Wall clock time and date at job start Mon Mar 30 2020 03:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47353 * 2 1 4 4 N 1.46499 * 109.47227 * 120.00175 * 2 1 3 5 5 C 1.36938 * 119.99981 * 302.15972 * 4 2 1 6 6 H 1.07997 * 119.99831 * 321.81776 * 5 4 2 7 7 C 1.38810 * 119.99909 * 141.82617 * 5 4 2 8 8 N 1.31617 * 120.00547 * 338.56880 * 7 5 4 9 9 Si 1.86805 * 119.99754 * 158.57015 * 7 5 4 10 10 H 1.48501 * 109.47418 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47243 * 119.99697 * 9 7 5 12 12 H 1.48503 * 109.47001 * 239.99675 * 9 7 5 13 13 C 1.46500 * 120.00230 * 122.15688 * 4 2 1 14 14 C 1.53003 * 109.47191 * 89.99892 * 13 4 2 15 15 O 1.42897 * 109.46901 * 65.00124 * 14 13 4 16 16 C 1.42905 * 113.99815 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46708 * 180.02562 * 16 15 14 18 18 C 1.53001 * 117.49328 * 243.61807 * 17 16 15 19 19 C 1.52997 * 60.00031 * 252.51426 * 18 17 16 20 20 H 1.09004 * 109.46951 * 305.39995 * 1 2 3 21 21 H 1.08997 * 109.47143 * 65.40066 * 1 2 3 22 22 H 1.09006 * 109.47220 * 185.40143 * 1 2 3 23 23 H 1.08997 * 109.46915 * 239.99683 * 2 1 3 24 24 H 1.09000 * 109.47662 * 180.43268 * 3 2 1 25 25 H 1.09001 * 109.47566 * 300.43505 * 3 2 1 26 26 H 1.09005 * 109.47325 * 60.43135 * 3 2 1 27 27 H 0.96992 * 120.00198 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47239 * 329.99855 * 13 4 2 29 29 H 1.09005 * 109.47477 * 210.00143 * 13 4 2 30 30 H 1.08994 * 109.47062 * 305.00409 * 14 13 4 31 31 H 1.09003 * 109.46874 * 185.00181 * 14 13 4 32 32 H 1.08999 * 109.47290 * 59.99859 * 16 15 14 33 33 H 1.09000 * 109.46994 * 300.00020 * 16 15 14 34 34 H 1.08994 * 115.55487 * 29.32933 * 17 16 15 35 35 H 1.08993 * 117.50157 * 0.02562 * 18 17 16 36 36 H 1.09003 * 117.49642 * 145.02725 * 18 17 16 37 37 H 1.09006 * 117.49875 * 252.51019 * 19 18 17 38 38 H 1.08998 * 117.50158 * 107.49495 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6514 -0.2492 2.4394 6 1 1.5715 0.8100 2.6345 7 6 1.3824 -1.1631 3.4490 8 7 1.0642 -2.4038 3.1460 9 14 1.4720 -0.6321 5.2377 10 1 1.8484 0.8026 5.3100 11 1 0.1477 -0.8297 5.8797 12 1 2.4918 -1.4472 5.9455 13 6 2.8992 -1.8536 1.0622 14 6 4.3572 -1.3900 1.0470 15 8 4.6859 -0.8103 2.3110 16 6 6.0328 -0.3417 2.4029 17 6 6.2716 0.2549 3.7914 18 6 6.5999 1.7471 3.8721 19 6 7.6930 0.7082 4.1306 20 1 -0.3633 0.5953 0.8377 21 1 -0.3633 0.4278 -0.9344 22 1 -0.3634 -1.0232 0.0967 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4425 -0.0078 25 1 1.6704 1.9586 -0.8860 26 1 1.6830 1.9541 0.8939 27 1 0.8759 -3.0423 3.8514 28 1 2.6739 -2.3748 0.1318 29 1 2.7411 -2.5280 1.9039 30 1 4.4943 -0.6481 0.2604 31 1 5.0080 -2.2439 0.8585 32 1 6.2043 0.4221 1.6444 33 1 6.7187 -1.1735 2.2424 34 1 5.6745 -0.1737 4.5963 35 1 6.6454 2.3037 2.9362 36 1 6.2187 2.3005 4.7303 37 1 8.0309 0.5782 5.1588 38 1 8.4580 0.5813 3.3646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687715808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:09 Heat of formation + Delta-G solvation = -23.791610 kcal Electronic energy + Delta-G solvation = -16785.966631 eV Core-core repulsion = 14243.365743 eV Total energy + Delta-G solvation = -2542.600888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34869 -38.25338 -37.02712 -34.16570 -32.29466 -29.50929 -27.72985 -27.54175 -25.72886 -23.27376 -22.87859 -21.49779 -21.24404 -18.18827 -17.66821 -16.95089 -16.59081 -16.20831 -15.64028 -15.40082 -15.33426 -14.48768 -14.22899 -13.73170 -13.57518 -13.10636 -13.04385 -12.89432 -12.73607 -12.52254 -12.40227 -12.21666 -12.02789 -11.80055 -11.68459 -11.58077 -11.32557 -11.20077 -11.01748 -10.38221 -10.18974 -8.40349 -7.68878 -5.26414 1.42800 1.47373 1.55526 2.58984 2.73673 3.10052 3.41522 3.69192 3.92524 3.97358 4.16649 4.36118 4.37917 4.46783 4.58567 4.60316 4.68191 4.73213 4.76594 4.81931 4.93856 4.96173 4.98071 4.99530 5.18701 5.21946 5.22118 5.22445 5.26605 5.63226 5.70741 5.78427 5.89487 6.56401 6.72992 7.32974 8.03099 8.53428 9.28088 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.010655 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.764758 B = 2627.268882 C = 3313.945846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.152 3.848 3 C -0.140 4.140 4 N -0.587 5.587 5 C -0.213 4.213 6 H 0.041 0.959 7 C -0.030 4.030 8 N -0.921 5.921 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.297 1.297 13 C 0.141 3.859 14 C 0.058 3.942 15 O -0.387 6.387 16 C 0.090 3.910 17 C -0.179 4.179 18 C -0.178 4.178 19 C -0.149 4.149 20 H 0.032 0.968 21 H 0.066 0.934 22 H 0.026 0.974 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.244 0.756 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 5.325 -4.324 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 C -0.199 4.199 4 N -0.308 5.308 5 C -0.344 4.344 6 H 0.059 0.941 7 C -0.226 4.226 8 N -0.567 5.567 9 Si 0.768 3.232 10 H -0.200 1.200 11 H -0.223 1.223 12 H -0.224 1.224 13 C 0.015 3.985 14 C -0.021 4.021 15 O -0.306 6.306 16 C 0.013 3.987 17 C -0.197 4.197 18 C -0.215 4.215 19 C -0.185 4.185 20 H 0.052 0.948 21 H 0.085 0.915 22 H 0.045 0.955 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.133 5.226 -4.090 12.113 hybrid contribution -0.062 -0.109 1.089 1.096 sum 10.071 5.118 -3.001 11.689 Atomic orbital electron populations 1.21956 0.97587 0.99845 1.00023 1.20670 0.92760 0.92893 0.89086 1.22012 0.99829 0.97529 1.00491 1.43962 1.52480 1.33012 1.01369 1.18740 1.37612 0.90267 0.87784 0.94102 1.25479 0.99769 0.96565 1.00755 1.70087 1.50327 1.04926 1.31404 0.85669 0.76253 0.77829 0.83435 1.19987 1.22345 1.22410 1.20945 0.86538 0.90762 1.00296 1.23221 0.98476 0.95543 0.84833 1.88160 1.28162 1.79393 1.34859 1.22023 0.84493 0.97194 0.94975 1.22103 1.00911 0.98826 0.97886 1.23092 1.03453 0.91230 1.03713 1.23053 0.90351 1.01444 1.03683 0.94830 0.91522 0.95475 0.91962 0.94170 0.91326 0.94855 0.94653 0.92986 0.91884 0.94329 0.93677 0.93354 0.92870 0.89967 0.88138 0.88761 0.87392 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.04 71.98 0.65 -4.79 16 2 C 0.15 6.21 3.36 44.99 0.15 6.36 16 3 C -0.14 -5.08 9.20 71.98 0.66 -4.41 16 4 N -0.59 -28.95 2.34 -678.05 -1.59 -30.54 16 5 C -0.21 -11.83 7.74 84.03 0.65 -11.18 16 6 H 0.04 2.36 6.94 -2.91 -0.02 2.34 16 7 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16 8 N -0.92 -55.33 11.52 21.65 0.25 -55.08 16 9 Si 0.94 47.79 29.60 68.60 2.03 49.82 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 12 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 13 C 0.14 6.64 5.70 86.38 0.49 7.13 16 14 C 0.06 2.32 6.28 71.98 0.45 2.77 16 15 O -0.39 -17.10 9.82 -148.98 -1.46 -18.56 16 16 C 0.09 3.02 6.22 71.98 0.45 3.47 16 17 C -0.18 -5.71 6.06 -10.79 -0.07 -5.78 16 18 C -0.18 -4.70 10.18 30.59 0.31 -4.39 16 19 C -0.15 -3.35 10.25 30.59 0.31 -3.04 16 20 H 0.03 1.45 7.80 -2.38 -0.02 1.43 16 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.06 2.31 7.78 -2.39 -0.02 2.29 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.03 1.33 7.06 -2.38 -0.02 1.31 16 27 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.05 2.23 7.90 -2.39 -0.02 2.21 16 29 H 0.06 3.50 5.56 -2.38 -0.01 3.49 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.49 7.88 -2.39 -0.02 1.47 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.53 310.39 4.71 -59.82 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.99 Total: 9.68 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.49 Total: -15.14 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -1.34 Total: -85.62 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.46 Total: -18.56 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -64.53 4.71 -59.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.031 kcal (2) G-P(sol) polarization free energy of solvation -64.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds