Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47351 * 2 1 4 4 H 1.09004 * 109.46898 * 304.29005 * 3 2 1 5 5 C 1.52992 * 109.47370 * 184.28855 * 3 2 1 6 6 N 1.46896 * 109.47526 * 179.97438 * 5 3 2 7 7 C 1.48534 * 111.00252 * 287.40063 * 6 5 3 8 8 C 1.54933 * 103.22675 * 200.27618 * 7 6 5 9 9 C 1.54602 * 102.92348 * 37.41220 * 8 7 6 10 10 H 1.08998 * 110.38971 * 97.00334 * 9 8 7 11 11 C 1.50694 * 110.30540 * 219.12610 * 9 8 7 12 12 H 1.08006 * 120.00284 * 115.71856 * 11 9 8 13 13 C 1.37881 * 120.00069 * 295.71026 * 11 9 8 14 14 N 1.31513 * 119.99917 * 180.02562 * 13 11 9 15 15 Si 1.86797 * 119.99958 * 0.02562 * 13 11 9 16 16 H 1.48503 * 109.47056 * 89.99856 * 15 13 11 17 17 H 1.48493 * 109.47036 * 329.99849 * 15 13 11 18 18 H 1.48501 * 109.46986 * 209.99674 * 15 13 11 19 19 C 1.47899 * 111.00237 * 169.99924 * 6 5 3 20 20 O 1.42900 * 109.47072 * 64.28555 * 3 2 1 21 21 C 1.42896 * 114.00399 * 216.85903 * 20 3 2 22 22 H 1.09003 * 109.47223 * 174.56947 * 1 2 3 23 23 H 1.08998 * 109.47237 * 294.57068 * 1 2 3 24 24 H 1.09004 * 109.46485 * 54.57250 * 1 2 3 25 25 H 1.09000 * 109.46910 * 239.99696 * 2 1 3 26 26 H 1.09003 * 109.46698 * 120.00085 * 2 1 3 27 27 H 1.09004 * 109.47039 * 59.99765 * 5 3 2 28 28 H 1.09004 * 109.47233 * 299.99945 * 5 3 2 29 29 H 1.09006 * 110.66104 * 318.70999 * 7 6 5 30 30 H 1.08994 * 110.66844 * 81.66720 * 7 6 5 31 31 H 1.08995 * 110.72880 * 279.05063 * 8 7 6 32 32 H 1.09007 * 110.72313 * 155.76526 * 8 7 6 33 33 H 0.96994 * 119.99971 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.91830 * 26.49110 * 19 6 5 35 35 H 1.09001 * 110.08081 * 265.28853 * 19 6 5 36 36 H 1.08992 * 109.47344 * 174.16427 * 21 20 3 37 37 H 1.09011 * 109.46927 * 294.16052 * 21 20 3 38 38 H 1.08994 * 109.47220 * 54.15628 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6153 1.9780 -0.8491 5 6 3.5662 1.4438 -0.1079 6 7 4.0559 2.8287 -0.1085 7 6 3.7502 3.5009 -1.3973 8 6 4.7521 4.6823 -1.4273 9 6 6.0246 4.0726 -0.7955 10 1 6.7126 3.7400 -1.5727 11 6 6.6972 5.0798 0.1012 12 1 6.7712 4.8935 1.1625 13 6 7.2184 6.2390 -0.4332 14 7 7.8059 7.1177 0.3494 15 14 7.0901 6.5615 -2.2686 16 1 5.8286 7.2904 -2.5561 17 1 7.0925 5.2689 -2.9996 18 1 8.2471 7.3815 -2.7092 19 6 5.5279 2.8705 0.0289 20 8 1.6477 2.0864 1.2139 21 6 1.2937 3.4616 1.0542 22 1 -0.3634 -1.0231 -0.0973 23 1 -0.3633 0.4273 0.9346 24 1 -0.3632 0.5957 -0.8374 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8654 0.9526 -1.0338 28 1 3.9909 0.9082 0.7412 29 1 3.9265 2.8255 -2.2346 30 1 2.7226 3.8641 -1.4075 31 1 4.3847 5.5150 -0.8277 32 1 4.9444 4.9990 -2.4525 33 1 8.1722 7.9334 -0.0265 34 1 5.9633 1.9494 -0.3583 35 1 5.8025 2.9994 1.0759 36 1 0.9100 3.8498 1.9976 37 1 2.1745 4.0315 0.7582 38 1 0.5268 3.5524 0.2851 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397623353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -68.821157 kcal Electronic energy + Delta-G solvation = -16667.081176 eV Core-core repulsion = 14122.527660 eV Total energy + Delta-G solvation = -2544.553516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33440 -38.63069 -35.18913 -34.42277 -32.79663 -30.15964 -29.13831 -27.24559 -25.89505 -24.04637 -22.33228 -21.47743 -21.11067 -19.02042 -17.66792 -17.07821 -16.76013 -16.28763 -15.44176 -15.25091 -14.95547 -14.81753 -14.66832 -14.16877 -14.04611 -13.46733 -13.24539 -13.10989 -12.81582 -12.58710 -12.43995 -12.12030 -12.03003 -11.84730 -11.74066 -11.70077 -11.41640 -11.36385 -11.05214 -10.72867 -10.34728 -9.17675 -8.27767 -6.31041 1.33094 1.35938 1.45939 2.34925 2.99637 3.04049 3.11872 3.83415 3.96970 4.15575 4.19403 4.24725 4.34057 4.43238 4.47458 4.55798 4.58924 4.66954 4.70471 4.79456 4.85995 4.91507 5.00084 5.07011 5.11965 5.13194 5.19189 5.26140 5.34437 5.46487 5.46813 5.70785 6.07155 6.22514 6.35063 6.47954 6.74424 7.33023 8.89540 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047948 B = 0.006391 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.825531 B = 4379.964402 C = 4438.519148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.097 3.903 4 H 0.064 0.936 5 C 0.025 3.975 6 N -0.522 5.522 7 C 0.044 3.956 8 C -0.127 4.127 9 C 0.000 4.000 10 H 0.032 0.968 11 C -0.509 4.509 12 H 0.028 0.972 13 C 0.010 3.990 14 N -0.954 5.954 15 Si 0.945 3.055 16 H -0.263 1.263 17 H -0.244 1.244 18 H -0.294 1.294 19 C 0.064 3.936 20 O -0.393 6.393 21 C 0.033 3.967 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 -12.796 -6.190 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.039 3.961 4 H 0.082 0.918 5 C -0.104 4.104 6 N -0.246 5.246 7 C -0.084 4.084 8 C -0.166 4.166 9 C -0.020 4.020 10 H 0.050 0.950 11 C -0.547 4.547 12 H 0.046 0.954 13 C -0.186 4.186 14 N -0.595 5.595 15 Si 0.770 3.230 16 H -0.188 1.188 17 H -0.168 1.168 18 H -0.221 1.221 19 C -0.064 4.064 20 O -0.312 6.312 21 C -0.063 4.063 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.755 -12.488 -5.558 20.114 hybrid contribution 0.988 0.524 -1.030 1.520 sum -13.768 -11.964 -6.588 19.393 Atomic orbital electron populations 1.21669 0.94609 1.02185 1.01716 1.21649 0.97168 0.93784 1.03200 1.22247 0.91991 0.94579 0.87320 0.91793 1.22926 0.96877 0.89355 1.01204 1.64644 1.11635 1.15887 1.32435 1.23235 0.99383 0.95300 0.90453 1.22796 0.96561 0.98151 0.99060 1.19967 0.93669 0.93554 0.94788 0.94975 1.21317 1.35766 1.03506 0.94096 0.95369 1.25895 0.94261 0.95597 1.02844 1.70066 1.40653 1.10981 1.37762 0.85847 0.77765 0.79188 0.80220 1.18765 1.16799 1.22124 1.22633 0.87310 0.96711 0.99734 1.87793 1.86992 1.24246 1.32175 1.22846 0.99133 0.82469 1.01902 0.91365 0.93307 0.92652 0.89234 0.91585 0.92691 0.91194 0.92715 0.89575 0.92819 0.92311 0.92631 0.93934 0.93190 0.90051 0.93767 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.74 71.98 0.70 -1.69 16 2 C -0.12 -2.24 5.65 30.59 0.17 -2.06 16 3 C 0.10 2.34 2.26 30.59 0.07 2.41 16 4 H 0.06 1.45 6.85 -2.38 -0.02 1.43 16 5 C 0.02 0.69 4.40 86.30 0.38 1.07 16 6 N -0.52 -18.20 3.75 -883.05 -3.32 -21.51 16 7 C 0.04 1.40 5.55 86.65 0.48 1.88 16 8 C -0.13 -5.17 4.93 31.80 0.16 -5.02 16 9 C 0.00 -0.02 2.43 -10.66 -0.03 -0.05 16 10 H 0.03 1.48 7.09 -2.39 -0.02 1.47 16 11 C -0.51 -29.55 8.96 25.60 0.23 -29.32 16 12 H 0.03 1.84 7.59 -2.91 -0.02 1.82 16 13 C 0.01 0.61 5.46 84.66 0.46 1.07 16 14 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 15 Si 0.95 44.32 24.86 68.60 1.71 46.02 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.24 -10.48 6.40 99.48 0.64 -9.84 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 19 C 0.06 2.60 6.31 86.45 0.55 3.15 16 20 O -0.39 -11.42 9.87 -148.98 -1.47 -12.89 16 21 C 0.03 0.88 10.61 113.37 1.20 2.09 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 0.93 7.95 -2.39 -0.02 0.91 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.33 7.83 -2.39 -0.02 1.31 16 28 H 0.07 2.03 8.08 -2.38 -0.02 2.01 16 29 H 0.05 1.54 7.81 -2.38 -0.02 1.52 16 30 H 0.09 2.43 7.29 -2.39 -0.02 2.41 16 31 H 0.05 2.42 7.86 -2.39 -0.02 2.40 16 32 H 0.06 2.23 6.17 -2.38 -0.01 2.22 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.04 1.54 7.77 -2.39 -0.02 1.52 16 35 H 0.05 2.30 7.39 -2.39 -0.02 2.28 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.41 6.04 -2.38 -0.01 1.39 16 38 H 0.05 1.05 7.96 -2.39 -0.02 1.03 16 Total: -1.00 -66.57 292.08 2.53 -64.05 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.93 Total: 11.14 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 4.37 Total: -26.46 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.02 Total: -81.86 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -1.47 Total: -12.89 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.71 Total: 46.02 kcal Total: -66.57 2.53 -64.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397623353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.774 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds