Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52995 * 109.47403 * 2 1 4 4 H 1.09003 * 109.46986 * 55.14866 * 3 2 1 5 5 N 1.46900 * 109.47071 * 295.14878 * 3 2 1 6 6 C 1.46900 * 110.99973 * 89.26552 * 5 3 2 7 7 C 1.52999 * 109.47362 * 89.85731 * 6 5 3 8 8 C 1.50699 * 115.54865 * 319.83574 * 7 6 5 9 9 H 1.08001 * 120.00442 * 97.59003 * 8 7 6 10 10 C 1.37880 * 119.99645 * 277.58959 * 8 7 6 11 11 N 1.31518 * 119.99958 * 187.78167 * 10 8 7 12 12 Si 1.86798 * 120.00015 * 7.78673 * 10 8 7 13 13 H 1.48494 * 109.47155 * 95.29401 * 12 10 8 14 14 H 1.48500 * 109.46741 * 215.28965 * 12 10 8 15 15 H 1.48497 * 109.47263 * 335.28961 * 12 10 8 16 16 C 1.52997 * 117.49845 * 174.16398 * 7 6 5 17 17 C 1.52999 * 60.03188 * 252.49538 * 16 7 6 18 18 C 1.53001 * 109.47487 * 175.14644 * 3 2 1 19 19 H 1.09002 * 109.46839 * 298.71717 * 18 3 2 20 20 C 1.53005 * 109.47121 * 178.71799 * 18 3 2 21 21 O 1.42892 * 109.47106 * 58.71594 * 18 3 2 22 22 H 1.09001 * 109.47680 * 307.14275 * 1 2 3 23 23 H 1.08998 * 109.47690 * 67.14363 * 1 2 3 24 24 H 1.09005 * 109.47595 * 187.14203 * 1 2 3 25 25 H 1.09005 * 109.47578 * 239.99572 * 2 1 3 26 26 H 1.09005 * 109.47180 * 120.00097 * 2 1 3 27 27 H 1.00898 * 110.99978 * 325.30651 * 5 3 2 28 28 H 1.08999 * 109.47304 * 329.85455 * 6 5 3 29 29 H 1.08997 * 109.46818 * 209.85566 * 6 5 3 30 30 H 0.96995 * 120.00179 * 180.02562 * 11 10 8 31 31 H 1.08995 * 117.49893 * 359.97438 * 16 7 6 32 32 H 1.08998 * 117.49620 * 145.00065 * 16 7 6 33 33 H 1.09008 * 117.50073 * 107.49950 * 17 16 7 34 34 H 1.09002 * 117.50396 * 252.51908 * 17 16 7 35 35 H 1.08994 * 109.47467 * 60.00017 * 20 18 3 36 36 H 1.09000 * 109.46885 * 180.02562 * 20 18 3 37 37 H 1.08993 * 109.46946 * 299.99693 * 20 18 3 38 38 H 0.96697 * 114.00323 * 65.16364 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6074 1.9807 0.8434 5 7 1.6483 2.1003 -1.2537 6 6 0.3297 2.7351 -1.1255 7 6 0.5019 4.1739 -0.6346 8 6 1.5529 4.3773 0.4261 9 1 2.5394 4.7196 0.1503 10 6 1.2551 4.1264 1.7488 11 7 2.1167 4.4474 2.6892 12 14 -0.3721 3.3305 2.2050 13 1 -0.1841 1.8641 2.3438 14 1 -0.8538 3.8919 3.4927 15 1 -1.3719 3.6030 1.1414 16 6 -0.7494 5.0517 -0.5668 17 6 0.2989 5.2979 -1.6536 18 6 3.5651 1.4442 0.1220 19 1 3.8548 0.9764 1.0630 20 6 4.0776 2.8854 0.0899 21 8 4.1309 0.7129 -0.9674 22 1 -0.3634 0.6205 0.8192 23 1 -0.3634 0.3991 -0.9469 24 1 -0.3634 -1.0197 0.1278 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.6626 1.4486 -2.0238 28 1 -0.2743 2.1769 -0.4102 29 1 -0.1673 2.7392 -2.0956 30 1 1.9073 4.2706 3.6196 31 1 -1.6952 4.6043 -0.8723 32 1 -0.8124 5.7763 0.2450 33 1 0.0428 5.0123 -2.6740 34 1 0.9258 6.1843 -1.5567 35 1 3.6461 3.4432 0.9209 36 1 5.1642 2.8866 0.1764 37 1 3.7880 3.3531 -0.8510 38 1 3.9803 1.1171 -1.8328 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386791034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = -43.989078 kcal Electronic energy + Delta-G solvation = -17722.943004 eV Core-core repulsion = 15179.466287 eV Total energy + Delta-G solvation = -2543.476716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09000 -38.20517 -36.07013 -34.15134 -32.42421 -31.44974 -28.22207 -27.26476 -25.12101 -23.18569 -22.80428 -21.41706 -20.60816 -18.08359 -17.46743 -16.91362 -16.46406 -16.25974 -15.71200 -15.21145 -15.03433 -14.61763 -14.22184 -14.00053 -13.59307 -13.37396 -12.97266 -12.83388 -12.72260 -12.54169 -12.21843 -12.05304 -12.00049 -11.91079 -11.73348 -11.31086 -11.04452 -10.69165 -10.53666 -10.36740 -10.00931 -8.88786 -8.07029 -6.01299 1.32673 1.43094 1.51046 2.47953 3.21889 3.30127 3.62899 3.68981 3.99985 4.15964 4.23444 4.29423 4.50218 4.54751 4.61612 4.69934 4.79505 4.81469 4.88251 4.91116 4.99293 5.05617 5.09877 5.17545 5.22334 5.32996 5.39854 5.51943 5.60652 5.61850 5.86258 6.02699 6.35766 6.64357 6.90079 7.00799 7.06803 7.58128 9.05879 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.013493 C = 0.013316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.352461 B = 2074.582566 C = 2102.301422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.143 4.143 3 C 0.060 3.940 4 H 0.077 0.923 5 N -0.657 5.657 6 C 0.092 3.908 7 C -0.017 4.017 8 C -0.428 4.428 9 H 0.055 0.945 10 C 0.034 3.966 11 N -0.945 5.945 12 Si 0.883 3.117 13 H -0.271 1.271 14 H -0.316 1.316 15 H -0.223 1.223 16 C -0.197 4.197 17 C -0.166 4.166 18 C 0.131 3.869 19 H 0.070 0.930 20 C -0.165 4.165 21 O -0.573 6.573 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.338 0.662 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.255 0.745 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.065 0.935 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 -7.424 -8.474 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C -0.051 4.051 4 H 0.096 0.904 5 N -0.287 5.287 6 C -0.038 4.038 7 C -0.019 4.019 8 C -0.466 4.466 9 H 0.073 0.927 10 C -0.162 4.162 11 N -0.587 5.587 12 Si 0.711 3.289 13 H -0.197 1.197 14 H -0.245 1.245 15 H -0.145 1.145 16 C -0.235 4.235 17 C -0.204 4.204 18 C 0.071 3.929 19 H 0.088 0.912 20 C -0.222 4.222 21 O -0.380 6.380 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.292 -7.241 -7.696 11.068 hybrid contribution -1.307 -0.329 0.724 1.530 sum -4.599 -7.570 -6.973 11.273 Atomic orbital electron populations 1.22022 0.96164 1.01809 1.01521 1.22145 0.95770 0.97735 1.02591 1.22298 0.95819 0.92329 0.94610 0.90447 1.59950 1.29250 1.34935 1.04532 1.21708 0.89241 0.93890 0.98923 1.19607 0.94770 0.89882 0.97611 1.20400 0.97196 1.40050 0.88958 0.92679 1.25285 0.97864 0.96561 0.96503 1.70000 1.37917 1.50564 1.00218 0.86882 0.84970 0.79305 0.77761 1.19738 1.24478 1.14505 1.22954 0.94001 1.05092 1.01444 1.22843 1.02136 1.01143 0.94234 1.21578 0.91311 0.91322 0.88644 0.91216 1.22444 0.97874 0.97407 1.04502 1.86391 1.79911 1.53397 1.18308 0.94910 0.91596 0.91373 0.90033 0.92936 0.84311 0.94919 0.91150 0.93618 0.89379 0.91898 0.88416 0.91374 0.90872 0.95239 0.91597 0.76834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 8.38 71.98 0.60 -3.98 16 2 C -0.14 -4.40 5.13 30.59 0.16 -4.24 16 3 C 0.06 2.17 1.39 44.91 0.06 2.23 16 4 H 0.08 3.42 3.48 -2.39 -0.01 3.41 16 5 N -0.66 -21.47 4.58 -491.58 -2.25 -23.72 16 6 C 0.09 3.18 4.59 86.30 0.40 3.58 16 7 C -0.02 -0.71 1.21 -52.91 -0.06 -0.78 16 8 C -0.43 -21.46 5.58 25.60 0.14 -21.31 16 9 H 0.06 3.11 5.89 -2.91 -0.02 3.10 16 10 C 0.03 1.78 4.12 84.65 0.35 2.13 16 11 N -0.94 -55.20 13.35 21.45 0.29 -54.91 16 12 Si 0.88 41.41 23.20 68.60 1.59 43.00 16 13 H -0.27 -12.34 5.77 99.48 0.57 -11.76 16 14 H -0.32 -15.80 7.11 99.48 0.71 -15.10 16 15 H -0.22 -9.48 5.28 99.48 0.53 -8.96 16 16 C -0.20 -7.69 7.19 30.59 0.22 -7.47 16 17 C -0.17 -6.17 9.89 30.62 0.30 -5.87 16 18 C 0.13 4.86 3.45 30.60 0.11 4.97 16 19 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 20 C -0.16 -6.89 7.68 71.98 0.55 -6.33 16 21 O -0.57 -18.40 12.70 -148.98 -1.89 -20.29 16 22 H 0.03 1.11 5.50 -2.39 -0.01 1.10 16 23 H 0.07 1.73 6.48 -2.39 -0.02 1.72 16 24 H 0.07 1.66 8.14 -2.38 -0.02 1.65 16 25 H 0.08 2.20 7.69 -2.38 -0.02 2.19 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.34 8.94 8.29 -89.70 -0.74 8.19 16 28 H 0.03 1.18 3.22 -2.39 -0.01 1.17 16 29 H 0.07 2.06 7.95 -2.39 -0.02 2.04 16 30 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.09 3.03 8.13 -2.39 -0.02 3.01 16 32 H 0.06 2.69 7.99 -2.39 -0.02 2.67 16 33 H 0.10 3.04 8.09 -2.38 -0.02 3.02 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 3.68 5.10 -2.39 -0.01 3.67 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 2.74 7.08 -2.39 -0.02 2.73 16 38 H 0.38 10.15 8.50 -74.06 -0.63 9.52 16 Total: -1.00 -57.65 273.00 -0.06 -57.71 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.62 Total: 35.28 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 2.83 Total: -37.07 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -1.97 Total: -78.63 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.89 Total: -20.29 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.59 Total: 43.00 kcal Total: -57.65 -0.06 -57.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386791034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.718 kcal (2) G-P(sol) polarization free energy of solvation -57.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds