Wall clock time and date at job start Mon Mar 30 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47397 * 2 1 4 4 C 1.53086 * 109.47847 * 239.98091 * 2 1 3 5 5 C 1.53181 * 109.16485 * 182.39274 * 4 2 1 6 6 C 1.52993 * 109.54620 * 176.84439 * 5 4 2 7 7 N 1.46905 * 109.47039 * 175.00201 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47001 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47392 * 239.99632 * 13 11 9 17 17 C 1.53182 * 109.03003 * 56.97678 * 5 4 2 18 18 C 1.53088 * 109.16876 * 303.01914 * 17 5 4 19 19 H 1.08997 * 109.48440 * 177.59203 * 18 17 5 20 20 C 1.52998 * 109.47992 * 297.63284 * 18 17 5 21 21 O 1.42897 * 109.48987 * 120.02832 * 2 1 3 22 22 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46879 * 300.02039 * 1 2 3 24 24 H 1.08993 * 109.47366 * 60.02237 * 1 2 3 25 25 H 1.09001 * 109.52621 * 62.48934 * 4 2 1 26 26 H 1.09004 * 109.57401 * 302.32725 * 4 2 1 27 27 H 1.08998 * 109.54238 * 297.02979 * 5 4 2 28 28 H 1.09001 * 109.47393 * 55.00482 * 6 5 4 29 29 H 1.08998 * 109.47408 * 295.00128 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04956 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.52478 * 62.93207 * 17 5 4 35 35 H 1.09006 * 109.51774 * 183.11452 * 17 5 4 36 36 H 1.09005 * 109.46858 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.47247 * 299.93411 * 20 18 17 38 38 H 1.08993 * 109.47471 * 59.93754 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0405 -0.7220 -1.2496 5 6 3.5711 -0.7704 -1.2125 6 6 4.0877 -1.5588 -2.4176 7 7 5.5554 -1.5030 -2.4466 8 6 6.0881 -2.2505 -3.5935 9 6 7.5930 -2.1714 -3.5895 10 1 8.1027 -1.6205 -2.8129 11 6 8.3191 -2.8014 -4.5779 12 7 7.6983 -3.4718 -5.5239 13 14 10.1844 -2.7027 -4.5733 14 1 10.6346 -1.8947 -3.4116 15 1 10.7523 -4.0714 -4.4748 16 1 10.6494 -2.0633 -5.8304 17 6 4.0179 -1.4595 0.0805 18 6 3.4310 -0.7090 1.2788 19 1 3.7105 -1.2199 2.2001 20 6 3.9761 0.7204 1.3022 21 8 2.0068 -0.6741 1.1663 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3634 0.5134 -0.8901 25 1 1.7146 -0.1841 -2.1399 26 1 1.6445 -1.7374 -1.2721 27 1 3.9688 0.2441 -1.2427 28 1 3.6895 -1.1237 -3.3343 29 1 3.7651 -2.5969 -2.3381 30 1 5.9473 -1.8414 -1.5805 31 1 5.7793 -3.2935 -3.5225 32 1 5.7037 -1.8199 -4.5180 33 1 8.2092 -3.9153 -6.2190 34 1 3.6618 -2.4897 0.0860 35 1 5.1062 -1.4490 0.1415 36 1 3.5578 1.2548 2.1552 37 1 5.0624 0.6937 1.3881 38 1 3.6969 1.2309 0.3806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591765454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:36 Heat of formation + Delta-G solvation = -72.079977 kcal Electronic energy + Delta-G solvation = -16231.187170 eV Core-core repulsion = 13686.492341 eV Total energy + Delta-G solvation = -2544.694829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93729 -35.99781 -33.46632 -33.34641 -31.92068 -29.65757 -26.98600 -26.63182 -24.33621 -22.65432 -21.48905 -20.60822 -19.19206 -16.50736 -16.28695 -15.86139 -15.25859 -14.80614 -14.51013 -14.02882 -13.77821 -13.14924 -12.86186 -12.79940 -12.59745 -12.07199 -11.98724 -11.92424 -11.66777 -11.37416 -11.23903 -11.00265 -10.85243 -10.69333 -10.49089 -10.30722 -9.98416 -9.81781 -9.34780 -9.06602 -8.48465 -7.27871 -6.03356 -4.05300 3.30695 3.37833 3.42948 3.77021 4.42474 4.69640 4.79214 4.95179 4.97683 5.12432 5.22051 5.32603 5.37814 5.40681 5.46559 5.57320 5.58847 5.69505 5.81220 5.88644 5.97893 6.01219 6.05170 6.13291 6.18816 6.29246 6.30791 6.48078 6.64842 7.26798 7.31972 7.42996 7.78986 8.13390 8.40576 8.62593 9.04421 9.59736 11.07908 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049228 B = 0.004993 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.645060 B = 5606.291866 C = 5987.698093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.059 0.941 4 C -0.144 4.144 5 C -0.087 4.087 6 C 0.065 3.935 7 N -0.690 5.690 8 C 0.193 3.807 9 C -0.513 4.513 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.146 4.146 18 C 0.089 3.911 19 H 0.098 0.902 20 C -0.185 4.185 21 O -0.379 6.379 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.327 0.673 31 H -0.015 1.015 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 6.438 11.835 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.077 0.923 4 C -0.182 4.182 5 C -0.106 4.106 6 C -0.065 4.065 7 N -0.321 5.321 8 C 0.066 3.934 9 C -0.552 4.552 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.183 4.183 18 C 0.032 3.968 19 H 0.116 0.884 20 C -0.242 4.242 21 O -0.299 6.299 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.144 0.856 31 H 0.003 0.997 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.768 6.855 11.465 17.802 hybrid contribution 1.095 -0.899 -0.156 1.426 sum -10.673 5.955 11.309 16.651 Atomic orbital electron populations 1.21763 0.93545 1.02741 1.02066 1.22061 0.94469 0.95455 0.85406 0.92280 1.22249 0.96244 1.01688 0.97997 1.21260 0.93980 1.00690 0.94660 1.21891 0.90952 0.96846 0.96791 1.60698 1.03038 1.60983 1.07380 1.19555 0.94941 0.90494 0.88411 1.21233 0.91189 1.31800 1.10977 0.91944 1.25002 0.98909 0.95280 0.95442 1.69980 1.35509 1.34203 1.14088 0.86428 0.85247 0.77657 0.77992 1.19650 1.21085 1.20985 1.22253 1.01656 0.99786 0.94646 1.22144 0.80591 0.95571 0.98524 0.88432 1.22445 1.02052 0.97370 1.02376 1.87930 1.21025 1.77850 1.43067 0.91961 0.92181 0.91243 0.91048 0.91293 0.90186 0.91870 0.96487 0.85611 0.99695 0.95489 0.92975 0.91504 0.90279 0.92384 0.91250 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.57 37.16 0.36 -1.02 16 2 C 0.08 0.96 2.94 -26.68 -0.08 0.89 16 3 H 0.06 0.66 6.34 -51.93 -0.33 0.33 16 4 C -0.14 -1.79 4.70 -26.59 -0.13 -1.91 16 5 C -0.09 -1.25 2.17 -90.44 -0.20 -1.45 16 6 C 0.07 1.18 5.15 -3.82 -0.02 1.16 16 7 N -0.69 -14.99 6.49 -115.06 -0.75 -15.73 16 8 C 0.19 5.16 5.44 -4.98 -0.03 5.13 16 9 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 10 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 13 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.15 -1.96 4.63 -26.59 -0.12 -2.09 16 18 C 0.09 1.07 3.91 -26.69 -0.10 0.97 16 19 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.19 -2.02 8.65 37.16 0.32 -1.70 16 21 O -0.38 -4.96 10.24 -35.23 -0.36 -5.32 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.19 6.62 -51.93 -0.34 0.85 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.33 6.75 7.08 -39.29 -0.28 6.47 16 31 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.09 6.85 -51.93 -0.36 0.74 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.74 4.98 -51.93 -0.26 0.48 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -30.42 296.64 -7.94 -38.36 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.61 Total: 1.45 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.42 Total: -13.61 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.01 Total: -42.16 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.36 Total: -5.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.42 -7.94 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591765454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.721 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds