Wall clock time and date at job start Mon Mar 30 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 H 1.09002 * 109.47252 * 305.50136 * 3 2 1 5 5 C 1.50700 * 109.47173 * 185.50470 * 3 2 1 6 6 H 1.08001 * 119.99945 * 242.82789 * 5 3 2 7 7 C 1.37882 * 120.00115 * 62.81802 * 5 3 2 8 8 N 1.31511 * 119.99837 * 194.13652 * 7 5 3 9 9 Si 1.86794 * 119.99637 * 14.13780 * 7 5 3 10 10 H 1.48502 * 109.47062 * 92.57932 * 9 7 5 11 11 H 1.48501 * 109.47133 * 212.57621 * 9 7 5 12 12 H 1.48497 * 109.47459 * 332.58080 * 9 7 5 13 13 N 1.46896 * 109.47236 * 65.50209 * 3 2 1 14 14 C 1.46897 * 111.00421 * 253.03904 * 13 3 2 15 15 H 1.08997 * 110.98537 * 30.36199 * 14 13 3 16 16 C 1.54945 * 111.12448 * 266.16905 * 14 13 3 17 17 O 1.43697 * 105.11025 * 205.67276 * 16 14 13 18 18 C 1.43231 * 109.99632 * 24.35827 * 17 16 14 19 19 H 1.09002 * 109.83204 * 238.81731 * 18 17 16 20 20 C 1.53001 * 109.90565 * 117.88301 * 18 17 16 21 21 C 1.54386 * 107.58680 * 358.33084 * 18 17 16 22 22 H 1.09001 * 111.01946 * 220.37002 * 21 18 17 23 23 C 1.53005 * 110.84946 * 96.83602 * 21 18 17 24 24 H 1.09002 * 109.47486 * 178.87573 * 1 2 3 25 25 H 1.09004 * 109.47459 * 298.88121 * 1 2 3 26 26 H 1.09000 * 109.47005 * 58.87913 * 1 2 3 27 27 H 1.08998 * 109.46897 * 239.99651 * 2 1 3 28 28 H 1.09004 * 109.46622 * 120.00003 * 2 1 3 29 29 H 0.96998 * 119.99517 * 180.02562 * 8 7 5 30 30 H 1.00908 * 111.00253 * 129.07878 * 13 3 2 31 31 H 1.09000 * 110.31026 * 324.54559 * 16 14 13 32 32 H 1.09000 * 110.31569 * 86.71485 * 16 14 13 33 33 H 1.08995 * 109.47417 * 301.81860 * 20 18 17 34 34 H 1.09000 * 109.46897 * 61.82895 * 20 18 17 35 35 H 1.09011 * 109.47064 * 181.82242 * 20 18 17 36 36 H 1.09000 * 109.46294 * 307.16512 * 23 21 18 37 37 H 1.08995 * 109.46908 * 67.16641 * 23 21 18 38 38 H 1.08996 * 109.46745 * 187.16953 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 -0.8366 5 6 3.5408 1.4446 -0.1363 6 1 4.1545 1.8457 0.6568 7 6 4.1306 0.9344 -1.2734 8 7 5.4203 0.6775 -1.2865 9 14 3.0976 0.6081 -2.7951 10 1 3.1293 1.8004 -3.6799 11 1 3.6461 -0.5638 -3.5239 12 1 1.6961 0.3285 -2.3915 13 7 1.6618 2.0956 1.2603 14 6 0.5788 3.0647 1.0467 15 1 -0.0629 2.7574 0.2210 16 6 1.1420 4.4896 0.8157 17 8 0.0915 5.3791 1.2284 18 6 -0.7653 4.7219 2.1694 19 1 -1.7865 4.7026 1.7889 20 6 -0.7252 5.4558 3.5113 21 6 -0.2447 3.2791 2.3458 22 1 -1.0704 2.5699 2.4033 23 6 0.6502 3.1705 3.5821 24 1 -0.3634 -1.0275 -0.0202 25 1 -0.3634 0.4964 0.8999 26 1 -0.3633 0.5311 -0.8798 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 5.8352 0.3189 -2.0866 30 1 2.4601 2.5350 1.6936 31 1 2.0321 4.6479 1.4245 32 1 1.3727 4.6389 -0.2391 33 1 0.3005 5.4854 3.8788 34 1 -1.0938 6.4731 3.3801 35 1 -1.3540 4.9315 4.2311 36 1 1.4315 3.9289 3.5327 37 1 0.0506 3.3243 4.4792 38 1 1.1059 2.1809 3.6148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405639064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:09 Heat of formation + Delta-G solvation = -71.974417 kcal Electronic energy + Delta-G solvation = -17006.060740 eV Core-core repulsion = 14461.370488 eV Total energy + Delta-G solvation = -2544.690252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04002 -37.88555 -34.86265 -34.13732 -33.20243 -30.62861 -28.69597 -27.48153 -26.43100 -24.32739 -22.11666 -21.46528 -20.62842 -19.01545 -17.84929 -17.11309 -16.62703 -15.84911 -15.55626 -15.27678 -14.81153 -14.27488 -14.21615 -14.19402 -13.84663 -13.72847 -13.58641 -13.26634 -12.76536 -12.63082 -12.61393 -12.28522 -12.06502 -11.90233 -11.60885 -11.54655 -11.30408 -11.15694 -11.04959 -10.57730 -10.48550 -9.09331 -8.33631 -6.33790 1.32018 1.37110 1.46110 2.33045 2.81191 3.01830 3.55031 3.65650 3.87683 4.05412 4.19307 4.22489 4.46357 4.49521 4.54869 4.62407 4.66292 4.71235 4.77946 4.87966 4.93845 4.96024 5.03343 5.17240 5.22656 5.28865 5.32260 5.38066 5.43914 5.55823 5.61587 5.80002 6.00845 6.10525 6.45425 6.64082 6.84307 7.32429 8.82583 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.007916 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.055072 B = 3536.244671 C = 3686.283497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.196 3.804 4 H 0.005 0.995 5 C -0.538 4.538 6 H 0.038 0.962 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.922 3.078 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.220 1.220 13 N -0.654 5.654 14 C 0.061 3.939 15 H 0.084 0.916 16 C 0.028 3.972 17 O -0.398 6.398 18 C 0.070 3.930 19 H 0.088 0.912 20 C -0.157 4.157 21 C -0.104 4.104 22 H 0.100 0.900 23 C -0.132 4.132 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.265 0.735 30 H 0.337 0.663 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 4.699 6.661 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.087 3.913 4 H 0.023 0.977 5 C -0.576 4.576 6 H 0.057 0.943 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.746 3.254 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.143 1.143 13 N -0.284 5.284 14 C -0.051 4.051 15 H 0.102 0.898 16 C -0.050 4.050 17 O -0.318 6.318 18 C 0.012 3.988 19 H 0.105 0.895 20 C -0.214 4.214 21 C -0.123 4.123 22 H 0.118 0.882 23 C -0.189 4.189 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.008 4.329 6.698 16.996 hybrid contribution 1.123 0.371 -1.404 1.835 sum -13.886 4.700 5.295 15.587 Atomic orbital electron populations 1.21715 0.95342 1.01111 1.01334 1.21817 0.95644 0.97749 0.99740 1.19375 0.92218 0.92220 0.87511 0.97715 1.21624 0.91864 1.40705 1.03384 0.94337 1.25735 0.95747 0.94226 1.01915 1.70106 1.13023 1.45037 1.29718 0.86298 0.82198 0.77605 0.79309 1.20823 1.21368 1.14260 1.60564 1.11900 1.31083 1.24856 1.23388 0.94249 0.89494 0.97970 0.89752 1.24054 0.90706 0.90717 0.99562 1.88365 1.41378 1.39660 1.62362 1.23000 0.94187 0.91380 0.90192 0.89453 1.22170 1.02809 1.00620 0.95797 1.22635 0.98724 0.95923 0.94983 0.88194 1.21664 0.98923 1.01937 0.96349 0.92668 0.91570 0.94051 0.94399 0.93368 0.92608 0.84365 0.92826 0.91185 0.92469 0.92388 0.89444 0.94017 0.90795 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.13 71.98 0.66 -3.81 16 2 C -0.11 -4.56 4.81 30.59 0.15 -4.42 16 3 C 0.20 8.64 1.65 44.17 0.07 8.71 16 4 H 0.01 0.23 6.20 -2.39 -0.01 0.22 16 5 C -0.54 -29.40 9.06 25.60 0.23 -29.17 16 6 H 0.04 2.33 7.62 -2.91 -0.02 2.31 16 7 C 0.02 1.28 5.34 84.66 0.45 1.73 16 8 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 9 Si 0.92 42.78 25.74 68.60 1.77 44.55 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.22 -9.19 5.32 99.48 0.53 -8.66 16 13 N -0.65 -24.26 4.70 -465.91 -2.19 -26.45 16 14 C 0.06 1.90 2.31 46.37 0.11 2.01 16 15 H 0.08 2.70 7.08 -2.39 -0.02 2.69 16 16 C 0.03 0.92 7.10 72.65 0.52 1.44 16 17 O -0.40 -12.39 11.02 -148.98 -1.64 -14.03 16 18 C 0.07 1.67 4.09 31.07 0.13 1.80 16 19 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 20 C -0.16 -3.08 8.40 71.98 0.60 -2.47 16 21 C -0.10 -2.55 3.53 -9.53 -0.03 -2.59 16 22 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 23 C -0.13 -3.13 7.19 71.98 0.52 -2.62 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 2.00 7.25 -2.38 -0.02 1.98 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.64 4.58 -2.39 -0.01 1.63 16 28 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 30 H 0.34 13.33 6.95 -89.69 -0.62 12.71 16 31 H 0.05 1.81 7.44 -2.39 -0.02 1.80 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 1.21 6.49 -2.39 -0.02 1.20 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.31 7.73 -2.38 -0.02 1.29 16 36 H 0.04 1.06 6.76 -2.39 -0.02 1.05 16 37 H 0.07 1.39 7.14 -2.39 -0.02 1.38 16 38 H 0.06 1.65 7.44 -2.39 -0.02 1.63 16 Total: -1.00 -61.36 285.54 1.86 -59.50 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.23 Total: 23.21 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.40 Total: -29.39 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.89 Total: -83.84 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.64 Total: -14.03 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.77 Total: 44.55 kcal Total: -61.36 1.86 -59.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405639064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.474 kcal (2) G-P(sol) polarization free energy of solvation -61.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds