Wall clock time and date at job start Mon Mar 30 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47079 * 2 1 4 4 H 1.09002 * 109.46918 * 305.00061 * 3 2 1 5 5 N 1.46902 * 109.46969 * 64.99737 * 3 2 1 6 6 C 1.46889 * 110.99862 * 216.80030 * 5 3 2 7 7 C 1.53006 * 109.47102 * 86.95911 * 6 5 3 8 8 C 1.50694 * 115.54924 * 40.02254 * 7 6 5 9 9 H 1.08005 * 120.00104 * 245.08931 * 8 7 6 10 10 C 1.37876 * 120.00129 * 65.09576 * 8 7 6 11 11 N 1.31513 * 119.99725 * 5.30580 * 10 8 7 12 12 Si 1.86796 * 120.00290 * 185.30445 * 10 8 7 13 13 H 1.48501 * 109.47207 * 89.99579 * 12 10 8 14 14 H 1.48495 * 109.47308 * 209.99955 * 12 10 8 15 15 H 1.48499 * 109.47266 * 329.99944 * 12 10 8 16 16 C 1.53001 * 117.49698 * 254.31693 * 7 6 5 17 17 C 1.52994 * 60.00249 * 252.51125 * 16 7 6 18 18 C 1.53003 * 109.47105 * 184.99820 * 3 2 1 19 19 H 1.08998 * 109.46974 * 60.77537 * 18 3 2 20 20 C 1.52995 * 109.46754 * 180.77633 * 18 3 2 21 21 O 1.42901 * 109.47096 * 300.77792 * 18 3 2 22 22 H 1.08997 * 109.47414 * 300.00225 * 1 2 3 23 23 H 1.09004 * 109.47207 * 60.00055 * 1 2 3 24 24 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47437 * 240.00318 * 2 1 3 26 26 H 1.08996 * 109.47429 * 119.99768 * 2 1 3 27 27 H 1.00899 * 110.99949 * 92.84871 * 5 3 2 28 28 H 1.09003 * 109.47216 * 206.95440 * 6 5 3 29 29 H 1.09000 * 109.47709 * 326.95396 * 6 5 3 30 30 H 0.97006 * 119.99875 * 185.00468 * 11 10 8 31 31 H 1.09007 * 117.49718 * 0.02562 * 16 7 6 32 32 H 1.08995 * 117.50197 * 145.01512 * 16 7 6 33 33 H 1.09005 * 117.49576 * 252.51305 * 17 16 7 34 34 H 1.08997 * 117.52296 * 107.47822 * 17 16 7 35 35 H 1.09010 * 109.47052 * 177.93501 * 20 18 3 36 36 H 1.08996 * 109.47250 * 297.92980 * 20 18 3 37 37 H 1.08994 * 109.47402 * 57.93453 * 20 18 3 38 38 H 0.96705 * 113.99678 * 300.00226 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6513 2.0993 1.2552 6 6 1.3010 3.5073 1.0261 7 6 -0.1773 3.6096 0.6451 8 6 -1.1093 2.7039 1.4079 9 1 -1.6398 1.9170 0.8922 10 6 -1.2849 2.8797 2.7640 11 7 -0.7219 3.9004 3.3731 12 14 -2.3225 1.6684 3.7364 13 1 -1.4589 0.5712 4.2420 14 1 -2.9561 2.3680 4.8827 15 1 -3.3772 1.1029 2.8573 16 6 -0.5109 3.8946 -0.8207 17 6 -0.7075 4.9849 0.2345 18 6 3.5648 1.4444 -0.1257 19 1 3.8526 0.9694 -1.0635 20 6 4.0763 2.8862 -0.1062 21 8 4.1338 0.7222 0.9683 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.3804 2.0162 1.9477 28 1 1.4820 4.0795 1.9360 29 1 1.9131 3.9072 0.2177 30 1 -0.7846 3.9845 4.3374 31 1 0.3228 4.0088 -1.5136 32 1 -1.4046 3.4268 -1.2336 33 1 -1.7306 5.2344 0.5158 34 1 -0.0033 5.8168 0.2363 35 1 5.1651 2.8862 -0.1588 36 1 3.6713 3.4270 -0.9615 37 1 3.7571 3.3726 0.8155 38 1 3.9185 1.0897 1.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386791033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:42 Heat of formation + Delta-G solvation = -32.273917 kcal Electronic energy + Delta-G solvation = -17323.721487 eV Core-core repulsion = 14780.752778 eV Total energy + Delta-G solvation = -2542.968709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.83186 -36.48245 -34.17195 -31.83315 -31.57179 -30.14199 -26.49474 -25.16704 -23.63434 -21.57321 -21.13429 -19.89444 -18.88280 -16.71796 -15.99273 -15.49249 -14.56896 -14.45918 -14.06296 -13.90942 -13.44226 -13.08392 -12.48522 -12.18427 -12.08954 -11.69426 -11.53385 -11.20271 -11.13389 -10.85048 -10.81257 -10.53427 -10.40725 -10.07103 -9.97064 -9.90617 -9.72779 -9.32941 -8.81571 -8.34110 -7.88965 -7.30426 -5.86324 -3.82627 3.41104 3.46990 3.50101 4.51222 4.56800 4.89752 5.14187 5.25313 5.31047 5.40851 5.55158 5.80402 5.81107 5.96282 6.06686 6.15128 6.18362 6.26419 6.37819 6.41791 6.56896 6.60897 6.69585 6.74460 6.75568 6.96188 7.07861 7.11222 7.45545 7.50113 7.55777 7.76815 8.05896 8.09138 8.33209 8.64039 9.10401 9.77153 11.24750 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.010914 C = 0.009564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.819151 B = 2564.802010 C = 2927.038766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C 0.061 3.939 4 H 0.079 0.921 5 N -0.640 5.640 6 C 0.105 3.895 7 C 0.067 3.933 8 C -0.448 4.448 9 H 0.059 0.941 10 C 0.076 3.924 11 N -0.889 5.889 12 Si 0.879 3.121 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.278 1.278 16 C -0.216 4.216 17 C -0.182 4.182 18 C 0.072 3.928 19 H 0.093 0.907 20 C -0.188 4.188 21 O -0.562 6.562 22 H 0.103 0.897 23 H 0.040 0.960 24 H 0.027 0.973 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.315 0.685 28 H 0.071 0.929 29 H 0.007 0.993 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 -2.698 -5.203 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 C -0.050 4.050 4 H 0.097 0.903 5 N -0.270 5.270 6 C -0.024 4.024 7 C 0.066 3.934 8 C -0.486 4.486 9 H 0.077 0.923 10 C -0.125 4.125 11 N -0.527 5.527 12 Si 0.708 3.292 13 H -0.207 1.207 14 H -0.219 1.219 15 H -0.203 1.203 16 C -0.253 4.253 17 C -0.221 4.221 18 C 0.012 3.988 19 H 0.110 0.890 20 C -0.245 4.245 21 O -0.368 6.368 22 H 0.122 0.878 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.486 -3.159 -5.532 9.091 hybrid contribution 0.127 0.253 0.775 0.825 sum 6.613 -2.906 -4.758 8.649 Atomic orbital electron populations 1.21944 0.94933 0.99391 1.04847 1.21289 0.96983 0.94927 1.00105 1.22332 0.91361 0.96725 0.94563 0.90309 1.60184 1.43171 1.16469 1.07205 1.21544 0.95592 0.86692 0.98597 1.18901 0.92257 0.93277 0.88954 1.20194 1.22667 1.13401 0.92337 0.92318 1.24751 0.95624 0.94432 0.97664 1.69974 1.45999 1.28127 1.08630 0.86813 0.80659 0.81827 0.79922 1.20685 1.21942 1.20280 1.22949 1.01265 1.06979 0.94147 1.22708 1.01080 0.93409 1.04873 1.22683 0.94643 0.91211 0.90311 0.88959 1.22601 1.01235 0.97653 1.03042 1.86543 1.76107 1.57157 1.17030 0.87832 0.94061 0.95413 0.94061 0.92246 0.86682 0.91035 0.97536 0.93620 0.92334 0.90902 0.90450 0.92360 0.92484 0.91728 0.91842 0.78035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.53 37.15 0.35 -2.49 16 2 C -0.09 -1.58 5.39 -26.73 -0.14 -1.72 16 3 C 0.06 1.00 1.95 -67.71 -0.13 0.87 16 4 H 0.08 1.39 7.35 -51.93 -0.38 1.01 16 5 N -0.64 -11.87 4.82 -106.72 -0.51 -12.38 16 6 C 0.10 2.15 4.39 -3.83 -0.02 2.13 16 7 C 0.07 1.55 1.58 -155.66 -0.25 1.30 16 8 C -0.45 -11.43 6.58 -34.44 -0.23 -11.66 16 9 H 0.06 1.54 6.56 -52.48 -0.34 1.19 16 10 C 0.08 2.01 5.39 -17.82 -0.10 1.92 16 11 N -0.89 -24.30 12.69 55.43 0.70 -23.60 16 12 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.22 -4.56 9.67 -26.73 -0.26 -4.82 16 17 C -0.18 -4.14 9.95 -26.73 -0.27 -4.41 16 18 C 0.07 1.02 3.38 -26.73 -0.09 0.93 16 19 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 20 C -0.19 -2.48 8.21 37.15 0.30 -2.17 16 21 O -0.56 -8.19 12.72 -35.23 -0.45 -8.64 16 22 H 0.10 2.24 4.88 -51.93 -0.25 1.99 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 27 H 0.31 5.36 6.25 -39.29 -0.25 5.12 16 28 H 0.07 1.64 7.74 -51.93 -0.40 1.23 16 29 H 0.01 0.13 5.60 -51.93 -0.29 -0.17 16 30 H 0.25 6.80 8.32 -40.82 -0.34 6.46 16 31 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.84 7.85 -51.93 -0.41 0.44 16 37 H 0.06 0.89 6.05 -51.93 -0.31 0.57 16 38 H 0.37 4.71 7.20 45.56 0.33 5.04 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -26.98 295.96 -7.29 -34.27 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.65 Total: 9.94 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.82 Total: -20.12 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.19 Total: -35.98 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.45 Total: -8.64 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.98 -7.29 -34.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386791033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.998 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds