Wall clock time and date at job start Mon Mar 30 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 H 1.09002 * 109.47252 * 305.50136 * 3 2 1 5 5 C 1.50700 * 109.47173 * 185.50470 * 3 2 1 6 6 H 1.08001 * 119.99945 * 242.82789 * 5 3 2 7 7 C 1.37882 * 120.00115 * 62.81802 * 5 3 2 8 8 N 1.31511 * 119.99837 * 194.13652 * 7 5 3 9 9 Si 1.86794 * 119.99637 * 14.13780 * 7 5 3 10 10 H 1.48502 * 109.47062 * 92.57932 * 9 7 5 11 11 H 1.48501 * 109.47133 * 212.57621 * 9 7 5 12 12 H 1.48497 * 109.47459 * 332.58080 * 9 7 5 13 13 N 1.46896 * 109.47236 * 65.50209 * 3 2 1 14 14 C 1.46897 * 111.00421 * 253.03904 * 13 3 2 15 15 H 1.08997 * 110.98537 * 30.36199 * 14 13 3 16 16 C 1.54945 * 111.12448 * 266.16905 * 14 13 3 17 17 O 1.43697 * 105.11025 * 205.67276 * 16 14 13 18 18 C 1.43231 * 109.99632 * 24.35827 * 17 16 14 19 19 H 1.09002 * 109.83204 * 238.81731 * 18 17 16 20 20 C 1.53001 * 109.90565 * 117.88301 * 18 17 16 21 21 C 1.54386 * 107.58680 * 358.33084 * 18 17 16 22 22 H 1.09001 * 111.01946 * 220.37002 * 21 18 17 23 23 C 1.53005 * 110.84946 * 96.83602 * 21 18 17 24 24 H 1.09002 * 109.47486 * 178.87573 * 1 2 3 25 25 H 1.09004 * 109.47459 * 298.88121 * 1 2 3 26 26 H 1.09000 * 109.47005 * 58.87913 * 1 2 3 27 27 H 1.08998 * 109.46897 * 239.99651 * 2 1 3 28 28 H 1.09004 * 109.46622 * 120.00003 * 2 1 3 29 29 H 0.96998 * 119.99517 * 180.02562 * 8 7 5 30 30 H 1.00908 * 111.00253 * 129.07878 * 13 3 2 31 31 H 1.09000 * 110.31026 * 324.54559 * 16 14 13 32 32 H 1.09000 * 110.31569 * 86.71485 * 16 14 13 33 33 H 1.08995 * 109.47417 * 301.81860 * 20 18 17 34 34 H 1.09000 * 109.46897 * 61.82895 * 20 18 17 35 35 H 1.09011 * 109.47064 * 181.82242 * 20 18 17 36 36 H 1.09000 * 109.46294 * 307.16512 * 23 21 18 37 37 H 1.08995 * 109.46908 * 67.16641 * 23 21 18 38 38 H 1.08996 * 109.46745 * 187.16953 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 -0.8366 5 6 3.5408 1.4446 -0.1363 6 1 4.1545 1.8457 0.6568 7 6 4.1306 0.9344 -1.2734 8 7 5.4203 0.6775 -1.2865 9 14 3.0976 0.6081 -2.7951 10 1 3.1293 1.8004 -3.6799 11 1 3.6461 -0.5638 -3.5239 12 1 1.6961 0.3285 -2.3915 13 7 1.6618 2.0956 1.2603 14 6 0.5788 3.0647 1.0467 15 1 -0.0629 2.7574 0.2210 16 6 1.1420 4.4896 0.8157 17 8 0.0915 5.3791 1.2284 18 6 -0.7653 4.7219 2.1694 19 1 -1.7865 4.7026 1.7889 20 6 -0.7252 5.4558 3.5113 21 6 -0.2447 3.2791 2.3458 22 1 -1.0704 2.5699 2.4033 23 6 0.6502 3.1705 3.5821 24 1 -0.3634 -1.0275 -0.0202 25 1 -0.3634 0.4964 0.8999 26 1 -0.3633 0.5311 -0.8798 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 5.8352 0.3189 -2.0866 30 1 2.4601 2.5350 1.6936 31 1 2.0321 4.6479 1.4245 32 1 1.3727 4.6389 -0.2391 33 1 0.3005 5.4854 3.8788 34 1 -1.0938 6.4731 3.3801 35 1 -1.3540 4.9315 4.2311 36 1 1.4315 3.9289 3.5327 37 1 0.0506 3.3243 4.4792 38 1 1.1059 2.1809 3.6148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405639064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:09 Heat of formation + Delta-G solvation = -53.011021 kcal Electronic energy + Delta-G solvation = -17005.238425 eV Core-core repulsion = 14461.370488 eV Total energy + Delta-G solvation = -2543.867937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80619 -36.25336 -33.45581 -32.44394 -31.65377 -29.24704 -27.25692 -25.94061 -25.32234 -22.54948 -20.79102 -19.81082 -19.44617 -17.14069 -16.48693 -15.57627 -15.13203 -14.49208 -14.04759 -13.78740 -13.11765 -12.93182 -12.76762 -12.73394 -12.66647 -12.53344 -11.95850 -11.71467 -11.61379 -11.20922 -10.94886 -10.75409 -10.60968 -10.46968 -10.40398 -10.15351 -9.80856 -9.35018 -9.27135 -9.16519 -8.49515 -7.51977 -6.18025 -4.14783 3.23844 3.33991 3.37068 4.03318 4.35987 4.78899 4.87052 5.08080 5.13147 5.27283 5.43349 5.45720 5.49527 5.64743 5.75909 5.91577 5.95925 6.04153 6.06455 6.10087 6.19512 6.21704 6.25561 6.27470 6.45213 6.63277 6.67733 6.74601 7.00472 7.02991 7.27534 7.40391 7.57054 7.92408 8.26617 8.52166 8.88990 9.47371 10.94723 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.007916 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.055072 B = 3536.244671 C = 3686.283497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.190 3.810 4 H 0.007 0.993 5 C -0.538 4.538 6 H 0.075 0.925 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.661 5.661 14 C 0.064 3.936 15 H 0.086 0.914 16 C 0.025 3.975 17 O -0.384 6.384 18 C 0.076 3.924 19 H 0.072 0.928 20 C -0.160 4.160 21 C -0.113 4.113 22 H 0.083 0.917 23 C -0.136 4.136 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.264 0.736 30 H 0.343 0.657 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 4.707 6.283 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.081 3.919 4 H 0.025 0.975 5 C -0.575 4.575 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.526 5.526 9 Si 0.688 3.312 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.293 5.293 14 C -0.048 4.048 15 H 0.104 0.896 16 C -0.054 4.054 17 O -0.303 6.303 18 C 0.018 3.982 19 H 0.090 0.910 20 C -0.218 4.218 21 C -0.132 4.132 22 H 0.101 0.899 23 C -0.193 4.193 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.022 4.326 6.299 14.245 hybrid contribution 0.170 0.304 -1.389 1.432 sum -11.852 4.631 4.911 13.639 Atomic orbital electron populations 1.21817 0.98577 0.99472 1.00565 1.21901 0.92787 0.99289 1.00869 1.19516 0.95369 0.90895 0.86092 0.97501 1.21285 0.89451 1.42165 1.04640 0.90686 1.24903 0.94743 0.94088 0.98726 1.69971 1.10951 1.42954 1.28763 0.87265 0.82466 0.77978 0.83444 1.20850 1.21290 1.17066 1.60550 1.11680 1.30199 1.26851 1.23318 0.94914 0.90469 0.96134 0.89623 1.24207 0.90502 0.90288 1.00370 1.88376 1.41256 1.39262 1.61421 1.22741 0.94122 0.91713 0.89626 0.91014 1.22186 1.02676 1.00300 0.96597 1.22651 0.98807 0.95199 0.96571 0.89868 1.21697 0.98941 1.03152 0.95486 0.94703 0.92615 0.94553 0.93049 0.92325 0.92599 0.83712 0.92127 0.89944 0.91735 0.92744 0.91802 0.93062 0.93308 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.13 37.16 0.34 -2.30 16 2 C -0.11 -2.35 4.81 -26.73 -0.13 -2.48 16 3 C 0.19 4.24 1.65 -68.87 -0.11 4.13 16 4 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 5 C -0.54 -14.35 9.06 -34.44 -0.31 -14.67 16 6 H 0.08 2.16 7.62 -52.49 -0.40 1.76 16 7 C 0.08 2.20 5.34 -17.82 -0.10 2.10 16 8 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 9 Si 0.86 20.73 25.74 -169.99 -4.37 16.36 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.25 -5.57 5.32 56.52 0.30 -5.27 16 13 N -0.66 -12.48 4.70 -98.62 -0.46 -12.95 16 14 C 0.06 1.05 2.31 -65.47 -0.15 0.90 16 15 H 0.09 1.48 7.08 -51.93 -0.37 1.11 16 16 C 0.02 0.41 7.10 38.18 0.27 0.68 16 17 O -0.38 -6.27 11.02 -35.23 -0.39 -6.66 16 18 C 0.08 1.02 4.09 -26.00 -0.11 0.91 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.16 -1.82 8.40 37.16 0.31 -1.51 16 21 C -0.11 -1.55 3.53 -88.67 -0.31 -1.86 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 23 C -0.14 -1.77 7.19 37.16 0.27 -1.50 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.95 7.25 -51.93 -0.38 0.57 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.16 4.58 -51.93 -0.24 0.93 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.34 6.67 6.95 -39.29 -0.27 6.40 16 31 H 0.06 1.01 7.44 -51.93 -0.39 0.63 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 0.76 6.49 -51.93 -0.34 0.42 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.61 7.73 -51.92 -0.40 0.21 16 36 H 0.05 0.69 6.76 -51.93 -0.35 0.34 16 37 H 0.05 0.54 7.14 -51.93 -0.37 0.17 16 38 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 LS Contribution 285.54 15.07 4.30 4.30 Total: -1.00 -28.22 285.54 -6.59 -34.81 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.40 Total: 5.44 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.03 Total: -15.60 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.31 Total: -38.65 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.39 Total: -6.66 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.37 Total: 16.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.22 -6.59 -34.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405639064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.204 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds