Wall clock time and date at job start Mon Mar 30 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.45472 * 2 1 4 4 C 1.53040 * 109.46226 * 119.96788 * 2 1 3 5 5 C 1.53126 * 109.27755 * 60.83823 * 4 2 1 6 6 C 1.53113 * 109.15960 * 57.65289 * 5 4 2 7 7 C 1.53039 * 109.28246 * 302.34677 * 6 5 4 8 8 H 1.08999 * 109.45083 * 299.17041 * 7 6 5 9 9 C 1.52997 * 109.46496 * 179.19560 * 7 6 5 10 10 O 1.42894 * 109.47170 * 304.94563 * 9 7 6 11 11 N 1.46842 * 109.46272 * 240.02080 * 2 1 3 12 12 C 1.46896 * 111.00058 * 65.82699 * 11 2 1 13 13 C 1.52996 * 109.47256 * 45.78490 * 12 11 2 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47082 * 299.97429 * 1 2 3 24 24 H 1.08997 * 109.47135 * 59.97797 * 1 2 3 25 25 H 1.08997 * 109.50368 * 300.89920 * 4 2 1 26 26 H 1.08999 * 109.53625 * 180.79693 * 4 2 1 27 27 H 1.08997 * 109.52140 * 297.74822 * 5 4 2 28 28 H 1.08998 * 109.57250 * 177.58810 * 5 4 2 29 29 H 1.09006 * 109.50561 * 182.40286 * 6 5 4 30 30 H 1.09006 * 109.53605 * 62.30622 * 6 5 4 31 31 H 1.09003 * 109.47039 * 64.94840 * 9 7 6 32 32 H 1.09003 * 109.47003 * 184.94494 * 9 7 6 33 33 H 0.96704 * 114.00301 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46774 * 285.78689 * 12 11 2 35 35 H 1.09000 * 109.47723 * 165.79078 * 12 11 2 36 36 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 37 37 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.5443 -2.1695 1.2358 6 6 2.0269 -2.8532 -0.0465 7 6 1.5175 -2.0706 -1.2589 8 1 0.4275 -2.0609 -1.2528 9 6 2.0142 -2.7388 -2.5425 10 8 3.4376 -2.8562 -2.4983 11 7 2.0193 -0.6918 -1.1993 12 6 1.6652 0.0504 -2.4165 13 6 1.9795 1.5346 -2.2184 14 6 1.6157 2.2961 -3.4669 15 1 1.2013 1.7738 -4.3166 16 6 1.8060 3.6606 -3.5223 17 7 2.3102 4.2967 -2.4875 18 14 1.3478 4.6056 -5.0670 19 1 0.8045 3.6652 -6.0797 20 1 0.3197 5.6252 -4.7369 21 1 2.5545 5.2779 -5.6123 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 1.6637 -0.2162 2.1399 26 1 3.1298 -0.7091 1.2584 27 1 0.4549 -2.1821 1.2674 28 1 1.9401 -2.6994 2.1022 29 1 1.6415 -3.8722 -0.0829 30 1 3.1167 -2.8756 -0.0596 31 1 1.5704 -3.7305 -2.6310 32 1 1.7260 -2.1338 -3.4021 33 1 3.8226 -3.2717 -3.2821 34 1 0.6013 -0.0717 -2.6199 35 1 2.2423 -0.3341 -3.2574 36 1 3.0434 1.6567 -2.0150 37 1 1.4024 1.9191 -1.3776 38 1 2.4445 5.2566 -2.5265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:42 Heat of formation + Delta-G solvation = -81.862699 kcal Electronic energy + Delta-G solvation = -16976.305957 eV Core-core repulsion = 14431.186917 eV Total energy + Delta-G solvation = -2545.119040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95132 -37.39914 -35.93612 -34.32019 -33.11339 -31.06987 -28.67347 -26.96455 -26.39653 -24.39136 -22.20279 -21.72280 -19.42917 -18.61916 -18.01334 -16.82933 -16.71162 -16.40265 -15.99785 -15.07474 -14.96793 -14.52274 -14.34287 -13.99364 -13.87304 -13.71261 -13.23971 -13.00928 -12.85731 -12.70766 -12.43703 -12.34662 -12.05613 -11.89453 -11.66042 -11.31608 -11.23661 -11.00298 -10.82653 -10.65827 -10.51444 -8.95927 -8.20602 -6.31850 1.38211 1.38915 1.52032 2.39168 3.07477 3.12473 3.53800 3.87785 3.94069 4.02740 4.26292 4.35322 4.46223 4.49855 4.51543 4.55852 4.62313 4.67956 4.73527 4.78411 5.01257 5.08042 5.10951 5.12852 5.15132 5.17356 5.33251 5.44093 5.46453 5.63345 5.71332 5.81695 6.15225 6.41931 6.48888 6.85284 7.04686 7.36958 8.91525 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032993 B = 0.007416 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.455759 B = 3774.743266 C = 4282.429107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 H 0.055 0.945 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.098 4.098 7 C 0.074 3.926 8 H 0.055 0.945 9 C 0.081 3.919 10 O -0.575 6.575 11 N -0.530 5.530 12 C 0.084 3.916 13 C 0.034 3.966 14 C -0.543 4.543 15 H 0.057 0.943 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.387 0.613 34 H 0.018 0.982 35 H 0.056 0.944 36 H -0.016 1.016 37 H 0.003 0.997 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -15.355 4.061 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.038 4.038 3 H 0.073 0.927 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.034 4.034 8 H 0.073 0.927 9 C 0.003 3.997 10 O -0.381 6.381 11 N -0.254 5.254 12 C -0.044 4.044 13 C -0.003 4.003 14 C -0.582 4.582 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.203 1.203 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.235 0.765 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.002 0.998 37 H 0.022 0.978 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.853 -14.943 4.723 15.929 hybrid contribution -0.785 0.925 -1.411 1.861 sum -3.639 -14.017 3.312 14.856 Atomic orbital electron populations 1.22366 0.97141 1.02174 1.01635 1.21737 0.93305 0.97771 0.90951 0.92652 1.21560 1.00484 0.96530 0.95784 1.21607 1.00983 0.94662 0.98016 1.21446 1.01341 0.98123 0.92652 1.21910 0.96729 0.88626 0.96179 0.92725 1.22286 0.81921 0.99036 0.96451 1.86570 1.20329 1.84859 1.46361 1.62141 1.59757 1.01720 1.01831 1.21897 0.96374 0.94289 0.91821 1.19022 0.94597 0.90977 0.95703 1.21650 1.42159 0.93359 1.01012 0.92428 1.25958 0.94976 0.98917 0.99784 1.70120 1.45771 1.09220 1.31960 0.85392 0.78026 0.78412 0.79159 1.18592 1.20249 1.20341 0.90748 0.91493 0.94720 0.90668 0.92787 0.91243 0.90238 0.89953 0.92195 0.90920 0.94634 0.76478 0.96418 0.92575 0.99782 0.97837 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.72 8.01 71.98 0.58 -5.14 16 2 C 0.07 2.61 2.41 44.94 0.11 2.72 16 3 H 0.06 2.51 5.81 -2.39 -0.01 2.49 16 4 C -0.11 -3.10 5.61 30.65 0.17 -2.93 16 5 C -0.12 -2.68 5.70 30.67 0.17 -2.51 16 6 C -0.10 -2.47 5.19 30.65 0.16 -2.31 16 7 C 0.07 2.20 1.90 44.94 0.09 2.28 16 8 H 0.06 1.56 6.19 -2.39 -0.01 1.55 16 9 C 0.08 2.17 6.30 71.98 0.45 2.62 16 10 O -0.57 -16.28 12.71 -148.98 -1.89 -18.17 16 11 N -0.53 -20.36 4.54 -846.04 -3.84 -24.20 16 12 C 0.08 3.74 3.65 86.30 0.32 4.05 16 13 C 0.03 1.90 4.19 29.85 0.12 2.02 16 14 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 18 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H 0.07 2.06 4.80 -2.38 -0.01 2.05 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.31 6.59 -2.39 -0.02 1.30 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.48 6.56 -2.39 -0.02 1.46 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 1.76 7.54 -2.38 -0.02 1.75 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.04 6.26 -2.39 -0.01 1.03 16 33 H 0.39 7.23 9.12 -74.05 -0.68 6.55 16 34 H 0.02 0.78 7.14 -2.38 -0.02 0.76 16 35 H 0.06 2.54 6.73 -2.39 -0.02 2.52 16 36 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 37 H 0.00 0.20 5.81 -2.39 -0.01 0.19 16 38 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -69.20 284.52 -0.19 -69.39 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.37 Total: 13.82 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 2.87 Total: -30.34 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.55 Total: -81.84 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -1.89 Total: -18.17 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.20 -0.19 -69.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.476 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds