Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 N 1.46903 * 109.46976 * 174.61772 * 3 2 1 5 5 C 1.46901 * 110.99959 * 186.58666 * 4 3 2 6 6 H 1.08990 * 109.47234 * 297.18683 * 5 4 3 7 7 C 1.52993 * 109.47093 * 57.19489 * 5 4 3 8 8 C 1.50704 * 109.46765 * 177.18806 * 5 4 3 9 9 H 1.07999 * 120.00478 * 355.02826 * 8 5 4 10 10 C 1.37878 * 119.99729 * 175.01829 * 8 5 4 11 11 N 1.31513 * 119.99880 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 119.99871 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47179 * 60.00368 * 12 10 8 14 14 H 1.48501 * 109.46956 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47279 * 300.00009 * 12 10 8 16 16 C 1.46901 * 111.00057 * 62.63102 * 4 3 2 17 17 H 1.09003 * 110.91047 * 158.21999 * 16 4 3 18 18 C 1.55567 * 110.83323 * 34.66015 * 16 4 3 19 19 C 1.54947 * 100.82346 * 207.68005 * 18 16 4 20 20 O 1.43647 * 105.22154 * 36.44783 * 19 18 16 21 21 C 1.43239 * 109.97123 * 335.51867 * 20 19 18 22 22 H 1.09004 * 109.47430 * 300.00202 * 1 2 3 23 23 H 1.08998 * 109.46943 * 60.00281 * 1 2 3 24 24 H 1.09007 * 109.47125 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47163 * 239.99339 * 2 1 3 26 26 H 1.09007 * 109.46857 * 119.99577 * 2 1 3 27 27 H 1.08998 * 109.47600 * 54.62155 * 3 2 1 28 28 H 1.08998 * 109.47347 * 294.61750 * 3 2 1 29 29 H 1.09003 * 109.47080 * 180.02562 * 7 5 4 30 30 H 1.09008 * 109.47032 * 299.99840 * 7 5 4 31 31 H 1.09000 * 109.47885 * 59.99577 * 7 5 4 32 32 H 0.97002 * 119.99808 * 180.02562 * 11 10 8 33 33 H 1.09005 * 111.22386 * 89.79067 * 18 16 4 34 34 H 1.08998 * 111.13647 * 325.54336 * 18 16 4 35 35 H 1.08992 * 110.31667 * 277.47752 * 19 18 16 36 36 H 1.09003 * 110.30847 * 155.40104 * 19 18 16 37 37 H 1.08997 * 109.83621 * 121.22626 * 21 20 19 38 38 H 1.09004 * 109.83148 * 242.20380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4446 0.1299 5 6 4.0155 2.8120 0.2905 6 1 3.7846 3.3936 -0.6018 7 6 3.3575 3.4634 1.5084 8 6 5.5087 2.7687 0.4895 9 1 6.0147 1.8186 0.5764 10 6 6.2290 3.9423 0.5604 11 7 5.6128 5.0994 0.4548 12 14 8.0800 3.8888 0.8063 13 1 8.7077 3.1501 -0.3187 14 1 8.6141 5.2738 0.8475 15 1 8.3898 3.1999 2.0848 16 6 4.1345 0.7771 -1.0164 17 1 5.1704 1.0966 -1.1306 18 6 3.3281 1.0373 -2.3210 19 6 3.6758 -0.2336 -3.1364 20 8 3.7461 -1.2941 -2.1701 21 6 4.0451 -0.7577 -0.8760 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.6001 1.9834 0.8379 28 1 1.7575 1.9278 -0.9342 29 1 3.7373 4.4781 1.6273 30 1 2.2774 3.4946 1.3646 31 1 3.5884 2.8817 2.4009 32 1 6.1196 5.9250 0.5043 33 1 3.6773 1.9369 -2.8280 34 1 2.2587 1.0933 -2.1176 35 1 4.6372 -0.1119 -3.6353 36 1 2.8941 -0.4395 -3.8677 37 1 3.2525 -1.0194 -0.1750 38 1 4.9978 -1.1528 -0.5230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379518915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = -47.911915 kcal Electronic energy + Delta-G solvation = -17214.721822 eV Core-core repulsion = 14671.074998 eV Total energy + Delta-G solvation = -2543.646823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18676 -38.12428 -35.45806 -33.73740 -32.32556 -30.52039 -29.11083 -27.50783 -26.13021 -23.51330 -22.39779 -22.09978 -20.72237 -18.26051 -17.97102 -17.13184 -16.70603 -15.95771 -15.72046 -15.54875 -15.23468 -14.53015 -14.09817 -14.01127 -13.80202 -13.16614 -13.08109 -13.03366 -12.79573 -12.60227 -12.39216 -12.35249 -12.13189 -12.06679 -11.84827 -11.59158 -11.26481 -11.25703 -10.88391 -10.53021 -10.27829 -8.89926 -8.13541 -6.23500 1.41107 1.42166 1.49661 2.40657 2.93260 3.16487 3.23929 3.79906 4.04079 4.05092 4.15199 4.29169 4.30538 4.41347 4.55022 4.71438 4.74200 4.79350 4.84400 4.91252 4.93606 5.00190 5.06397 5.07786 5.11805 5.21365 5.32892 5.37654 5.46822 5.54306 5.72657 5.75541 6.02957 6.24203 6.39691 6.74493 6.91485 7.45332 8.93362 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.009221 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.077808 B = 3035.898701 C = 3648.638848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.043 3.957 4 N -0.526 5.526 5 C 0.219 3.781 6 H -0.031 1.031 7 C -0.119 4.119 8 C -0.516 4.516 9 H 0.055 0.945 10 C 0.014 3.986 11 N -0.920 5.920 12 Si 0.954 3.046 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.058 3.942 17 H 0.076 0.924 18 C -0.193 4.193 19 C 0.058 3.942 20 O -0.397 6.397 21 C 0.045 3.955 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -8.737 -3.789 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.085 4.085 4 N -0.250 5.250 5 C 0.113 3.887 6 H -0.014 1.014 7 C -0.178 4.178 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.185 4.185 11 N -0.559 5.559 12 Si 0.780 3.220 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.052 4.052 17 H 0.094 0.906 18 C -0.232 4.232 19 C -0.018 4.018 20 O -0.316 6.316 21 C -0.031 4.031 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.919 -9.011 -3.389 11.855 hybrid contribution 1.068 1.310 -0.464 1.753 sum -5.851 -7.701 -3.854 10.411 Atomic orbital electron populations 1.21725 0.94350 1.02319 1.01862 1.21962 0.96558 0.95480 1.02508 1.22402 0.88235 0.97973 0.99850 1.62113 1.04606 1.19564 1.38694 1.18991 0.93729 0.83476 0.92531 1.01388 1.21658 0.96794 1.00889 0.98421 1.21322 0.92695 0.92299 1.49173 0.92647 1.25658 1.02548 0.95168 0.95144 1.70030 1.37044 0.97683 1.51183 0.85670 0.80538 0.76965 0.78827 1.19824 1.21002 1.19754 1.23163 0.99083 0.94185 0.88757 0.90582 1.24025 1.02682 0.99017 0.97459 1.23318 1.01650 0.85260 0.91586 1.88325 1.92537 1.32597 1.18166 1.23620 1.01654 0.92264 0.85562 0.92623 0.92693 0.91382 0.90770 0.91581 0.91233 0.95145 0.93105 0.94708 0.94719 0.92959 0.91493 0.88555 0.92171 0.87742 0.88066 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.13 -3.54 4.01 30.59 0.12 -3.42 16 3 C 0.04 1.48 4.14 86.30 0.36 1.83 16 4 N -0.53 -21.75 4.40 -842.43 -3.71 -25.46 16 5 C 0.22 10.95 1.96 44.17 0.09 11.04 16 6 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 7 C -0.12 -5.74 8.71 71.98 0.63 -5.11 16 8 C -0.52 -28.06 7.39 25.60 0.19 -27.87 16 9 H 0.06 3.02 7.13 -2.91 -0.02 3.00 16 10 C 0.01 0.75 5.32 84.66 0.45 1.20 16 11 N -0.92 -52.70 11.69 21.45 0.25 -52.45 16 12 Si 0.95 43.58 29.54 68.60 2.03 45.60 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 16 C 0.06 2.22 2.75 46.27 0.13 2.35 16 17 H 0.08 3.39 6.26 -2.39 -0.01 3.38 16 18 C -0.19 -6.31 5.71 32.14 0.18 -6.12 16 19 C 0.06 1.63 7.77 72.65 0.56 2.20 16 20 O -0.40 -12.63 10.88 -148.98 -1.62 -14.25 16 21 C 0.05 1.52 6.43 72.45 0.47 1.98 16 22 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.07 2.11 4.30 -2.39 -0.01 2.10 16 26 H 0.07 1.88 7.40 -2.38 -0.02 1.87 16 27 H 0.07 2.44 5.90 -2.39 -0.01 2.43 16 28 H 0.03 1.06 5.76 -2.39 -0.01 1.04 16 29 H 0.05 2.69 6.48 -2.39 -0.02 2.68 16 30 H 0.03 1.46 6.22 -2.38 -0.01 1.44 16 31 H 0.03 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.10 2.98 4.49 -2.39 -0.01 2.97 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.10 3.21 4.27 -2.39 -0.01 3.20 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -58.57 281.75 1.87 -56.70 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.03 Total: 14.24 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.89 Total: -24.38 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -3.46 Total: -77.91 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.62 Total: -14.25 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -58.57 1.87 -56.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379518915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.792 kcal (2) G-P(sol) polarization free energy of solvation -58.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds