Wall clock time and date at job start Mon Mar 30 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 H 1.09005 * 109.47047 * 304.45649 * 3 2 1 5 5 C 1.50697 * 109.47177 * 184.45793 * 3 2 1 6 6 H 1.07997 * 120.00078 * 239.99825 * 5 3 2 7 7 C 1.37888 * 120.00274 * 59.99592 * 5 3 2 8 8 N 1.31507 * 119.99521 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46971 * 60.00157 * 9 7 5 11 11 H 1.48494 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46971 * 300.00551 * 9 7 5 13 13 N 1.46890 * 109.47121 * 64.45649 * 3 2 1 14 14 C 1.46909 * 110.99830 * 207.19064 * 13 3 2 15 15 H 1.08994 * 110.43399 * 35.10670 * 14 13 3 16 16 C 1.54808 * 110.48574 * 272.55617 * 14 13 3 17 17 C 1.54993 * 102.12365 * 220.29232 * 16 14 13 18 18 O 1.44470 * 103.44806 * 37.02418 * 17 16 14 19 19 C 1.43750 * 106.98390 * 319.94485 * 18 17 16 20 20 C 1.52992 * 109.87666 * 267.08931 * 19 18 17 21 21 C 1.53001 * 109.87908 * 145.93761 * 19 18 17 22 22 H 1.09004 * 109.46741 * 54.80744 * 1 2 3 23 23 H 1.08995 * 109.47271 * 174.81148 * 1 2 3 24 24 H 1.08998 * 109.46677 * 294.81208 * 1 2 3 25 25 H 1.09000 * 109.47099 * 239.99824 * 2 1 3 26 26 H 1.08999 * 109.47443 * 120.00452 * 2 1 3 27 27 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00162 * 83.23873 * 13 3 2 29 29 H 1.08997 * 110.90849 * 338.51189 * 16 14 13 30 30 H 1.09003 * 110.90234 * 102.08101 * 16 14 13 31 31 H 1.09004 * 110.61660 * 155.54392 * 17 16 14 32 32 H 1.09004 * 110.62254 * 278.53943 * 17 16 14 33 33 H 1.09002 * 109.47110 * 177.83455 * 20 19 18 34 34 H 1.09007 * 109.47370 * 297.82755 * 20 19 18 35 35 H 1.08999 * 109.47461 * 57.83120 * 20 19 18 36 36 H 1.09004 * 109.46827 * 302.17145 * 21 19 18 37 37 H 1.09002 * 109.46937 * 62.16692 * 21 19 18 38 38 H 1.08993 * 109.47422 * 182.17001 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6130 1.9789 -0.8474 5 6 3.5430 1.4439 -0.1104 6 1 4.1414 1.8909 0.6696 7 6 4.1543 0.8744 -1.2074 8 7 3.4256 0.3305 -2.1575 9 14 6.0173 0.8755 -1.3439 10 1 6.5986 0.1444 -0.1895 11 1 6.4214 0.2082 -2.6074 12 1 6.5128 2.2754 -1.3435 13 7 1.6403 2.1032 1.2495 14 6 1.5127 3.5544 1.0602 15 1 1.1301 3.7760 0.0639 16 6 2.8762 4.2521 1.2848 17 6 2.4647 5.5286 2.0616 18 8 1.3929 5.0714 2.9156 19 6 0.5948 4.1631 2.1380 20 6 -0.5566 4.9204 1.4737 21 6 0.0425 3.0553 3.0372 22 1 -0.3633 0.5923 -0.8399 23 1 -0.3633 -1.0234 -0.0929 24 1 -0.3632 0.4313 0.9328 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8556 -0.0698 -2.9294 28 1 2.2877 1.8912 1.9938 29 1 3.5383 3.6280 1.8850 30 1 3.3430 4.5090 0.3338 31 1 3.2984 5.9012 2.6568 32 1 2.1079 6.2971 1.3757 33 1 -1.1345 4.2334 0.8555 34 1 -1.2013 5.3480 2.2416 35 1 -0.1546 5.7193 0.8506 36 1 0.8687 2.5342 3.5209 37 1 -0.6054 3.4930 3.7967 38 1 -0.5293 2.3496 2.4348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328244331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:38 Heat of formation + Delta-G solvation = -73.641880 kcal Electronic energy + Delta-G solvation = -17143.921900 eV Core-core repulsion = 14599.159341 eV Total energy + Delta-G solvation = -2544.762558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93973 -37.60168 -34.62209 -33.49982 -33.04632 -30.71706 -28.50251 -27.71888 -25.77124 -24.32580 -22.61152 -21.40983 -20.52307 -18.61441 -17.20119 -16.88373 -16.69305 -15.93366 -15.32309 -14.97024 -14.84444 -14.12564 -14.10471 -13.96972 -13.55686 -13.14878 -13.08766 -13.02164 -12.79090 -12.60362 -12.52544 -12.46893 -12.11811 -11.88528 -11.82741 -11.64345 -11.43837 -11.17294 -10.87535 -10.51983 -10.42376 -8.98872 -8.02687 -6.23189 1.38336 1.40075 1.46235 2.40781 3.00388 3.17248 3.49690 3.86976 4.03024 4.19891 4.24534 4.38548 4.44950 4.61369 4.69262 4.74890 4.79957 4.90279 4.96262 4.98669 5.07892 5.10506 5.13684 5.20014 5.22482 5.35410 5.45896 5.56547 5.62624 5.67733 5.81119 6.10811 6.15000 6.24054 6.42596 6.82871 7.04066 7.47630 8.93536 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.009504 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.029917 B = 2945.384316 C = 3672.299418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.661 5.661 14 C 0.075 3.925 15 H 0.066 0.934 16 C -0.171 4.171 17 C 0.051 3.949 18 O -0.387 6.387 19 C 0.100 3.900 20 C -0.153 4.153 21 C -0.112 4.112 22 H 0.029 0.971 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.331 0.669 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 7.055 6.698 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.289 5.289 14 C -0.037 4.037 15 H 0.085 0.915 16 C -0.211 4.211 17 C -0.026 4.026 18 O -0.307 6.307 19 C 0.060 3.940 20 C -0.211 4.211 21 C -0.169 4.169 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.428 6.877 6.637 10.991 hybrid contribution 2.291 0.008 -0.902 2.462 sum -3.137 6.886 5.735 9.494 Atomic orbital electron populations 1.21556 0.96409 0.99418 1.00723 1.21361 0.94383 0.98493 0.99906 1.18954 0.91602 0.91351 0.86484 0.98383 1.22145 0.93900 1.37263 1.05458 0.92855 1.25610 1.01524 0.95077 0.95738 1.69997 1.36251 1.38928 1.09900 0.85842 0.81823 0.78126 0.77188 1.19976 1.21298 1.20054 1.60894 1.53362 1.06348 1.08263 1.22827 0.93714 0.89322 0.97853 0.91534 1.23701 0.98612 0.98092 1.00658 1.23548 0.90218 0.95356 0.93466 1.88851 1.41709 1.62724 1.37417 1.22230 0.90951 0.89590 0.91182 1.22147 0.97785 1.00349 1.00834 1.21506 1.00517 0.96446 0.98453 0.95154 0.94012 0.92087 0.92293 0.95418 0.93093 0.85194 0.91734 0.91570 0.87956 0.91420 0.91378 0.91121 0.92601 0.93132 0.92661 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.73 71.98 0.70 -4.13 16 2 C -0.10 -4.80 5.45 30.60 0.17 -4.63 16 3 C 0.22 10.72 1.99 44.17 0.09 10.80 16 4 H 0.00 -0.10 7.42 -2.38 -0.02 -0.11 16 5 C -0.55 -28.45 7.90 25.60 0.20 -28.24 16 6 H 0.05 2.72 6.76 -2.91 -0.02 2.70 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -51.25 11.30 21.45 0.24 -51.01 16 9 Si 0.94 42.74 29.54 68.60 2.03 44.77 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.66 -25.97 3.86 -468.26 -1.81 -27.78 16 14 C 0.07 2.66 2.95 45.90 0.14 2.79 16 15 H 0.07 2.57 7.02 -2.39 -0.02 2.56 16 16 C -0.17 -5.84 5.81 31.89 0.19 -5.66 16 17 C 0.05 1.43 7.67 72.66 0.56 1.98 16 18 O -0.39 -12.14 10.86 -148.98 -1.62 -13.76 16 19 C 0.10 3.05 1.19 -10.42 -0.01 3.04 16 20 C -0.15 -4.02 8.61 71.98 0.62 -3.40 16 21 C -0.11 -3.26 7.89 71.98 0.57 -2.69 16 22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.06 2.20 7.88 -2.39 -0.02 2.18 16 25 H 0.06 3.14 5.96 -2.39 -0.01 3.12 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 28 H 0.33 13.25 7.31 -89.70 -0.66 12.59 16 29 H 0.06 2.34 7.01 -2.39 -0.02 2.33 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.07 1.71 8.12 -2.38 -0.02 1.69 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16 36 H 0.05 1.55 7.43 -2.38 -0.02 1.53 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.21 7.89 -2.39 -0.02 2.19 16 Total: -1.00 -55.52 295.71 2.86 -52.66 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.36 Total: 23.72 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.66 Total: -28.60 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.57 Total: -78.79 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.62 Total: -13.76 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -55.52 2.86 -52.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328244331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.983 kcal (2) G-P(sol) polarization free energy of solvation -55.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds