Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 N 1.46903 * 109.46976 * 174.61772 * 3 2 1 5 5 C 1.46901 * 110.99959 * 186.58666 * 4 3 2 6 6 H 1.08990 * 109.47234 * 297.18683 * 5 4 3 7 7 C 1.52993 * 109.47093 * 57.19489 * 5 4 3 8 8 C 1.50704 * 109.46765 * 177.18806 * 5 4 3 9 9 H 1.07999 * 120.00478 * 355.02826 * 8 5 4 10 10 C 1.37878 * 119.99729 * 175.01829 * 8 5 4 11 11 N 1.31513 * 119.99880 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 119.99871 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47179 * 60.00368 * 12 10 8 14 14 H 1.48501 * 109.46956 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47279 * 300.00009 * 12 10 8 16 16 C 1.46901 * 111.00057 * 62.63102 * 4 3 2 17 17 H 1.09003 * 110.91047 * 158.21999 * 16 4 3 18 18 C 1.55567 * 110.83323 * 34.66015 * 16 4 3 19 19 C 1.54947 * 100.82346 * 207.68005 * 18 16 4 20 20 O 1.43647 * 105.22154 * 36.44783 * 19 18 16 21 21 C 1.43239 * 109.97123 * 335.51867 * 20 19 18 22 22 H 1.09004 * 109.47430 * 300.00202 * 1 2 3 23 23 H 1.08998 * 109.46943 * 60.00281 * 1 2 3 24 24 H 1.09007 * 109.47125 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47163 * 239.99339 * 2 1 3 26 26 H 1.09007 * 109.46857 * 119.99577 * 2 1 3 27 27 H 1.08998 * 109.47600 * 54.62155 * 3 2 1 28 28 H 1.08998 * 109.47347 * 294.61750 * 3 2 1 29 29 H 1.09003 * 109.47080 * 180.02562 * 7 5 4 30 30 H 1.09008 * 109.47032 * 299.99840 * 7 5 4 31 31 H 1.09000 * 109.47885 * 59.99577 * 7 5 4 32 32 H 0.97002 * 119.99808 * 180.02562 * 11 10 8 33 33 H 1.09005 * 111.22386 * 89.79067 * 18 16 4 34 34 H 1.08998 * 111.13647 * 325.54336 * 18 16 4 35 35 H 1.08992 * 110.31667 * 277.47752 * 19 18 16 36 36 H 1.09003 * 110.30847 * 155.40104 * 19 18 16 37 37 H 1.08997 * 109.83621 * 121.22626 * 21 20 19 38 38 H 1.09004 * 109.83148 * 242.20380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4446 0.1299 5 6 4.0155 2.8120 0.2905 6 1 3.7846 3.3936 -0.6018 7 6 3.3575 3.4634 1.5084 8 6 5.5087 2.7687 0.4895 9 1 6.0147 1.8186 0.5764 10 6 6.2290 3.9423 0.5604 11 7 5.6128 5.0994 0.4548 12 14 8.0800 3.8888 0.8063 13 1 8.7077 3.1501 -0.3187 14 1 8.6141 5.2738 0.8475 15 1 8.3898 3.1999 2.0848 16 6 4.1345 0.7771 -1.0164 17 1 5.1704 1.0966 -1.1306 18 6 3.3281 1.0373 -2.3210 19 6 3.6758 -0.2336 -3.1364 20 8 3.7461 -1.2941 -2.1701 21 6 4.0451 -0.7577 -0.8760 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6001 1.9834 0.8379 28 1 1.7575 1.9278 -0.9342 29 1 3.7373 4.4781 1.6273 30 1 2.2774 3.4946 1.3646 31 1 3.5884 2.8817 2.4009 32 1 6.1196 5.9250 0.5043 33 1 3.6773 1.9369 -2.8280 34 1 2.2587 1.0933 -2.1176 35 1 4.6372 -0.1119 -3.6353 36 1 2.8941 -0.4395 -3.8677 37 1 3.2525 -1.0194 -0.1750 38 1 4.9978 -1.1528 -0.5230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379518915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = -30.461504 kcal Electronic energy + Delta-G solvation = -17213.965115 eV Core-core repulsion = 14671.074998 eV Total energy + Delta-G solvation = -2542.890117 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74205 -36.58365 -33.75507 -32.18124 -30.66915 -29.06645 -27.53721 -25.72795 -24.49792 -22.21223 -20.84487 -20.58945 -19.08820 -16.52661 -16.27235 -15.66707 -14.89178 -14.63099 -14.28105 -13.96015 -13.66867 -13.07022 -12.68107 -12.56507 -12.14993 -11.67207 -11.57407 -11.45411 -11.08325 -10.98258 -10.96769 -10.66927 -10.56054 -10.29217 -10.15940 -10.02243 -9.84344 -9.69619 -9.02801 -8.87172 -8.45609 -7.21565 -6.05882 -4.09638 3.29752 3.34401 3.37418 4.27654 4.38263 4.76715 5.20052 5.26234 5.32078 5.35133 5.41990 5.52690 5.59645 5.77724 5.87401 5.94369 6.05257 6.11761 6.12361 6.22497 6.32146 6.35153 6.45167 6.56322 6.65496 6.76787 6.84603 7.00102 7.06407 7.35937 7.47464 7.67026 7.79574 8.13061 8.25494 8.55289 8.97418 9.55471 11.01962 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.009221 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.077808 B = 3035.898701 C = 3648.638848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.043 3.957 4 N -0.521 5.521 5 C 0.213 3.787 6 H 0.003 0.997 7 C -0.131 4.131 8 C -0.506 4.506 9 H 0.062 0.938 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.065 3.935 17 H 0.108 0.892 18 C -0.199 4.199 19 C 0.056 3.944 20 O -0.393 6.393 21 C 0.036 3.964 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.011 0.989 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 -7.341 -3.434 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.085 4.085 4 N -0.245 5.245 5 C 0.107 3.893 6 H 0.021 0.979 7 C -0.189 4.189 8 C -0.544 4.544 9 H 0.080 0.920 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.045 4.045 17 H 0.126 0.874 18 C -0.238 4.238 19 C -0.021 4.021 20 O -0.312 6.312 21 C -0.041 4.041 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.243 -7.594 -3.027 10.287 hybrid contribution 0.892 0.882 -0.544 1.368 sum -5.351 -6.712 -3.572 9.297 Atomic orbital electron populations 1.21761 0.96641 1.00976 1.01344 1.22069 0.94664 0.97931 1.02769 1.22313 0.90230 0.95828 1.00118 1.62170 1.02734 1.22047 1.37500 1.19236 0.94421 0.81747 0.93869 0.97913 1.21833 0.95483 1.02685 0.98871 1.21069 0.91267 0.92556 1.49544 0.91993 1.24930 0.98483 0.95442 0.95258 1.69911 1.35641 0.97256 1.50317 0.86613 0.85368 0.76922 0.78830 1.20341 1.21358 1.20173 1.23231 1.00522 0.92907 0.87886 0.87393 1.24100 1.02750 0.98425 0.98546 1.23192 1.00245 0.86850 0.91849 1.88331 1.92509 1.32111 1.18229 1.23749 1.01292 0.94102 0.84930 0.92998 0.93275 0.93130 0.90591 0.91321 0.90785 0.95107 0.90494 0.97012 0.94511 0.92896 0.90336 0.89398 0.92685 0.90735 0.89018 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.14 -2.06 4.01 -26.73 -0.11 -2.16 16 3 C 0.04 0.77 4.14 -3.82 -0.02 0.75 16 4 N -0.52 -10.78 4.40 -217.62 -0.96 -11.73 16 5 C 0.21 5.21 1.96 -68.87 -0.14 5.07 16 6 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 7 C -0.13 -3.10 8.71 37.15 0.32 -2.78 16 8 C -0.51 -13.48 7.39 -34.44 -0.25 -13.73 16 9 H 0.06 1.66 7.13 -52.49 -0.37 1.28 16 10 C 0.06 1.64 5.32 -17.82 -0.09 1.54 16 11 N -0.89 -25.07 11.69 55.43 0.65 -24.42 16 12 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.06 1.24 2.75 -65.62 -0.18 1.06 16 17 H 0.11 2.35 6.26 -51.93 -0.32 2.02 16 18 C -0.20 -3.35 5.71 -24.34 -0.14 -3.48 16 19 C 0.06 0.84 7.77 38.19 0.30 1.14 16 20 O -0.39 -6.70 10.88 -35.23 -0.38 -7.08 16 21 C 0.04 0.62 6.43 37.88 0.24 0.86 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.18 4.30 -51.93 -0.22 0.96 16 26 H 0.07 1.06 7.40 -51.92 -0.38 0.67 16 27 H 0.07 1.34 5.90 -51.93 -0.31 1.04 16 28 H 0.03 0.55 5.76 -51.93 -0.30 0.25 16 29 H 0.08 2.00 6.48 -51.93 -0.34 1.67 16 30 H 0.01 0.24 6.22 -51.92 -0.32 -0.09 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.43 4.49 -51.93 -0.23 1.20 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.54 4.27 -51.93 -0.22 1.32 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -27.43 281.75 -7.13 -34.56 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.97 Total: 1.61 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 0.31 Total: -13.23 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.31 Total: -36.16 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.43 -7.13 -34.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379518915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.100 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds