Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47079 * 2 1 4 4 H 1.09002 * 109.46918 * 305.00061 * 3 2 1 5 5 N 1.46902 * 109.46969 * 64.99737 * 3 2 1 6 6 C 1.46889 * 110.99862 * 216.80030 * 5 3 2 7 7 C 1.53006 * 109.47102 * 86.95911 * 6 5 3 8 8 C 1.50694 * 115.54924 * 40.02254 * 7 6 5 9 9 H 1.08005 * 120.00104 * 245.08931 * 8 7 6 10 10 C 1.37876 * 120.00129 * 65.09576 * 8 7 6 11 11 N 1.31513 * 119.99725 * 5.30580 * 10 8 7 12 12 Si 1.86796 * 120.00290 * 185.30445 * 10 8 7 13 13 H 1.48501 * 109.47207 * 89.99579 * 12 10 8 14 14 H 1.48495 * 109.47308 * 209.99955 * 12 10 8 15 15 H 1.48499 * 109.47266 * 329.99944 * 12 10 8 16 16 C 1.53001 * 117.49698 * 254.31693 * 7 6 5 17 17 C 1.52994 * 60.00249 * 252.51125 * 16 7 6 18 18 C 1.53003 * 109.47105 * 184.99820 * 3 2 1 19 19 H 1.08998 * 109.46974 * 60.77537 * 18 3 2 20 20 C 1.52995 * 109.46754 * 180.77633 * 18 3 2 21 21 O 1.42901 * 109.47096 * 300.77792 * 18 3 2 22 22 H 1.08997 * 109.47414 * 300.00225 * 1 2 3 23 23 H 1.09004 * 109.47207 * 60.00055 * 1 2 3 24 24 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47437 * 240.00318 * 2 1 3 26 26 H 1.08996 * 109.47429 * 119.99768 * 2 1 3 27 27 H 1.00899 * 110.99949 * 92.84871 * 5 3 2 28 28 H 1.09003 * 109.47216 * 206.95440 * 6 5 3 29 29 H 1.09000 * 109.47709 * 326.95396 * 6 5 3 30 30 H 0.97006 * 119.99875 * 185.00468 * 11 10 8 31 31 H 1.09007 * 117.49718 * 0.02562 * 16 7 6 32 32 H 1.08995 * 117.50197 * 145.01512 * 16 7 6 33 33 H 1.09005 * 117.49576 * 252.51305 * 17 16 7 34 34 H 1.08997 * 117.52296 * 107.47822 * 17 16 7 35 35 H 1.09010 * 109.47052 * 177.93501 * 20 18 3 36 36 H 1.08996 * 109.47250 * 297.92980 * 20 18 3 37 37 H 1.08994 * 109.47402 * 57.93453 * 20 18 3 38 38 H 0.96705 * 113.99678 * 300.00226 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6513 2.0993 1.2552 6 6 1.3010 3.5073 1.0261 7 6 -0.1773 3.6096 0.6451 8 6 -1.1093 2.7039 1.4079 9 1 -1.6398 1.9170 0.8922 10 6 -1.2849 2.8797 2.7640 11 7 -0.7219 3.9004 3.3731 12 14 -2.3225 1.6684 3.7364 13 1 -1.4589 0.5712 4.2420 14 1 -2.9561 2.3680 4.8827 15 1 -3.3772 1.1029 2.8573 16 6 -0.5109 3.8946 -0.8207 17 6 -0.7075 4.9849 0.2345 18 6 3.5648 1.4444 -0.1257 19 1 3.8526 0.9694 -1.0635 20 6 4.0763 2.8862 -0.1062 21 8 4.1338 0.7222 0.9683 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.3804 2.0162 1.9477 28 1 1.4820 4.0795 1.9360 29 1 1.9131 3.9072 0.2177 30 1 -0.7846 3.9845 4.3374 31 1 0.3228 4.0088 -1.5136 32 1 -1.4046 3.4268 -1.2336 33 1 -1.7306 5.2344 0.5158 34 1 -0.0033 5.8168 0.2363 35 1 5.1651 2.8862 -0.1588 36 1 3.6713 3.4270 -0.9615 37 1 3.7571 3.3726 0.8155 38 1 3.9185 1.0897 1.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386791033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = -49.557825 kcal Electronic energy + Delta-G solvation = -17324.470973 eV Core-core repulsion = 14780.752778 eV Total energy + Delta-G solvation = -2543.718195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14973 -38.11233 -35.51661 -33.81877 -33.03422 -31.31844 -28.03327 -26.99376 -25.17743 -22.93894 -22.76032 -21.23692 -20.71732 -17.95343 -17.79861 -16.84796 -16.40399 -15.84212 -15.64042 -15.25096 -15.03900 -14.62958 -14.00984 -13.54463 -13.42958 -13.30751 -13.04523 -12.77887 -12.70049 -12.55901 -12.41359 -12.18368 -11.99321 -11.74304 -11.49336 -11.36135 -11.14687 -10.89035 -10.69059 -10.24503 -9.73850 -8.74387 -7.88795 -5.86700 1.47180 1.50996 1.55188 2.58517 3.30626 3.42350 3.61260 3.70564 3.94397 4.11882 4.28197 4.42493 4.51602 4.56422 4.64162 4.75466 4.83299 4.86986 4.92760 5.04121 5.04722 5.08862 5.22668 5.26445 5.26741 5.35453 5.36950 5.57481 5.67752 5.76589 5.98330 6.04899 6.49604 6.68248 6.77653 6.94493 7.11700 7.73869 9.21349 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.010914 C = 0.009564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.819151 B = 2564.802010 C = 2927.038766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C 0.066 3.934 4 H 0.070 0.930 5 N -0.653 5.653 6 C 0.122 3.878 7 C 0.044 3.956 8 C -0.442 4.442 9 H 0.048 0.952 10 C 0.038 3.962 11 N -0.912 5.912 12 Si 0.923 3.077 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.278 1.278 16 C -0.192 4.192 17 C -0.192 4.192 18 C 0.081 3.919 19 H 0.105 0.895 20 C -0.183 4.183 21 O -0.570 6.570 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.323 0.677 28 H 0.043 0.957 29 H 0.026 0.974 30 H 0.250 0.750 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 -3.392 -6.362 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.044 4.044 4 H 0.088 0.912 5 N -0.284 5.284 6 C -0.008 4.008 7 C 0.043 3.957 8 C -0.480 4.480 9 H 0.066 0.934 10 C -0.160 4.160 11 N -0.553 5.553 12 Si 0.752 3.248 13 H -0.207 1.207 14 H -0.225 1.225 15 H -0.203 1.203 16 C -0.229 4.229 17 C -0.230 4.230 18 C 0.020 3.980 19 H 0.123 0.877 20 C -0.240 4.240 21 O -0.377 6.377 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.620 -3.866 -6.696 10.855 hybrid contribution -0.258 0.439 1.090 1.203 sum 7.362 -3.426 -5.606 9.867 Atomic orbital electron populations 1.21830 0.96404 0.99559 1.02845 1.21261 0.95533 0.95283 1.00817 1.22280 0.93113 0.96030 0.93026 0.91207 1.60059 1.44224 1.15431 1.08699 1.21240 0.94162 0.87640 0.97732 1.19076 0.93360 0.92960 0.90330 1.20344 1.22306 1.12903 0.92415 0.93417 1.25191 0.96718 0.95526 0.98540 1.70063 1.47589 1.29277 1.08373 0.86114 0.79553 0.80398 0.78721 1.20674 1.22493 1.20307 1.22920 1.01740 1.04835 0.93456 1.22648 1.00139 0.93970 1.06238 1.22600 0.92667 0.91961 0.90736 0.87673 1.22540 1.02076 0.96814 1.02604 1.86531 1.76049 1.57533 1.17589 0.91126 0.94543 0.94254 0.91970 0.92766 0.85813 0.93804 0.95638 0.94087 0.89788 0.91296 0.92638 0.91236 0.91177 0.91386 0.92897 0.77240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.53 71.98 0.69 -4.62 16 2 C -0.09 -2.82 5.39 30.60 0.16 -2.65 16 3 C 0.07 2.02 1.95 44.92 0.09 2.11 16 4 H 0.07 2.28 7.35 -2.39 -0.02 2.27 16 5 N -0.65 -23.47 4.82 -491.55 -2.37 -25.84 16 6 C 0.12 4.88 4.39 86.31 0.38 5.26 16 7 C 0.04 1.99 1.58 -52.93 -0.08 1.90 16 8 C -0.44 -22.53 6.58 25.60 0.17 -22.36 16 9 H 0.05 2.50 6.56 -2.91 -0.02 2.48 16 10 C 0.04 2.03 5.39 84.65 0.46 2.49 16 11 N -0.91 -50.42 12.69 21.45 0.27 -50.15 16 12 Si 0.92 43.64 29.54 68.60 2.03 45.67 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 C -0.19 -7.78 9.67 30.59 0.30 -7.48 16 17 C -0.19 -8.59 9.95 30.59 0.30 -8.28 16 18 C 0.08 2.05 3.38 30.59 0.10 2.15 16 19 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 20 C -0.18 -4.31 8.21 71.98 0.59 -3.72 16 21 O -0.57 -15.14 12.72 -148.98 -1.90 -17.04 16 22 H 0.07 3.02 4.88 -2.39 -0.01 3.00 16 23 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.74 7.82 -2.39 -0.02 1.72 16 27 H 0.32 10.66 6.25 -89.69 -0.56 10.09 16 28 H 0.04 2.00 7.74 -2.39 -0.02 1.98 16 29 H 0.03 0.92 5.60 -2.39 -0.01 0.91 16 30 H 0.25 13.56 8.32 -92.70 -0.77 12.79 16 31 H 0.08 2.97 8.09 -2.38 -0.02 2.95 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.07 1.56 7.85 -2.39 -0.02 1.54 16 37 H 0.05 1.36 6.05 -2.39 -0.01 1.35 16 38 H 0.38 8.85 7.20 -74.05 -0.53 8.32 16 Total: -1.00 -56.14 295.96 1.14 -55.00 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.05 Total: 27.57 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.15 Total: -35.22 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -2.10 Total: -75.99 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.90 Total: -17.04 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -56.14 1.14 -55.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386791033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.445 kcal (2) G-P(sol) polarization free energy of solvation -56.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds