Wall clock time and date at job start Mon Mar 30 2020 03:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47436 * 2 1 4 4 N 1.46499 * 109.47180 * 120.00494 * 2 1 3 5 5 C 1.36936 * 120.00279 * 113.74981 * 4 2 1 6 6 H 1.08003 * 119.99280 * 207.20245 * 5 4 2 7 7 C 1.38810 * 120.00144 * 27.19841 * 5 4 2 8 8 N 1.31622 * 119.99545 * 214.55619 * 7 5 4 9 9 Si 1.86795 * 119.99902 * 34.55888 * 7 5 4 10 10 H 1.48503 * 109.47124 * 269.99807 * 9 7 5 11 11 H 1.48495 * 109.47356 * 29.99758 * 9 7 5 12 12 H 1.48496 * 109.46899 * 150.00184 * 9 7 5 13 13 C 1.46510 * 119.99546 * 293.74595 * 4 2 1 14 14 C 1.53005 * 109.46735 * 269.99867 * 13 4 2 15 15 C 1.53008 * 109.46741 * 179.97438 * 14 13 4 16 16 H 1.08998 * 110.80024 * 305.70850 * 15 14 13 17 17 C 1.54803 * 110.90556 * 182.07268 * 15 14 13 18 18 C 1.54102 * 104.18645 * 220.92144 * 17 15 14 19 19 O 1.43737 * 107.29316 * 357.97514 * 18 17 15 20 20 C 1.44413 * 107.00517 * 26.48490 * 19 18 17 21 21 H 1.09002 * 109.46438 * 300.00023 * 1 2 3 22 22 H 1.08998 * 109.46912 * 59.99699 * 1 2 3 23 23 H 1.08996 * 109.47210 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46928 * 240.00179 * 2 1 3 25 25 H 1.09002 * 109.47242 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47316 * 300.00053 * 3 2 1 27 27 H 1.08995 * 109.47118 * 59.99884 * 3 2 1 28 28 H 0.96992 * 120.00272 * 354.86093 * 8 7 5 29 29 H 1.08997 * 109.46852 * 29.99922 * 13 4 2 30 30 H 1.08996 * 109.46850 * 150.00475 * 13 4 2 31 31 H 1.08996 * 109.47414 * 300.00211 * 14 13 4 32 32 H 1.08996 * 109.46955 * 60.00672 * 14 13 4 33 33 H 1.08998 * 110.48960 * 339.60052 * 17 15 14 34 34 H 1.09003 * 110.48393 * 102.11415 * 17 15 14 35 35 H 1.09004 * 109.87641 * 117.39737 * 18 17 15 36 36 H 1.09001 * 109.87951 * 238.54437 * 18 17 15 37 37 H 1.08998 * 110.65661 * 201.48524 * 20 19 18 38 38 H 1.09001 * 110.59936 * 78.47048 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.6969 -1.8739 1.0745 6 1 2.6776 -2.5926 1.8804 7 6 3.4093 -2.1495 -0.0845 8 7 3.4805 -3.3841 -0.5353 9 14 4.2669 -0.7683 -1.0043 10 1 3.3381 -0.1911 -2.0090 11 1 4.6751 0.2877 -0.0434 12 1 5.4694 -1.3035 -1.6919 13 6 1.7808 -0.1154 2.5224 14 6 2.9430 0.8080 2.8934 15 6 2.6946 1.4093 4.2782 16 1 1.7228 1.9012 4.3180 17 6 3.8272 2.3909 4.6655 18 6 4.0901 2.0956 6.1549 19 8 3.1541 1.0834 6.5615 20 6 2.8116 0.3260 5.3806 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 3.0992 -4.1115 -0.0193 29 1 0.8526 0.4559 2.5096 30 1 1.7044 -0.9165 3.2575 31 1 3.8712 0.2367 2.9060 32 1 3.0194 1.6091 2.1583 33 1 4.7213 2.1944 4.0739 34 1 3.5008 3.4222 4.5307 35 1 5.1094 1.7322 6.2864 36 1 3.9379 2.9997 6.7445 37 1 1.8601 -0.1881 5.5161 38 1 3.6019 -0.3845 5.1382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401003267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:16 Heat of formation + Delta-G solvation = -56.655060 kcal Electronic energy + Delta-G solvation = -16860.057238 eV Core-core repulsion = 14316.031283 eV Total energy + Delta-G solvation = -2544.025954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45288 -38.78493 -35.04360 -34.24505 -32.27153 -30.74684 -28.64491 -27.97105 -25.44889 -23.96630 -22.91201 -21.32479 -21.13445 -19.19881 -17.53477 -17.18087 -16.69219 -16.27766 -15.96358 -15.36802 -14.87866 -14.82396 -14.42537 -14.01290 -13.85325 -13.63153 -13.27788 -13.05130 -12.73355 -12.61486 -12.41373 -12.27303 -12.12261 -11.79469 -11.56538 -11.51118 -11.48017 -11.22034 -11.00958 -10.64603 -10.38194 -9.09843 -8.46322 -5.39472 1.41654 1.53856 1.72257 2.53475 2.98823 3.02485 3.43442 3.65079 3.86595 4.03253 4.18657 4.23051 4.35130 4.40660 4.44439 4.59092 4.66942 4.71417 4.79979 4.85010 4.86584 4.89210 4.91349 4.94379 5.02196 5.10374 5.16566 5.20454 5.33920 5.41659 5.55109 5.59874 5.88308 5.90495 6.33022 6.99492 7.73888 8.18519 8.84071 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028904 B = 0.008137 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.487448 B = 3440.295797 C = 3619.240119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 C -0.169 4.169 4 N -0.609 5.609 5 C -0.338 4.338 6 H 0.025 0.975 7 C -0.062 4.062 8 N -0.945 5.945 9 Si 1.087 2.913 10 H -0.268 1.268 11 H -0.261 1.261 12 H -0.313 1.313 13 C 0.148 3.852 14 C -0.123 4.123 15 C -0.111 4.111 16 H 0.096 0.904 17 C -0.149 4.149 18 C 0.042 3.958 19 O -0.403 6.403 20 C 0.050 3.950 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.029 0.971 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.249 0.751 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 15.225 7.581 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.032 3.968 3 C -0.227 4.227 4 N -0.331 5.331 5 C -0.468 4.468 6 H 0.043 0.957 7 C -0.259 4.259 8 N -0.586 5.586 9 Si 0.914 3.086 10 H -0.194 1.194 11 H -0.187 1.187 12 H -0.242 1.242 13 C 0.023 3.977 14 C -0.163 4.163 15 C -0.130 4.130 16 H 0.114 0.886 17 C -0.187 4.187 18 C -0.035 4.035 19 O -0.323 6.323 20 C -0.027 4.027 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.563 15.524 6.474 16.892 hybrid contribution -0.484 -1.334 1.182 1.847 sum -2.046 14.190 7.656 16.253 Atomic orbital electron populations 1.22123 0.96256 1.00422 1.02000 1.20856 0.93960 0.92728 0.89253 1.22515 1.00787 0.96449 1.02974 1.44359 1.63478 1.23581 1.01716 1.19880 1.28081 0.94048 1.04833 0.95716 1.27129 0.98049 1.02160 0.98533 1.71057 1.50773 1.01250 1.35544 0.83628 0.75663 0.73707 0.75615 1.19416 1.18659 1.24164 1.20948 0.96193 0.94645 0.85955 1.22214 0.99620 0.99140 0.95293 1.22679 1.00272 0.95730 0.94340 0.88620 1.23005 0.98923 1.00975 0.95751 1.23315 0.92830 0.91939 0.95369 1.88804 1.63770 1.47372 1.32307 1.23657 1.00551 0.94223 0.84236 0.91823 0.91135 0.95207 0.93509 0.93768 0.90749 0.90639 0.94175 0.91816 0.95171 0.94572 0.91004 0.91019 0.88566 0.92431 0.88052 0.88783 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.27 71.98 0.67 -4.46 16 2 C 0.14 5.62 2.19 44.99 0.10 5.72 16 3 C -0.17 -5.51 7.32 71.98 0.53 -4.98 16 4 N -0.61 -27.96 2.16 -678.01 -1.46 -29.42 16 5 C -0.34 -19.20 9.74 84.03 0.82 -18.38 16 6 H 0.03 1.56 8.06 -2.91 -0.02 1.54 16 7 C -0.06 -3.64 4.93 84.86 0.42 -3.23 16 8 N -0.94 -60.34 13.70 21.65 0.30 -60.04 16 9 Si 1.09 52.68 24.18 68.60 1.66 54.34 16 10 H -0.27 -11.87 6.48 99.48 0.64 -11.23 16 11 H -0.26 -11.58 6.24 99.48 0.62 -10.96 16 12 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 13 C 0.15 5.51 4.80 86.38 0.41 5.93 16 14 C -0.12 -4.00 4.64 30.60 0.14 -3.86 16 15 C -0.11 -2.86 3.12 -9.49 -0.03 -2.89 16 16 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.15 -3.22 6.60 31.58 0.21 -3.01 16 18 C 0.04 0.92 7.70 72.35 0.56 1.47 16 19 O -0.40 -11.45 11.52 -148.98 -1.72 -13.17 16 20 C 0.05 1.41 6.49 72.67 0.47 1.88 16 21 H 0.06 1.92 6.93 -2.39 -0.02 1.90 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 2.21 4.24 -2.39 -0.01 2.20 16 25 H 0.04 1.55 5.12 -2.39 -0.01 1.54 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.12 6.39 -2.39 -0.02 2.11 16 28 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 29 H 0.06 2.05 6.72 -2.39 -0.02 2.04 16 30 H 0.03 1.19 7.48 -2.39 -0.02 1.18 16 31 H 0.04 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.07 2.24 5.40 -2.39 -0.01 2.23 16 33 H 0.07 1.62 7.86 -2.39 -0.02 1.60 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 38 H 0.05 1.46 7.98 -2.39 -0.02 1.44 16 Total: -1.00 -66.37 286.24 3.90 -62.48 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.83 Total: 11.63 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.29 Total: -25.81 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -1.16 Total: -89.46 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.72 Total: -13.17 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 1.66 Total: 54.34 kcal Total: -66.37 3.90 -62.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401003267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.820 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds