Wall clock time and date at job start Mon Mar 30 2020 03:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52992 * 109.47353 * 2 1
4 4 N 1.46499 * 109.47227 * 120.00175 * 2 1 3
5 5 C 1.36938 * 119.99981 * 302.15972 * 4 2 1
6 6 H 1.07997 * 119.99831 * 321.81776 * 5 4 2
7 7 C 1.38810 * 119.99909 * 141.82617 * 5 4 2
8 8 N 1.31617 * 120.00547 * 338.56880 * 7 5 4
9 9 Si 1.86805 * 119.99754 * 158.57015 * 7 5 4
10 10 H 1.48501 * 109.47418 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47243 * 119.99697 * 9 7 5
12 12 H 1.48503 * 109.47001 * 239.99675 * 9 7 5
13 13 C 1.46500 * 120.00230 * 122.15688 * 4 2 1
14 14 C 1.53003 * 109.47191 * 89.99892 * 13 4 2
15 15 O 1.42897 * 109.46901 * 65.00124 * 14 13 4
16 16 C 1.42905 * 113.99815 * 180.02562 * 15 14 13
17 17 C 1.53002 * 109.46708 * 180.02562 * 16 15 14
18 18 C 1.53001 * 117.49328 * 243.61807 * 17 16 15
19 19 C 1.52997 * 60.00031 * 252.51426 * 18 17 16
20 20 H 1.09004 * 109.46951 * 305.39995 * 1 2 3
21 21 H 1.08997 * 109.47143 * 65.40066 * 1 2 3
22 22 H 1.09006 * 109.47220 * 185.40143 * 1 2 3
23 23 H 1.08997 * 109.46915 * 239.99683 * 2 1 3
24 24 H 1.09000 * 109.47662 * 180.43268 * 3 2 1
25 25 H 1.09001 * 109.47566 * 300.43505 * 3 2 1
26 26 H 1.09005 * 109.47325 * 60.43135 * 3 2 1
27 27 H 0.96992 * 120.00198 * 180.02562 * 8 7 5
28 28 H 1.09003 * 109.47239 * 329.99855 * 13 4 2
29 29 H 1.09005 * 109.47477 * 210.00143 * 13 4 2
30 30 H 1.08994 * 109.47062 * 305.00409 * 14 13 4
31 31 H 1.09003 * 109.46874 * 185.00181 * 14 13 4
32 32 H 1.08999 * 109.47290 * 59.99859 * 16 15 14
33 33 H 1.09000 * 109.46994 * 300.00020 * 16 15 14
34 34 H 1.08994 * 115.55487 * 29.32933 * 17 16 15
35 35 H 1.08993 * 117.50157 * 0.02562 * 18 17 16
36 36 H 1.09003 * 117.49642 * 145.02725 * 18 17 16
37 37 H 1.09006 * 117.49875 * 252.51019 * 19 18 17
38 38 H 1.08998 * 117.50158 * 107.49495 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 1.6514 -0.2492 2.4394
6 1 1.5715 0.8100 2.6345
7 6 1.3824 -1.1631 3.4490
8 7 1.0642 -2.4038 3.1460
9 14 1.4720 -0.6321 5.2377
10 1 1.8484 0.8026 5.3100
11 1 0.1477 -0.8297 5.8797
12 1 2.4918 -1.4472 5.9455
13 6 2.8992 -1.8536 1.0622
14 6 4.3572 -1.3900 1.0470
15 8 4.6859 -0.8103 2.3110
16 6 6.0328 -0.3417 2.4029
17 6 6.2716 0.2549 3.7914
18 6 6.5999 1.7471 3.8721
19 6 7.6930 0.7082 4.1306
20 1 -0.3633 0.5953 0.8377
21 1 -0.3633 0.4278 -0.9344
22 1 -0.3634 -1.0232 0.0967
23 1 1.8933 -0.5139 -0.8899
24 1 3.1300 1.4425 -0.0078
25 1 1.6704 1.9586 -0.8860
26 1 1.6830 1.9541 0.8939
27 1 0.8759 -3.0423 3.8514
28 1 2.6739 -2.3748 0.1318
29 1 2.7411 -2.5280 1.9039
30 1 4.4943 -0.6481 0.2604
31 1 5.0080 -2.2439 0.8585
32 1 6.2043 0.4221 1.6444
33 1 6.7187 -1.1735 2.2424
34 1 5.6745 -0.1737 4.5963
35 1 6.6454 2.3037 2.9362
36 1 6.2187 2.3005 4.7303
37 1 8.0309 0.5782 5.1588
38 1 8.4580 0.5813 3.3646
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687715808.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:57:09
Heat of formation + Delta-G solvation = -23.791610 kcal
Electronic energy + Delta-G solvation = -16785.966631 eV
Core-core repulsion = 14243.365743 eV
Total energy + Delta-G solvation = -2542.600888 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-39.34869 -38.25338 -37.02712 -34.16570 -32.29466 -29.50929 -27.72985 -27.54175
-25.72886 -23.27376 -22.87859 -21.49779 -21.24404 -18.18827 -17.66821 -16.95089
-16.59081 -16.20831 -15.64028 -15.40082 -15.33426 -14.48768 -14.22899 -13.73170
-13.57518 -13.10636 -13.04385 -12.89432 -12.73607 -12.52254 -12.40227 -12.21666
-12.02789 -11.80055 -11.68459 -11.58077 -11.32557 -11.20077 -11.01748 -10.38221
-10.18974 -8.40349 -7.68878 -5.26414 1.42800 1.47373 1.55526 2.58984
2.73673 3.10052 3.41522 3.69192 3.92524 3.97358 4.16649 4.36118
4.37917 4.46783 4.58567 4.60316 4.68191 4.73213 4.76594 4.81931
4.93856 4.96173 4.98071 4.99530 5.18701 5.21946 5.22118 5.22445
5.26605 5.63226 5.70741 5.78427 5.89487 6.56401 6.72992 7.32974
8.03099 8.53428 9.28088
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.019416 B = 0.010655 C = 0.008447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1441.764758 B = 2627.268882 C = 3313.945846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.152 3.848
3 C -0.140 4.140
4 N -0.587 5.587
5 C -0.213 4.213
6 H 0.041 0.959
7 C -0.030 4.030
8 N -0.921 5.921
9 Si 0.937 3.063
10 H -0.275 1.275
11 H -0.296 1.296
12 H -0.297 1.297
13 C 0.141 3.859
14 C 0.058 3.942
15 O -0.387 6.387
16 C 0.090 3.910
17 C -0.179 4.179
18 C -0.178 4.178
19 C -0.149 4.149
20 H 0.032 0.968
21 H 0.066 0.934
22 H 0.026 0.974
23 H 0.062 0.938
24 H 0.039 0.961
25 H 0.068 0.932
26 H 0.032 0.968
27 H 0.244 0.756
28 H 0.052 0.948
29 H 0.063 0.937
30 H 0.039 0.961
31 H 0.045 0.955
32 H 0.048 0.952
33 H 0.053 0.947
34 H 0.082 0.918
35 H 0.100 0.900
36 H 0.094 0.906
37 H 0.108 0.892
38 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.318 5.325 -4.324 12.390
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.046 3.954
3 C -0.199 4.199
4 N -0.308 5.308
5 C -0.344 4.344
6 H 0.059 0.941
7 C -0.226 4.226
8 N -0.567 5.567
9 Si 0.768 3.232
10 H -0.200 1.200
11 H -0.223 1.223
12 H -0.224 1.224
13 C 0.015 3.985
14 C -0.021 4.021
15 O -0.306 6.306
16 C 0.013 3.987
17 C -0.197 4.197
18 C -0.215 4.215
19 C -0.185 4.185
20 H 0.052 0.948
21 H 0.085 0.915
22 H 0.045 0.955
23 H 0.080 0.920
24 H 0.058 0.942
25 H 0.087 0.913
26 H 0.051 0.949
27 H 0.053 0.947
28 H 0.070 0.930
29 H 0.081 0.919
30 H 0.057 0.943
31 H 0.063 0.937
32 H 0.066 0.934
33 H 0.071 0.929
34 H 0.100 0.900
35 H 0.119 0.881
36 H 0.112 0.888
37 H 0.126 0.874
38 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 10.133 5.226 -4.090 12.113
hybrid contribution -0.062 -0.109 1.089 1.096
sum 10.071 5.118 -3.001 11.689
Atomic orbital electron populations
1.21956 0.97587 0.99845 1.00023 1.20670 0.92760 0.92893 0.89086
1.22012 0.99829 0.97529 1.00491 1.43962 1.52480 1.33012 1.01369
1.18740 1.37612 0.90267 0.87784 0.94102 1.25479 0.99769 0.96565
1.00755 1.70087 1.50327 1.04926 1.31404 0.85669 0.76253 0.77829
0.83435 1.19987 1.22345 1.22410 1.20945 0.86538 0.90762 1.00296
1.23221 0.98476 0.95543 0.84833 1.88160 1.28162 1.79393 1.34859
1.22023 0.84493 0.97194 0.94975 1.22103 1.00911 0.98826 0.97886
1.23092 1.03453 0.91230 1.03713 1.23053 0.90351 1.01444 1.03683
0.94830 0.91522 0.95475 0.91962 0.94170 0.91326 0.94855 0.94653
0.92986 0.91884 0.94329 0.93677 0.93354 0.92870 0.89967 0.88138
0.88761 0.87392 0.86981
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.44 9.04 71.98 0.65 -4.79 16
2 C 0.15 6.21 3.36 44.99 0.15 6.36 16
3 C -0.14 -5.08 9.20 71.98 0.66 -4.41 16
4 N -0.59 -28.95 2.34 -678.05 -1.59 -30.54 16
5 C -0.21 -11.83 7.74 84.03 0.65 -11.18 16
6 H 0.04 2.36 6.94 -2.91 -0.02 2.34 16
7 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16
8 N -0.92 -55.33 11.52 21.65 0.25 -55.08 16
9 Si 0.94 47.79 29.60 68.60 2.03 49.82 16
10 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16
11 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16
12 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16
13 C 0.14 6.64 5.70 86.38 0.49 7.13 16
14 C 0.06 2.32 6.28 71.98 0.45 2.77 16
15 O -0.39 -17.10 9.82 -148.98 -1.46 -18.56 16
16 C 0.09 3.02 6.22 71.98 0.45 3.47 16
17 C -0.18 -5.71 6.06 -10.79 -0.07 -5.78 16
18 C -0.18 -4.70 10.18 30.59 0.31 -4.39 16
19 C -0.15 -3.35 10.25 30.59 0.31 -3.04 16
20 H 0.03 1.45 7.80 -2.38 -0.02 1.43 16
21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16
23 H 0.06 2.31 7.78 -2.39 -0.02 2.29 16
24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
26 H 0.03 1.33 7.06 -2.38 -0.02 1.31 16
27 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16
28 H 0.05 2.23 7.90 -2.39 -0.02 2.21 16
29 H 0.06 3.50 5.56 -2.38 -0.01 3.49 16
30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
32 H 0.05 1.49 7.88 -2.39 -0.02 1.47 16
33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16
35 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16
36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16
37 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16
38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16
Total: -1.00 -64.53 310.39 4.71 -59.82
By element:
Atomic # 1 Polarization: 8.69 SS G_CDS: 0.99 Total: 9.68 kcal
Atomic # 6 Polarization: -19.63 SS G_CDS: 4.49 Total: -15.14 kcal
Atomic # 7 Polarization: -84.28 SS G_CDS: -1.34 Total: -85.62 kcal
Atomic # 8 Polarization: -17.10 SS G_CDS: -1.46 Total: -18.56 kcal
Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal
Total: -64.53 4.71 -59.82 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687715808.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.031 kcal
(2) G-P(sol) polarization free energy of solvation -64.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds