Wall clock time and date at job start Mon Mar 30 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47397 * 2 1 4 4 C 1.53086 * 109.47847 * 239.98091 * 2 1 3 5 5 C 1.53181 * 109.16485 * 182.39274 * 4 2 1 6 6 C 1.52993 * 109.54620 * 176.84439 * 5 4 2 7 7 N 1.46905 * 109.47039 * 175.00201 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47001 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47392 * 239.99632 * 13 11 9 17 17 C 1.53182 * 109.03003 * 56.97678 * 5 4 2 18 18 C 1.53088 * 109.16876 * 303.01914 * 17 5 4 19 19 H 1.08997 * 109.48440 * 177.59203 * 18 17 5 20 20 C 1.52998 * 109.47992 * 297.63284 * 18 17 5 21 21 O 1.42897 * 109.48987 * 120.02832 * 2 1 3 22 22 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46879 * 300.02039 * 1 2 3 24 24 H 1.08993 * 109.47366 * 60.02237 * 1 2 3 25 25 H 1.09001 * 109.52621 * 62.48934 * 4 2 1 26 26 H 1.09004 * 109.57401 * 302.32725 * 4 2 1 27 27 H 1.08998 * 109.54238 * 297.02979 * 5 4 2 28 28 H 1.09001 * 109.47393 * 55.00482 * 6 5 4 29 29 H 1.08998 * 109.47408 * 295.00128 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04956 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.52478 * 62.93207 * 17 5 4 35 35 H 1.09006 * 109.51774 * 183.11452 * 17 5 4 36 36 H 1.09005 * 109.46858 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.47247 * 299.93411 * 20 18 17 38 38 H 1.08993 * 109.47471 * 59.93754 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0405 -0.7220 -1.2496 5 6 3.5711 -0.7704 -1.2125 6 6 4.0877 -1.5588 -2.4176 7 7 5.5554 -1.5030 -2.4466 8 6 6.0881 -2.2505 -3.5935 9 6 7.5930 -2.1714 -3.5895 10 1 8.1027 -1.6205 -2.8129 11 6 8.3191 -2.8014 -4.5779 12 7 7.6983 -3.4718 -5.5239 13 14 10.1844 -2.7027 -4.5733 14 1 10.6346 -1.8947 -3.4116 15 1 10.7523 -4.0714 -4.4748 16 1 10.6494 -2.0633 -5.8304 17 6 4.0179 -1.4595 0.0805 18 6 3.4310 -0.7090 1.2788 19 1 3.7105 -1.2199 2.2001 20 6 3.9761 0.7204 1.3022 21 8 2.0068 -0.6741 1.1663 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3634 0.5134 -0.8901 25 1 1.7146 -0.1841 -2.1399 26 1 1.6445 -1.7374 -1.2721 27 1 3.9688 0.2441 -1.2427 28 1 3.6895 -1.1237 -3.3343 29 1 3.7651 -2.5969 -2.3381 30 1 5.9473 -1.8414 -1.5805 31 1 5.7793 -3.2935 -3.5225 32 1 5.7037 -1.8199 -4.5180 33 1 8.2092 -3.9153 -6.2190 34 1 3.6618 -2.4897 0.0860 35 1 5.1062 -1.4490 0.1415 36 1 3.5578 1.2548 2.1552 37 1 5.0624 0.6937 1.3881 38 1 3.6969 1.2309 0.3806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591765454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:36 Heat of formation + Delta-G solvation = -92.228081 kcal Electronic energy + Delta-G solvation = -16232.060858 eV Core-core repulsion = 13686.492341 eV Total energy + Delta-G solvation = -2545.568516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96584 -37.56743 -35.24734 -34.24933 -33.70258 -30.76099 -28.80050 -27.60336 -25.95301 -23.72853 -23.37390 -21.86637 -20.22663 -18.60445 -17.28526 -17.03342 -16.73971 -16.52697 -15.71565 -15.35490 -15.14232 -14.74366 -14.36797 -13.95998 -13.70545 -13.52466 -13.21665 -12.94444 -12.85103 -12.77258 -12.65367 -12.60017 -12.46543 -12.03858 -11.90840 -11.78124 -11.51162 -11.23449 -10.87551 -10.68593 -10.28502 -9.15552 -8.24524 -6.36244 1.40680 1.41514 1.55600 2.39049 2.86673 3.08934 3.45274 3.73014 3.85383 3.99284 4.00017 4.16676 4.36556 4.40363 4.44766 4.58172 4.59609 4.62516 4.77374 4.84847 4.91716 4.94536 5.04558 5.06966 5.10270 5.19146 5.23022 5.24549 5.27707 5.36951 5.49705 5.60908 5.99722 6.38474 6.41731 6.70049 6.86954 7.35157 8.87602 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049228 B = 0.004993 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.645060 B = 5606.291866 C = 5987.698093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.067 0.933 4 C -0.140 4.140 5 C -0.078 4.078 6 C 0.066 3.934 7 N -0.686 5.686 8 C 0.206 3.794 9 C -0.536 4.536 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.144 4.144 18 C 0.090 3.910 19 H 0.110 0.890 20 C -0.181 4.181 21 O -0.391 6.391 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.010 0.990 30 H 0.334 0.666 31 H -0.042 1.042 32 H -0.001 1.001 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 7.429 12.976 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.085 0.915 4 C -0.178 4.178 5 C -0.096 4.096 6 C -0.063 4.063 7 N -0.317 5.317 8 C 0.078 3.922 9 C -0.574 4.574 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.800 3.200 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.182 4.182 18 C 0.033 3.967 19 H 0.128 0.872 20 C -0.239 4.239 21 O -0.311 6.311 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.152 0.848 31 H -0.025 1.025 32 H 0.017 0.983 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.474 7.855 12.628 18.783 hybrid contribution 0.936 -1.219 -0.524 1.624 sum -10.538 6.636 12.104 17.367 Atomic orbital electron populations 1.21774 0.91940 1.02861 1.03271 1.22184 0.95749 0.95389 0.84229 0.91523 1.22231 0.94457 1.01792 0.99326 1.21154 0.95433 0.99832 0.93211 1.21972 0.88644 0.97167 0.98557 1.60583 1.05280 1.59635 1.06187 1.19220 0.94652 0.89135 0.89157 1.21577 0.92158 1.32230 1.11431 0.91604 1.25996 1.04542 0.94504 0.94759 1.70109 1.37809 1.34851 1.14805 0.85240 0.78325 0.78048 0.78406 1.18497 1.20253 1.20336 1.22230 1.01394 0.99521 0.95046 1.22192 0.80261 0.96186 0.98070 0.87181 1.22408 1.02268 0.96550 1.02632 1.87929 1.21404 1.78160 1.43628 0.92392 0.91449 0.89605 0.90036 0.91924 0.90212 0.92523 0.97158 0.84761 1.02458 0.98324 0.92579 0.92376 0.90789 0.91207 0.90937 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.57 71.98 0.69 -1.70 16 2 C 0.08 1.73 2.94 30.62 0.09 1.82 16 3 H 0.07 1.33 6.34 -2.38 -0.02 1.31 16 4 C -0.14 -3.32 4.70 30.68 0.14 -3.17 16 5 C -0.08 -2.18 2.17 -10.67 -0.02 -2.20 16 6 C 0.07 2.42 5.15 86.30 0.44 2.87 16 7 N -0.69 -30.20 6.49 -517.93 -3.36 -33.56 16 8 C 0.21 11.39 5.44 85.56 0.47 11.86 16 9 C -0.54 -31.07 9.32 25.60 0.24 -30.83 16 10 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 11 C 0.00 0.00 5.46 84.66 0.46 0.47 16 12 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 13 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.14 -3.78 4.63 30.68 0.14 -3.63 16 18 C 0.09 2.02 3.91 30.62 0.12 2.14 16 19 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 20 C -0.18 -3.59 8.65 71.98 0.62 -2.97 16 21 O -0.39 -9.52 10.24 -148.98 -1.53 -11.04 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.08 2.28 6.62 -2.39 -0.02 2.26 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.33 13.88 7.08 -89.69 -0.63 13.25 16 31 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 32 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 2.00 6.85 -2.38 -0.02 1.98 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.24 4.98 -2.39 -0.01 1.23 16 Total: -1.00 -64.74 296.64 1.20 -63.53 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.38 Total: 16.91 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 3.39 Total: -25.36 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -3.08 Total: -90.58 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.53 Total: -11.04 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -64.74 1.20 -63.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591765454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.693 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds