Wall clock time and date at job start Mon Mar 30 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46819 * 2 1 4 4 N 1.46502 * 109.46823 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99988 * 269.32797 * 4 3 2 6 6 H 1.08000 * 120.00566 * 325.89001 * 5 4 3 7 7 C 1.38814 * 120.00234 * 145.88600 * 5 4 3 8 8 N 1.31622 * 120.00015 * 336.89436 * 7 5 4 9 9 Si 1.86794 * 120.00170 * 156.88681 * 7 5 4 10 10 H 1.48496 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47199 * 120.00486 * 9 7 5 12 12 H 1.48509 * 109.47447 * 240.00273 * 9 7 5 13 13 C 1.46503 * 120.00044 * 89.32658 * 4 3 2 14 14 C 1.53001 * 109.46976 * 90.00252 * 13 4 3 15 15 O 1.42900 * 109.47263 * 65.00065 * 14 13 4 16 16 C 1.42900 * 113.99928 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46971 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49917 * 243.62108 * 17 16 15 19 19 C 1.53005 * 117.49682 * 174.99686 * 17 16 15 20 20 H 1.08994 * 109.47630 * 59.99493 * 1 2 3 21 21 H 1.08996 * 109.47281 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46877 * 299.99878 * 1 2 3 23 23 H 1.08997 * 109.46679 * 240.00727 * 2 1 3 24 24 H 1.08990 * 109.47173 * 120.00316 * 2 1 3 25 25 H 1.08999 * 109.47408 * 60.00822 * 3 2 1 26 26 H 1.09003 * 109.47766 * 299.99881 * 3 2 1 27 27 H 0.96997 * 120.00251 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47175 * 330.00072 * 13 4 3 29 29 H 1.08998 * 109.47067 * 210.00005 * 13 4 3 30 30 H 1.09006 * 109.46865 * 305.00213 * 14 13 4 31 31 H 1.08995 * 109.47333 * 184.99755 * 14 13 4 32 32 H 1.08999 * 109.47172 * 60.00022 * 16 15 14 33 33 H 1.08994 * 109.47273 * 299.99666 * 16 15 14 34 34 H 1.09001 * 115.54934 * 29.32849 * 17 16 15 35 35 H 1.09002 * 117.49658 * 359.97438 * 18 17 16 36 36 H 1.08999 * 117.49978 * 145.02181 * 18 17 16 37 37 H 1.08998 * 117.49713 * 214.97349 * 19 17 16 38 38 H 1.08995 * 117.49821 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4562 1.1849 6 1 3.7899 1.9906 2.0338 7 6 5.3992 0.7833 1.2957 8 7 5.6767 -0.2103 0.4782 9 14 6.6324 1.2878 2.6048 10 1 6.0847 2.4232 3.3896 11 1 6.8907 0.1395 3.5104 12 1 7.9024 1.7014 1.9554 13 6 4.2369 1.4278 -1.2696 14 6 4.4918 2.8651 -1.7280 15 8 5.3606 3.5148 -0.7979 16 6 5.6636 4.8701 -1.1346 17 6 6.5951 5.4628 -0.0754 18 6 6.0665 6.6347 0.7542 19 6 7.1320 6.8749 -0.3173 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 6.5216 -0.6803 0.5553 28 1 3.6476 0.9052 -2.0230 29 1 5.1894 0.9155 -1.1337 30 1 3.5454 3.4036 -1.7783 31 1 4.9570 2.8550 -2.7137 32 1 4.7414 5.4499 -1.1723 33 1 6.1529 4.9020 -2.1081 34 1 7.2552 4.7515 0.4211 35 1 5.0553 6.9837 0.5450 36 1 6.3788 6.6945 1.7968 37 1 8.1452 7.0928 0.0205 38 1 6.8213 7.3818 -1.2308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:03 Heat of formation + Delta-G solvation = -27.585738 kcal Electronic energy + Delta-G solvation = -16458.044085 eV Core-core repulsion = 13915.278670 eV Total energy + Delta-G solvation = -2542.765414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.32597 -38.08217 -36.92932 -34.51478 -32.69351 -30.28008 -27.54949 -27.21415 -24.76555 -23.26819 -22.89459 -21.62970 -21.29649 -18.62601 -17.72240 -16.93531 -16.53794 -16.19963 -15.80858 -15.54076 -15.28409 -14.74531 -14.42706 -13.94458 -13.58086 -13.31410 -12.95487 -12.73407 -12.63681 -12.46569 -12.40691 -12.07864 -12.03329 -11.92931 -11.69671 -11.55497 -11.33002 -11.28313 -11.04198 -10.42891 -10.20361 -8.50842 -7.73118 -5.26847 1.42956 1.47387 1.55934 2.57875 2.73384 3.09645 3.37983 3.72351 3.92217 3.97200 4.16005 4.29453 4.37745 4.42780 4.49204 4.58127 4.66199 4.72444 4.73884 4.81432 4.84836 4.89521 4.95876 4.97983 5.00832 5.21948 5.22967 5.25762 5.29565 5.48722 5.64182 5.73505 5.89188 6.50255 6.71192 7.26956 7.98342 8.46092 9.24275 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.009255 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.897538 B = 3024.577698 C = 3829.234989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.594 5.594 5 C -0.231 4.231 6 H 0.044 0.956 7 C -0.029 4.029 8 N -0.919 5.919 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.137 3.863 14 C 0.058 3.942 15 O -0.387 6.387 16 C 0.089 3.911 17 C -0.180 4.180 18 C -0.178 4.178 19 C -0.148 4.148 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.246 0.754 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 10.409 -4.664 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.315 5.315 5 C -0.361 4.361 6 H 0.062 0.938 7 C -0.225 4.225 8 N -0.566 5.566 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.222 1.222 12 H -0.222 1.222 13 C 0.010 3.990 14 C -0.021 4.021 15 O -0.306 6.306 16 C 0.012 3.988 17 C -0.198 4.198 18 C -0.215 4.215 19 C -0.185 4.185 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.897 10.237 -4.494 11.549 hybrid contribution 0.848 -0.107 0.545 1.014 sum -2.049 10.130 -3.949 11.064 Atomic orbital electron populations 1.21657 0.94145 1.01637 1.01987 1.21946 0.96139 0.99362 0.99747 1.21061 0.83672 0.94341 0.98956 1.43970 1.00585 1.85015 1.01896 1.18978 1.02931 1.23170 0.91055 0.93813 1.25392 1.01668 0.95547 0.99872 1.70072 1.23532 1.21021 1.41940 0.85586 0.80127 0.77458 0.79516 1.19903 1.22247 1.22224 1.20987 0.99063 0.92468 0.86458 1.23187 0.91860 0.96052 0.90992 1.88164 1.67565 1.24725 1.50167 1.22041 0.96727 0.83753 0.96277 1.22107 1.03171 0.91944 1.02621 1.23102 0.99716 1.01360 0.97292 1.23056 0.99258 0.95317 1.00843 0.91764 0.92596 0.92641 0.94341 0.95297 0.94316 0.92862 0.94479 0.93126 0.91077 0.94369 0.93470 0.93265 0.92789 0.90040 0.88078 0.88732 0.87383 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.25 16 2 C -0.13 -5.21 6.26 30.59 0.19 -5.02 16 3 C 0.15 6.11 5.67 86.38 0.49 6.60 16 4 N -0.59 -30.13 2.43 -702.00 -1.71 -31.84 16 5 C -0.23 -13.14 8.98 84.03 0.75 -12.38 16 6 H 0.04 2.56 7.93 -2.91 -0.02 2.54 16 7 C -0.03 -1.67 4.95 84.86 0.42 -1.25 16 8 N -0.92 -55.53 11.33 21.65 0.25 -55.29 16 9 Si 0.94 47.99 29.61 68.60 2.03 50.02 16 10 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 12 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 13 C 0.14 6.54 5.73 86.38 0.49 7.04 16 14 C 0.06 2.35 6.28 71.98 0.45 2.80 16 15 O -0.39 -17.36 9.82 -148.98 -1.46 -18.82 16 16 C 0.09 3.02 6.22 71.98 0.45 3.46 16 17 C -0.18 -5.81 6.06 -10.79 -0.07 -5.87 16 18 C -0.18 -4.72 10.18 30.60 0.31 -4.40 16 19 C -0.15 -3.36 10.25 30.60 0.31 -3.04 16 20 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 26 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.05 2.22 8.07 -2.39 -0.02 2.20 16 29 H 0.07 4.01 5.33 -2.39 -0.01 3.99 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.53 7.87 -2.39 -0.02 1.51 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.10 2.49 8.03 -2.39 -0.02 2.47 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.54 314.35 4.62 -60.92 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.99 Total: 10.33 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.52 Total: -15.33 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -1.46 Total: -87.13 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -1.46 Total: -18.82 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -65.54 4.62 -60.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.334 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds