Wall clock time and date at job start Mon Mar 30 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1 5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1 7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.46860 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.46697 * 180.02562 * 8 7 6 10 10 H 1.07990 * 120.00204 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99819 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99946 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00014 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47027 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47255 * 119.99324 * 13 11 9 16 16 H 1.48499 * 109.46619 * 239.99825 * 13 11 9 17 17 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 18 18 C 1.52997 * 117.49576 * 3.74549 * 17 2 1 19 19 C 1.52998 * 117.49507 * 295.08473 * 17 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 24 24 H 1.09004 * 109.47313 * 64.99993 * 3 2 1 25 25 H 0.96695 * 114.00050 * 180.02562 * 4 3 2 26 26 H 1.00896 * 111.00594 * 296.04777 * 5 2 1 27 27 H 1.08993 * 109.47004 * 300.00108 * 6 5 2 28 28 H 1.09002 * 109.47091 * 59.99861 * 6 5 2 29 29 H 1.09001 * 109.47170 * 299.99770 * 7 6 5 30 30 H 1.08994 * 109.47243 * 59.99707 * 7 6 5 31 31 H 1.09004 * 109.47471 * 299.99817 * 8 7 6 32 32 H 1.09002 * 109.47344 * 60.00066 * 8 7 6 33 33 H 0.96994 * 120.00063 * 180.02562 * 12 11 9 34 34 H 1.09003 * 115.54997 * 149.41536 * 17 2 1 35 35 H 1.08991 * 117.50428 * 359.97438 * 18 17 2 36 36 H 1.09003 * 117.49788 * 145.03190 * 18 17 2 37 37 H 1.09001 * 117.49520 * 214.98230 * 19 17 2 38 38 H 1.09000 * 117.50495 * 0.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4643 1.4441 -0.1174 5 7 2.0196 -0.6926 -1.1994 6 6 1.5486 -0.0264 -2.4211 7 6 2.0782 -0.7742 -3.6463 8 6 1.5881 -0.0800 -4.9186 9 6 2.1092 -0.8171 -6.1255 10 1 2.7283 -1.6926 -5.9978 11 6 1.7964 -0.3728 -7.3927 12 7 1.0429 0.6938 -7.5483 13 14 2.4417 -1.2867 -8.8887 14 1 3.2592 -2.4449 -8.4465 15 1 1.2989 -1.7697 -9.7047 16 1 3.2804 -0.3717 -9.7038 17 6 2.0400 -0.7214 1.2492 18 6 0.9987 -1.3569 2.1726 19 6 1.7330 -0.0858 2.6067 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6054 1.9815 -0.8418 24 1 1.7517 1.9298 0.9314 25 1 3.8573 2.3276 -0.1237 26 1 1.7502 -1.6649 -1.1910 27 1 0.4588 -0.0265 -2.4378 28 1 1.9121 1.0011 -2.4379 29 1 3.1681 -0.7737 -3.6294 30 1 1.7151 -1.8018 -3.6298 31 1 0.4982 -0.0802 -4.9359 32 1 1.9516 0.9475 -4.9349 33 1 0.8225 1.0062 -8.4397 34 1 2.9949 -1.2352 1.1385 35 1 -0.0497 -1.2608 1.8904 36 1 1.2687 -2.2886 2.6698 37 1 2.4858 -0.1819 3.3891 38 1 1.1673 0.8459 2.6099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379597182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:25 Heat of formation + Delta-G solvation = -59.476997 kcal Electronic energy + Delta-G solvation = -16082.240099 eV Core-core repulsion = 13538.091776 eV Total energy + Delta-G solvation = -2544.148323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51374 -37.17933 -36.84075 -35.30961 -33.29720 -30.52841 -27.94659 -27.33397 -25.27146 -23.23231 -23.01699 -21.79234 -19.59105 -18.49194 -18.18223 -17.55307 -16.59693 -16.36134 -15.95636 -15.62023 -14.90658 -14.65352 -14.40395 -14.15707 -13.61139 -13.50054 -13.25514 -12.96257 -12.72908 -12.58818 -12.46417 -12.20166 -12.13346 -11.64417 -11.50714 -11.45810 -11.24219 -10.95312 -10.80177 -10.72001 -10.56035 -9.22843 -8.20583 -6.31530 1.39670 1.40221 1.54041 2.40996 2.88459 3.12393 3.14774 3.50565 3.74981 3.98066 4.14162 4.22467 4.28931 4.38668 4.41550 4.48170 4.52481 4.57935 4.71090 4.78649 4.82406 4.96634 5.00577 5.03451 5.15467 5.24343 5.27514 5.30294 5.38263 5.52788 5.75055 5.85375 6.17228 6.30181 6.54213 6.85064 7.01837 7.37667 8.91652 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051152 B = 0.004675 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.253190 B = 5987.722592 C = 6087.118428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.142 3.858 3 C 0.089 3.911 4 O -0.571 6.571 5 N -0.673 5.673 6 C 0.075 3.925 7 C -0.091 4.091 8 C 0.027 3.973 9 C -0.543 4.543 10 H 0.057 0.943 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.143 4.143 18 C -0.181 4.181 19 C -0.166 4.166 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.385 0.615 26 H 0.340 0.660 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.049 0.951 31 H -0.008 1.008 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -0.200 19.941 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.050 3.950 3 C 0.010 3.990 4 O -0.377 6.377 5 N -0.303 5.303 6 C -0.054 4.054 7 C -0.129 4.129 8 C -0.010 4.010 9 C -0.581 4.581 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.203 1.203 17 C -0.161 4.161 18 C -0.218 4.218 19 C -0.203 4.203 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.233 0.767 26 H 0.159 0.841 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.314 -0.418 19.810 19.817 hybrid contribution -0.646 0.229 -1.138 1.329 sum -0.960 -0.189 18.672 18.697 Atomic orbital electron populations 1.22582 0.95568 1.03090 1.02727 1.20492 0.92066 0.92947 0.89459 1.22282 0.81862 0.95416 0.99410 1.86592 1.19787 1.34155 1.97118 1.60504 1.63485 1.05864 1.00467 1.21832 0.96399 0.98080 0.89110 1.21358 0.99720 0.98468 0.93396 1.18954 0.94682 0.94714 0.92680 1.21724 1.31497 1.12562 0.92321 0.92428 1.25991 0.95306 0.95949 1.02574 1.70101 1.38583 1.25291 1.23428 0.85379 0.78296 0.78701 0.78554 1.18727 1.20142 1.20259 1.22014 0.99989 1.04180 0.89963 1.23281 0.98140 0.97394 1.02995 1.22990 1.03405 0.97328 0.96623 0.93078 0.90106 0.91113 0.94965 0.91591 0.76730 0.84143 0.95489 0.92463 0.93515 0.93248 0.98977 0.99225 0.92738 0.88848 0.87652 0.88305 0.88218 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.87 6.80 71.98 0.49 -3.38 16 2 C 0.14 3.49 0.60 3.53 0.00 3.49 16 3 C 0.09 2.15 5.26 71.98 0.38 2.53 16 4 O -0.57 -15.31 13.19 -148.98 -1.96 -17.27 16 5 N -0.67 -20.82 5.86 -470.18 -2.75 -23.57 16 6 C 0.07 2.73 4.90 86.30 0.42 3.15 16 7 C -0.09 -4.04 5.41 30.59 0.17 -3.87 16 8 C 0.03 1.51 4.97 29.85 0.15 1.65 16 9 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 10 H 0.06 3.30 7.74 -2.92 -0.02 3.28 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 12 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 13 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 14 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 C -0.14 -3.11 5.22 -10.79 -0.06 -3.17 16 18 C -0.18 -3.04 9.51 30.62 0.29 -2.75 16 19 C -0.17 -2.77 9.35 30.62 0.29 -2.48 16 20 H 0.05 1.24 6.40 -2.39 -0.02 1.23 16 21 H 0.08 1.37 7.18 -2.39 -0.02 1.35 16 22 H 0.07 1.44 7.23 -2.38 -0.02 1.42 16 23 H 0.03 0.85 6.68 -2.39 -0.02 0.83 16 24 H 0.07 1.25 6.82 -2.39 -0.02 1.23 16 25 H 0.38 6.94 9.12 -74.06 -0.68 6.27 16 26 H 0.34 9.96 8.72 -89.70 -0.78 9.18 16 27 H 0.03 0.97 6.30 -2.39 -0.02 0.96 16 28 H 0.06 2.20 6.42 -2.39 -0.02 2.19 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 1.63 5.82 -2.39 -0.01 1.62 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.10 1.47 7.05 -2.39 -0.02 1.46 16 Total: -1.00 -68.37 300.56 0.01 -68.36 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.41 Total: 19.10 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 2.82 Total: -36.32 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.47 Total: -81.21 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.96 Total: -17.27 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.37 0.01 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.888 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds