total: -55.52 2.86 -52.66 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000328244331.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.983 kcal
(2) G-P(sol) polarization free energy of solvation -55.519 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.659 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds