Wall clock time and date at job start Mon Mar 30 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.45472 * 2 1 4 4 C 1.53040 * 109.46226 * 119.96788 * 2 1 3 5 5 C 1.53126 * 109.27755 * 60.83823 * 4 2 1 6 6 C 1.53113 * 109.15960 * 57.65289 * 5 4 2 7 7 C 1.53039 * 109.28246 * 302.34677 * 6 5 4 8 8 H 1.08999 * 109.45083 * 299.17041 * 7 6 5 9 9 C 1.52997 * 109.46496 * 179.19560 * 7 6 5 10 10 O 1.42894 * 109.47170 * 304.94563 * 9 7 6 11 11 N 1.46842 * 109.46272 * 240.02080 * 2 1 3 12 12 C 1.46896 * 111.00058 * 65.82699 * 11 2 1 13 13 C 1.52996 * 109.47256 * 45.78490 * 12 11 2 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47082 * 299.97429 * 1 2 3 24 24 H 1.08997 * 109.47135 * 59.97797 * 1 2 3 25 25 H 1.08997 * 109.50368 * 300.89920 * 4 2 1 26 26 H 1.08999 * 109.53625 * 180.79693 * 4 2 1 27 27 H 1.08997 * 109.52140 * 297.74822 * 5 4 2 28 28 H 1.08998 * 109.57250 * 177.58810 * 5 4 2 29 29 H 1.09006 * 109.50561 * 182.40286 * 6 5 4 30 30 H 1.09006 * 109.53605 * 62.30622 * 6 5 4 31 31 H 1.09003 * 109.47039 * 64.94840 * 9 7 6 32 32 H 1.09003 * 109.47003 * 184.94494 * 9 7 6 33 33 H 0.96704 * 114.00301 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46774 * 285.78689 * 12 11 2 35 35 H 1.09000 * 109.47723 * 165.79078 * 12 11 2 36 36 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 37 37 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.5443 -2.1695 1.2358 6 6 2.0269 -2.8532 -0.0465 7 6 1.5175 -2.0706 -1.2589 8 1 0.4275 -2.0609 -1.2528 9 6 2.0142 -2.7388 -2.5425 10 8 3.4376 -2.8562 -2.4983 11 7 2.0193 -0.6918 -1.1993 12 6 1.6652 0.0504 -2.4165 13 6 1.9795 1.5346 -2.2184 14 6 1.6157 2.2961 -3.4669 15 1 1.2013 1.7738 -4.3166 16 6 1.8060 3.6606 -3.5223 17 7 2.3102 4.2967 -2.4875 18 14 1.3478 4.6056 -5.0670 19 1 0.8045 3.6652 -6.0797 20 1 0.3197 5.6252 -4.7369 21 1 2.5545 5.2779 -5.6123 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 1.6637 -0.2162 2.1399 26 1 3.1298 -0.7091 1.2584 27 1 0.4549 -2.1821 1.2674 28 1 1.9401 -2.6994 2.1022 29 1 1.6415 -3.8722 -0.0829 30 1 3.1167 -2.8756 -0.0596 31 1 1.5704 -3.7305 -2.6310 32 1 1.7260 -2.1338 -3.4021 33 1 3.8226 -3.2717 -3.2821 34 1 0.6013 -0.0717 -2.6199 35 1 2.2423 -0.3341 -3.2574 36 1 3.0434 1.6567 -2.0150 37 1 1.4024 1.9191 -1.3776 38 1 2.4445 5.2566 -2.5265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685971999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:42 Heat of formation + Delta-G solvation = -58.669245 kcal Electronic energy + Delta-G solvation = -16975.300213 eV Core-core repulsion = 14431.186917 eV Total energy + Delta-G solvation = -2544.113296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59299 -36.24144 -34.18055 -32.44418 -31.84040 -29.24668 -27.20588 -25.76263 -24.53799 -22.78471 -20.92553 -20.08396 -18.11036 -16.84939 -16.51772 -15.31855 -15.23872 -14.64871 -14.43580 -13.85248 -13.53155 -13.16554 -12.74883 -12.61434 -12.41946 -12.03834 -11.66107 -11.63043 -11.18644 -11.00744 -10.94972 -10.66642 -10.52104 -10.28577 -10.21331 -9.85569 -9.70006 -9.49546 -9.20557 -8.96160 -8.30792 -7.46403 -5.97616 -3.99412 3.31867 3.39299 3.43035 4.38909 4.53044 4.61161 5.06889 5.10935 5.21278 5.38441 5.49896 5.56158 5.60349 5.72958 5.76314 5.88833 5.92680 6.01348 6.07827 6.20267 6.24626 6.31447 6.43125 6.46408 6.51314 6.64747 6.74059 6.90291 7.03221 7.63830 7.74395 7.86481 7.93081 7.98358 8.12801 8.47482 9.07656 9.63899 11.13742 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032993 B = 0.007416 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.455759 B = 3774.743266 C = 4282.429107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 H 0.101 0.899 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.104 4.104 7 C 0.082 3.918 8 H 0.048 0.952 9 C 0.081 3.919 10 O -0.553 6.553 11 N -0.517 5.517 12 C 0.063 3.937 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.368 0.632 34 H 0.016 0.984 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 -13.651 4.263 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.027 4.027 8 H 0.065 0.935 9 C 0.003 3.997 10 O -0.356 6.356 11 N -0.241 5.241 12 C -0.064 4.064 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.213 0.787 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.741 -13.212 4.930 14.209 hybrid contribution -1.181 0.407 -1.510 1.960 sum -2.923 -12.805 3.421 13.572 Atomic orbital electron populations 1.22475 0.98473 1.00978 1.02416 1.21785 0.92222 0.99603 0.89742 0.88158 1.21599 1.01348 0.94863 0.97002 1.21614 1.00244 0.96518 0.97471 1.21474 1.02477 0.96900 0.93310 1.21682 0.96204 0.90679 0.94143 0.93479 1.22269 0.81890 0.97629 0.97913 1.86623 1.19894 1.84326 1.44782 1.62190 1.58899 1.00130 1.02917 1.22312 0.96618 0.97073 0.90404 1.19238 0.97672 0.87683 0.96947 1.21232 1.41884 0.92501 1.00202 0.92876 1.24987 0.95334 0.97815 0.96181 1.69979 1.44909 1.08722 1.29609 0.86564 0.78122 0.79952 0.83512 1.19840 1.21086 1.20989 0.93110 0.92808 0.91846 0.92247 0.91355 0.92511 0.92571 0.92840 0.90334 0.94430 0.93199 0.78712 0.96564 0.92022 0.95784 0.96010 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.01 37.16 0.30 -2.77 16 2 C 0.07 1.35 2.41 -67.72 -0.16 1.19 16 3 H 0.10 2.12 5.81 -51.93 -0.30 1.81 16 4 C -0.11 -1.67 5.61 -26.65 -0.15 -1.82 16 5 C -0.12 -1.60 5.70 -26.61 -0.15 -1.75 16 6 C -0.10 -1.46 5.19 -26.65 -0.14 -1.60 16 7 C 0.08 1.29 1.90 -67.72 -0.13 1.16 16 8 H 0.05 0.74 6.19 -51.93 -0.32 0.42 16 9 C 0.08 1.16 6.30 37.16 0.23 1.40 16 10 O -0.55 -8.20 12.71 -35.23 -0.45 -8.65 16 11 N -0.52 -9.82 4.54 -218.77 -0.99 -10.81 16 12 C 0.06 1.36 3.65 -3.83 -0.01 1.34 16 13 C 0.02 0.57 4.19 -27.88 -0.12 0.45 16 14 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.05 0.76 4.80 -51.93 -0.25 0.51 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.19 6.59 -51.93 -0.34 0.85 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.23 7.54 -51.93 -0.39 0.84 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.76 6.26 -51.93 -0.33 0.43 16 33 H 0.37 3.71 9.12 45.56 0.42 4.12 16 34 H 0.02 0.35 7.14 -51.93 -0.37 -0.02 16 35 H 0.06 1.36 6.73 -51.93 -0.35 1.01 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.59 5.81 -51.93 -0.30 0.29 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -31.22 284.52 -7.56 -38.78 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.38 Total: 1.81 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.74 Total: -15.97 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.26 Total: -37.07 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.45 Total: -8.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.22 -7.56 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.892 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds