Wall clock time and date at job start Mon Mar 30 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46819 * 2 1 4 4 N 1.46502 * 109.46823 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99988 * 269.32797 * 4 3 2 6 6 H 1.08000 * 120.00566 * 325.89001 * 5 4 3 7 7 C 1.38814 * 120.00234 * 145.88600 * 5 4 3 8 8 N 1.31622 * 120.00015 * 336.89436 * 7 5 4 9 9 Si 1.86794 * 120.00170 * 156.88681 * 7 5 4 10 10 H 1.48496 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47199 * 120.00486 * 9 7 5 12 12 H 1.48509 * 109.47447 * 240.00273 * 9 7 5 13 13 C 1.46503 * 120.00044 * 89.32658 * 4 3 2 14 14 C 1.53001 * 109.46976 * 90.00252 * 13 4 3 15 15 O 1.42900 * 109.47263 * 65.00065 * 14 13 4 16 16 C 1.42900 * 113.99928 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46971 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49917 * 243.62108 * 17 16 15 19 19 C 1.53005 * 117.49682 * 174.99686 * 17 16 15 20 20 H 1.08994 * 109.47630 * 59.99493 * 1 2 3 21 21 H 1.08996 * 109.47281 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46877 * 299.99878 * 1 2 3 23 23 H 1.08997 * 109.46679 * 240.00727 * 2 1 3 24 24 H 1.08990 * 109.47173 * 120.00316 * 2 1 3 25 25 H 1.08999 * 109.47408 * 60.00822 * 3 2 1 26 26 H 1.09003 * 109.47766 * 299.99881 * 3 2 1 27 27 H 0.96997 * 120.00251 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47175 * 330.00072 * 13 4 3 29 29 H 1.08998 * 109.47067 * 210.00005 * 13 4 3 30 30 H 1.09006 * 109.46865 * 305.00213 * 14 13 4 31 31 H 1.08995 * 109.47333 * 184.99755 * 14 13 4 32 32 H 1.08999 * 109.47172 * 60.00022 * 16 15 14 33 33 H 1.08994 * 109.47273 * 299.99666 * 16 15 14 34 34 H 1.09001 * 115.54934 * 29.32849 * 17 16 15 35 35 H 1.09002 * 117.49658 * 359.97438 * 18 17 16 36 36 H 1.08999 * 117.49978 * 145.02181 * 18 17 16 37 37 H 1.08998 * 117.49713 * 214.97349 * 19 17 16 38 38 H 1.08995 * 117.49821 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4562 1.1849 6 1 3.7899 1.9906 2.0338 7 6 5.3992 0.7833 1.2957 8 7 5.6767 -0.2103 0.4782 9 14 6.6324 1.2878 2.6048 10 1 6.0847 2.4232 3.3896 11 1 6.8907 0.1395 3.5104 12 1 7.9024 1.7014 1.9554 13 6 4.2369 1.4278 -1.2696 14 6 4.4918 2.8651 -1.7280 15 8 5.3606 3.5148 -0.7979 16 6 5.6636 4.8701 -1.1346 17 6 6.5951 5.4628 -0.0754 18 6 6.0665 6.6347 0.7542 19 6 7.1320 6.8749 -0.3173 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 6.5216 -0.6803 0.5553 28 1 3.6476 0.9052 -2.0230 29 1 5.1894 0.9155 -1.1337 30 1 3.5454 3.4036 -1.7783 31 1 4.9570 2.8550 -2.7137 32 1 4.7414 5.4499 -1.1723 33 1 6.1529 4.9020 -2.1081 34 1 7.2552 4.7515 0.4211 35 1 5.0553 6.9837 0.5450 36 1 6.3788 6.6945 1.7968 37 1 8.1452 7.0928 0.0205 38 1 6.8213 7.3818 -1.2308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:03 Heat of formation + Delta-G solvation = -11.097887 kcal Electronic energy + Delta-G solvation = -16457.329118 eV Core-core repulsion = 13915.278670 eV Total energy + Delta-G solvation = -2542.050447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.88251 -36.50189 -35.33597 -32.72901 -30.75877 -28.57966 -26.07924 -25.39977 -22.95361 -22.21813 -21.21455 -20.29996 -19.54760 -16.59948 -16.25763 -15.31867 -14.84586 -14.46478 -14.15392 -14.15031 -13.53995 -13.08497 -12.86437 -12.49656 -11.92679 -11.62916 -11.39370 -11.24386 -10.99582 -10.81437 -10.61818 -10.58517 -10.39320 -10.14640 -10.13737 -9.90963 -9.70051 -9.61055 -9.54973 -8.68600 -8.29817 -6.45065 -5.60041 -3.10943 3.50130 3.57556 3.61755 3.92800 4.42612 4.67527 5.06090 5.11713 5.41127 5.49687 5.56174 5.67974 5.71440 5.80145 5.82980 5.90239 5.98746 6.03697 6.12142 6.18649 6.24650 6.35269 6.38633 6.51391 6.54520 6.59114 6.71175 6.80680 6.85496 7.12749 7.34093 7.79246 7.99098 8.17715 8.69263 9.35510 10.01515 10.55066 11.41767 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.009255 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.897538 B = 3024.577698 C = 3829.234989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.231 4.231 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.290 1.290 13 C 0.139 3.861 14 C 0.050 3.950 15 O -0.346 6.346 16 C 0.089 3.911 17 C -0.142 4.142 18 C -0.176 4.176 19 C -0.181 4.181 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.028 0.972 27 H 0.250 0.750 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 8.637 -3.939 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.361 4.361 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.216 1.216 13 C 0.012 3.988 14 C -0.029 4.029 15 O -0.264 6.264 16 C 0.012 3.988 17 C -0.161 4.161 18 C -0.213 4.213 19 C -0.219 4.219 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.005 8.451 -3.764 9.466 hybrid contribution 0.612 0.403 0.341 0.808 sum -1.392 8.854 -3.423 9.594 Atomic orbital electron populations 1.21760 0.97941 1.00213 1.00585 1.22113 0.92879 1.01049 1.02046 1.20925 0.85696 0.93281 0.97941 1.43776 0.99030 1.84777 1.02295 1.18911 1.02551 1.24273 0.90376 0.92587 1.24889 1.00326 0.95191 0.98012 1.69960 1.23499 1.20008 1.40415 0.86355 0.82076 0.77820 0.81245 1.20325 1.22426 1.21630 1.21054 1.00696 0.90484 0.86535 1.23402 0.91060 0.98052 0.90430 1.88228 1.67145 1.22110 1.48949 1.21867 0.95861 0.85921 0.95183 1.22147 1.02048 0.90717 1.01150 1.22995 0.98570 1.03036 0.96743 1.22939 0.98892 0.99252 1.00773 0.93780 0.93962 0.93470 0.93160 0.91863 0.94089 0.95330 0.93999 0.94398 0.87444 0.95660 0.95842 0.94452 0.94366 0.86977 0.88909 0.88911 0.88873 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.83 6.26 -26.73 -0.17 -2.99 16 3 C 0.15 3.18 5.67 -4.04 -0.02 3.16 16 4 N -0.58 -14.64 2.43 -173.24 -0.42 -15.06 16 5 C -0.23 -6.48 8.98 -15.06 -0.14 -6.62 16 6 H 0.06 1.60 7.93 -52.49 -0.42 1.19 16 7 C 0.01 0.41 4.95 -17.43 -0.09 0.32 16 8 N -0.89 -26.29 11.33 55.49 0.63 -25.66 16 9 Si 0.89 22.82 29.61 -169.99 -5.03 17.78 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 C 0.14 3.33 5.73 -4.04 -0.02 3.30 16 14 C 0.05 1.04 6.28 37.16 0.23 1.27 16 15 O -0.35 -7.81 9.82 -35.23 -0.35 -8.15 16 16 C 0.09 1.58 6.22 37.16 0.23 1.81 16 17 C -0.14 -2.36 6.06 -90.61 -0.55 -2.91 16 18 C -0.18 -2.51 10.18 -26.73 -0.27 -2.78 16 19 C -0.18 -2.32 10.25 -26.72 -0.27 -2.59 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 25 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 26 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.11 2.95 5.33 -51.93 -0.28 2.68 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -29.95 314.35 -8.11 -38.07 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.98 Total: -1.74 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.70 Total: -9.98 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.21 Total: -40.72 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.35 Total: -8.15 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.95 -8.11 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.969 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds