Wall clock time and date at job start Mon Mar 30 2020 02:46:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47264 * 2 1
4 4 H 1.09002 * 109.47252 * 305.50136 * 3 2 1
5 5 C 1.50700 * 109.47173 * 185.50470 * 3 2 1
6 6 H 1.08001 * 119.99945 * 242.82789 * 5 3 2
7 7 C 1.37882 * 120.00115 * 62.81802 * 5 3 2
8 8 N 1.31511 * 119.99837 * 194.13652 * 7 5 3
9 9 Si 1.86794 * 119.99637 * 14.13780 * 7 5 3
10 10 H 1.48502 * 109.47062 * 92.57932 * 9 7 5
11 11 H 1.48501 * 109.47133 * 212.57621 * 9 7 5
12 12 H 1.48497 * 109.47459 * 332.58080 * 9 7 5
13 13 N 1.46896 * 109.47236 * 65.50209 * 3 2 1
14 14 C 1.46897 * 111.00421 * 253.03904 * 13 3 2
15 15 H 1.08997 * 110.98537 * 30.36199 * 14 13 3
16 16 C 1.54945 * 111.12448 * 266.16905 * 14 13 3
17 17 O 1.43697 * 105.11025 * 205.67276 * 16 14 13
18 18 C 1.43231 * 109.99632 * 24.35827 * 17 16 14
19 19 H 1.09002 * 109.83204 * 238.81731 * 18 17 16
20 20 C 1.53001 * 109.90565 * 117.88301 * 18 17 16
21 21 C 1.54386 * 107.58680 * 358.33084 * 18 17 16
22 22 H 1.09001 * 111.01946 * 220.37002 * 21 18 17
23 23 C 1.53005 * 110.84946 * 96.83602 * 21 18 17
24 24 H 1.09002 * 109.47486 * 178.87573 * 1 2 3
25 25 H 1.09004 * 109.47459 * 298.88121 * 1 2 3
26 26 H 1.09000 * 109.47005 * 58.87913 * 1 2 3
27 27 H 1.08998 * 109.46897 * 239.99651 * 2 1 3
28 28 H 1.09004 * 109.46622 * 120.00003 * 2 1 3
29 29 H 0.96998 * 119.99517 * 180.02562 * 8 7 5
30 30 H 1.00908 * 111.00253 * 129.07878 * 13 3 2
31 31 H 1.09000 * 110.31026 * 324.54559 * 16 14 13
32 32 H 1.09000 * 110.31569 * 86.71485 * 16 14 13
33 33 H 1.08995 * 109.47417 * 301.81860 * 20 18 17
34 34 H 1.09000 * 109.46897 * 61.82895 * 20 18 17
35 35 H 1.09011 * 109.47064 * 181.82242 * 20 18 17
36 36 H 1.09000 * 109.46294 * 307.16512 * 23 21 18
37 37 H 1.08995 * 109.46908 * 67.16641 * 23 21 18
38 38 H 1.08996 * 109.46745 * 187.16953 * 23 21 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5985 1.9840 -0.8366
5 6 3.5408 1.4446 -0.1363
6 1 4.1545 1.8457 0.6568
7 6 4.1306 0.9344 -1.2734
8 7 5.4203 0.6775 -1.2865
9 14 3.0976 0.6081 -2.7951
10 1 3.1293 1.8004 -3.6799
11 1 3.6461 -0.5638 -3.5239
12 1 1.6961 0.3285 -2.3915
13 7 1.6618 2.0956 1.2603
14 6 0.5788 3.0647 1.0467
15 1 -0.0629 2.7574 0.2210
16 6 1.1420 4.4896 0.8157
17 8 0.0915 5.3791 1.2284
18 6 -0.7653 4.7219 2.1694
19 1 -1.7865 4.7026 1.7889
20 6 -0.7252 5.4558 3.5113
21 6 -0.2447 3.2791 2.3458
22 1 -1.0704 2.5699 2.4033
23 6 0.6502 3.1705 3.5821
24 1 -0.3634 -1.0275 -0.0202
25 1 -0.3634 0.4964 0.8999
26 1 -0.3633 0.5311 -0.8798
27 1 1.8933 -0.5139 -0.8899
28 1 1.8932 -0.5139 0.8900
29 1 5.8352 0.3189 -2.0866
30 1 2.4601 2.5350 1.6936
31 1 2.0321 4.6479 1.4245
32 1 1.3727 4.6389 -0.2391
33 1 0.3005 5.4854 3.8788
34 1 -1.0938 6.4731 3.3801
35 1 -1.3540 4.9315 4.2311
36 1 1.4315 3.9289 3.5327
37 1 0.0506 3.3243 4.4792
38 1 1.1059 2.1809 3.6148
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000405639064.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:09
Heat of formation + Delta-G solvation = -71.974417 kcal
Electronic energy + Delta-G solvation = -17006.060740 eV
Core-core repulsion = 14461.370488 eV
Total energy + Delta-G solvation = -2544.690252 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.04002 -37.88555 -34.86265 -34.13732 -33.20243 -30.62861 -28.69597 -27.48153
-26.43100 -24.32739 -22.11666 -21.46528 -20.62842 -19.01545 -17.84929 -17.11309
-16.62703 -15.84911 -15.55626 -15.27678 -14.81153 -14.27488 -14.21615 -14.19402
-13.84663 -13.72847 -13.58641 -13.26634 -12.76536 -12.63082 -12.61393 -12.28522
-12.06502 -11.90233 -11.60885 -11.54655 -11.30408 -11.15694 -11.04959 -10.57730
-10.48550 -9.09331 -8.33631 -6.33790 1.32018 1.37110 1.46110 2.33045
2.81191 3.01830 3.55031 3.65650 3.87683 4.05412 4.19307 4.22489
4.46357 4.49521 4.54869 4.62407 4.66292 4.71235 4.77946 4.87966
4.93845 4.96024 5.03343 5.17240 5.22656 5.28865 5.32260 5.38066
5.43914 5.55823 5.61587 5.80002 6.00845 6.10525 6.45425 6.64082
6.84307 7.32429 8.82583
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.035703 B = 0.007916 C = 0.007594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 784.055072 B = 3536.244671 C = 3686.283497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.111 4.111
3 C 0.196 3.804
4 H 0.005 0.995
5 C -0.538 4.538
6 H 0.038 0.962
7 C 0.023 3.977
8 N -0.940 5.940
9 Si 0.922 3.078
10 H -0.282 1.282
11 H -0.288 1.288
12 H -0.220 1.220
13 N -0.654 5.654
14 C 0.061 3.939
15 H 0.084 0.916
16 C 0.028 3.972
17 O -0.398 6.398
18 C 0.070 3.930
19 H 0.088 0.912
20 C -0.157 4.157
21 C -0.104 4.104
22 H 0.100 0.900
23 C -0.132 4.132
24 H 0.054 0.946
25 H 0.065 0.935
26 H 0.040 0.960
27 H 0.038 0.962
28 H 0.047 0.953
29 H 0.265 0.735
30 H 0.337 0.663
31 H 0.054 0.946
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.057 0.943
35 H 0.087 0.913
36 H 0.041 0.959
37 H 0.073 0.927
38 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.698 4.699 6.661 16.807
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.150 4.150
3 C 0.087 3.913
4 H 0.023 0.977
5 C -0.576 4.576
6 H 0.057 0.943
7 C -0.176 4.176
8 N -0.579 5.579
9 Si 0.746 3.254
10 H -0.208 1.208
11 H -0.214 1.214
12 H -0.143 1.143
13 N -0.284 5.284
14 C -0.051 4.051
15 H 0.102 0.898
16 C -0.050 4.050
17 O -0.318 6.318
18 C 0.012 3.988
19 H 0.105 0.895
20 C -0.214 4.214
21 C -0.123 4.123
22 H 0.118 0.882
23 C -0.189 4.189
24 H 0.073 0.927
25 H 0.084 0.916
26 H 0.059 0.941
27 H 0.056 0.944
28 H 0.066 0.934
29 H 0.074 0.926
30 H 0.156 0.844
31 H 0.072 0.928
32 H 0.088 0.912
33 H 0.075 0.925
34 H 0.076 0.924
35 H 0.106 0.894
36 H 0.060 0.940
37 H 0.092 0.908
38 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -15.008 4.329 6.698 16.996
hybrid contribution 1.123 0.371 -1.404 1.835
sum -13.886 4.700 5.295 15.587
Atomic orbital electron populations
1.21715 0.95342 1.01111 1.01334 1.21817 0.95644 0.97749 0.99740
1.19375 0.92218 0.92220 0.87511 0.97715 1.21624 0.91864 1.40705
1.03384 0.94337 1.25735 0.95747 0.94226 1.01915 1.70106 1.13023
1.45037 1.29718 0.86298 0.82198 0.77605 0.79309 1.20823 1.21368
1.14260 1.60564 1.11900 1.31083 1.24856 1.23388 0.94249 0.89494
0.97970 0.89752 1.24054 0.90706 0.90717 0.99562 1.88365 1.41378
1.39660 1.62362 1.23000 0.94187 0.91380 0.90192 0.89453 1.22170
1.02809 1.00620 0.95797 1.22635 0.98724 0.95923 0.94983 0.88194
1.21664 0.98923 1.01937 0.96349 0.92668 0.91570 0.94051 0.94399
0.93368 0.92608 0.84365 0.92826 0.91185 0.92469 0.92388 0.89444
0.94017 0.90795 0.92072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.47 9.13 71.98 0.66 -3.81 16
2 C -0.11 -4.56 4.81 30.59 0.15 -4.42 16
3 C 0.20 8.64 1.65 44.17 0.07 8.71 16
4 H 0.01 0.23 6.20 -2.39 -0.01 0.22 16
5 C -0.54 -29.40 9.06 25.60 0.23 -29.17 16
6 H 0.04 2.33 7.62 -2.91 -0.02 2.31 16
7 C 0.02 1.28 5.34 84.66 0.45 1.73 16
8 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16
9 Si 0.92 42.78 25.74 68.60 1.77 44.55 16
10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16
11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16
12 H -0.22 -9.19 5.32 99.48 0.53 -8.66 16
13 N -0.65 -24.26 4.70 -465.91 -2.19 -26.45 16
14 C 0.06 1.90 2.31 46.37 0.11 2.01 16
15 H 0.08 2.70 7.08 -2.39 -0.02 2.69 16
16 C 0.03 0.92 7.10 72.65 0.52 1.44 16
17 O -0.40 -12.39 11.02 -148.98 -1.64 -14.03 16
18 C 0.07 1.67 4.09 31.07 0.13 1.80 16
19 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
20 C -0.16 -3.08 8.40 71.98 0.60 -2.47 16
21 C -0.10 -2.55 3.53 -9.53 -0.03 -2.59 16
22 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
23 C -0.13 -3.13 7.19 71.98 0.52 -2.62 16
24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16
25 H 0.07 2.00 7.25 -2.38 -0.02 1.98 16
26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
27 H 0.04 1.64 4.58 -2.39 -0.01 1.63 16
28 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16
29 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16
30 H 0.34 13.33 6.95 -89.69 -0.62 12.71 16
31 H 0.05 1.81 7.44 -2.39 -0.02 1.80 16
32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
33 H 0.06 1.21 6.49 -2.39 -0.02 1.20 16
34 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16
35 H 0.09 1.31 7.73 -2.38 -0.02 1.29 16
36 H 0.04 1.06 6.76 -2.39 -0.02 1.05 16
37 H 0.07 1.39 7.14 -2.39 -0.02 1.38 16
38 H 0.06 1.65 7.44 -2.39 -0.02 1.63 16
Total: -1.00 -61.36 285.54 1.86 -59.50
By element:
Atomic # 1 Polarization: 22.98 SS G_CDS: 0.23 Total: 23.21 kcal
Atomic # 6 Polarization: -32.79 SS G_CDS: 3.40 Total: -29.39 kcal
Atomic # 7 Polarization: -81.95 SS G_CDS: -1.89 Total: -83.84 kcal
Atomic # 8 Polarization: -12.39 SS G_CDS: -1.64 Total: -14.03 kcal
Atomic # 14 Polarization: 42.78 SS G_CDS: 1.77 Total: 44.55 kcal
Total: -61.36 1.86 -59.50 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000405639064.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.474 kcal
(2) G-P(sol) polarization free energy of solvation -61.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.834 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds