Wall clock time and date at job start Mon Mar 30 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1 5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1 7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.46860 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.46697 * 180.02562 * 8 7 6 10 10 H 1.07990 * 120.00204 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99819 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99946 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00014 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47027 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47255 * 119.99324 * 13 11 9 16 16 H 1.48499 * 109.46619 * 239.99825 * 13 11 9 17 17 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 18 18 C 1.52997 * 117.49576 * 3.74549 * 17 2 1 19 19 C 1.52998 * 117.49507 * 295.08473 * 17 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 24 24 H 1.09004 * 109.47313 * 64.99993 * 3 2 1 25 25 H 0.96695 * 114.00050 * 180.02562 * 4 3 2 26 26 H 1.00896 * 111.00594 * 296.04777 * 5 2 1 27 27 H 1.08993 * 109.47004 * 300.00108 * 6 5 2 28 28 H 1.09002 * 109.47091 * 59.99861 * 6 5 2 29 29 H 1.09001 * 109.47170 * 299.99770 * 7 6 5 30 30 H 1.08994 * 109.47243 * 59.99707 * 7 6 5 31 31 H 1.09004 * 109.47471 * 299.99817 * 8 7 6 32 32 H 1.09002 * 109.47344 * 60.00066 * 8 7 6 33 33 H 0.96994 * 120.00063 * 180.02562 * 12 11 9 34 34 H 1.09003 * 115.54997 * 149.41536 * 17 2 1 35 35 H 1.08991 * 117.50428 * 359.97438 * 18 17 2 36 36 H 1.09003 * 117.49788 * 145.03190 * 18 17 2 37 37 H 1.09001 * 117.49520 * 214.98230 * 19 17 2 38 38 H 1.09000 * 117.50495 * 0.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4643 1.4441 -0.1174 5 7 2.0196 -0.6926 -1.1994 6 6 1.5486 -0.0264 -2.4211 7 6 2.0782 -0.7742 -3.6463 8 6 1.5881 -0.0800 -4.9186 9 6 2.1092 -0.8171 -6.1255 10 1 2.7283 -1.6926 -5.9978 11 6 1.7964 -0.3728 -7.3927 12 7 1.0429 0.6938 -7.5483 13 14 2.4417 -1.2867 -8.8887 14 1 3.2592 -2.4449 -8.4465 15 1 1.2989 -1.7697 -9.7047 16 1 3.2804 -0.3717 -9.7038 17 6 2.0400 -0.7214 1.2492 18 6 0.9987 -1.3569 2.1726 19 6 1.7330 -0.0858 2.6067 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6054 1.9815 -0.8418 24 1 1.7517 1.9298 0.9314 25 1 3.8573 2.3276 -0.1237 26 1 1.7502 -1.6649 -1.1910 27 1 0.4588 -0.0265 -2.4378 28 1 1.9121 1.0011 -2.4379 29 1 3.1681 -0.7737 -3.6294 30 1 1.7151 -1.8018 -3.6298 31 1 0.4982 -0.0802 -4.9359 32 1 1.9516 0.9475 -4.9349 33 1 0.8225 1.0062 -8.4397 34 1 2.9949 -1.2352 1.1385 35 1 -0.0497 -1.2608 1.8904 36 1 1.2687 -2.2886 2.6698 37 1 2.4858 -0.1819 3.3891 38 1 1.1673 0.8459 2.6099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379597182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:25 Heat of formation + Delta-G solvation = -36.297428 kcal Electronic energy + Delta-G solvation = -16081.234957 eV Core-core repulsion = 13538.091776 eV Total energy + Delta-G solvation = -2543.143181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.52131 -36.14697 -35.49468 -33.43607 -31.53173 -29.10953 -26.53890 -26.01888 -23.76350 -22.26899 -21.71438 -20.06096 -18.57378 -17.17472 -16.63057 -16.19027 -15.08734 -14.85853 -14.67215 -14.37285 -13.57686 -13.47176 -13.07699 -12.51911 -12.30011 -12.06625 -11.88913 -11.60505 -11.40897 -11.17704 -10.81536 -10.71942 -10.54050 -10.43808 -10.29349 -9.95201 -9.77077 -9.58450 -9.26077 -8.98553 -8.30306 -7.98032 -5.95582 -3.97067 3.34288 3.41452 3.46575 3.72722 4.16822 4.47586 4.53060 4.63967 4.82853 4.98249 5.18642 5.30861 5.40197 5.40386 5.42650 5.49108 5.56766 5.69153 5.78555 5.86440 5.91323 5.98904 6.01714 6.18833 6.28361 6.43854 6.81703 6.89675 7.21860 7.48206 7.72997 7.75485 7.85410 7.90442 8.05628 8.49676 9.10488 9.66720 11.16019 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051152 B = 0.004675 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.253190 B = 5987.722592 C = 6087.118428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.145 3.855 3 C 0.092 3.908 4 O -0.548 6.548 5 N -0.666 5.666 6 C 0.057 3.943 7 C -0.106 4.106 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.056 0.944 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.125 4.125 18 C -0.192 4.192 19 C -0.177 4.177 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.369 0.631 26 H 0.336 0.664 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 0.488 18.967 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.053 3.947 3 C 0.013 3.987 4 O -0.351 6.351 5 N -0.296 5.296 6 C -0.071 4.071 7 C -0.144 4.144 8 C -0.015 4.015 9 C -0.554 4.554 10 H 0.074 0.926 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.143 4.143 18 C -0.229 4.229 19 C -0.215 4.215 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.214 0.786 26 H 0.154 0.846 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.279 0.264 18.812 18.816 hybrid contribution -0.668 -0.021 -0.882 1.107 sum -0.947 0.243 17.931 17.957 Atomic orbital electron populations 1.22638 0.96783 1.02669 1.02406 1.20364 0.91121 0.92900 0.90306 1.22190 0.82336 0.95460 0.98688 1.86645 1.19105 1.32312 1.97025 1.60591 1.63003 1.05546 1.00430 1.22186 0.96554 0.99075 0.89272 1.21600 1.00540 0.98331 0.93901 1.19066 0.96162 0.95758 0.90546 1.21316 1.31025 1.12096 0.91002 0.92615 1.25032 0.95293 0.95127 0.99114 1.69979 1.37623 1.23840 1.22303 0.86545 0.78678 0.79891 0.82960 1.19708 1.21086 1.21038 1.22202 0.99979 1.02597 0.89558 1.23213 0.98337 0.96911 1.04459 1.22898 1.03500 0.96888 0.98193 0.91612 0.92266 0.91586 0.93721 0.94102 0.78637 0.84563 0.95757 0.91479 0.92532 0.93804 0.96928 0.96675 0.93160 0.86924 0.88377 0.89143 0.89021 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 6.80 37.16 0.25 -1.90 16 2 C 0.14 1.87 0.60 -131.60 -0.08 1.79 16 3 C 0.09 1.16 5.26 37.15 0.20 1.36 16 4 O -0.55 -7.53 13.19 -35.23 -0.46 -7.99 16 5 N -0.67 -10.42 5.86 -99.96 -0.59 -11.01 16 6 C 0.06 1.04 4.90 -3.82 -0.02 1.02 16 7 C -0.11 -2.30 5.41 -26.73 -0.14 -2.44 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 9 C -0.52 -15.06 9.11 -34.43 -0.31 -15.38 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 13 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C -0.12 -1.46 5.22 -90.62 -0.47 -1.94 16 18 C -0.19 -1.87 9.51 -26.69 -0.25 -2.12 16 19 C -0.18 -1.72 9.35 -26.69 -0.25 -1.97 16 20 H 0.06 0.83 6.40 -51.93 -0.33 0.50 16 21 H 0.06 0.59 7.18 -51.93 -0.37 0.21 16 22 H 0.07 0.74 7.23 -51.93 -0.38 0.36 16 23 H 0.04 0.59 6.68 -51.93 -0.35 0.25 16 24 H 0.04 0.43 6.82 -51.93 -0.35 0.08 16 25 H 0.37 3.45 9.12 45.56 0.42 3.86 16 26 H 0.34 5.02 8.72 -39.29 -0.34 4.68 16 27 H 0.02 0.43 6.30 -51.93 -0.33 0.11 16 28 H 0.07 1.26 6.42 -51.93 -0.33 0.93 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.10 0.91 5.82 -51.93 -0.30 0.61 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.82 7.05 -51.93 -0.37 0.45 16 LS Contribution 300.56 15.07 4.53 4.53 Total: -1.00 -31.96 300.56 -7.66 -39.62 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.54 Total: 4.12 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.32 Total: -19.60 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.15 Total: -37.76 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.46 Total: -7.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.96 -7.66 -39.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.321 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds