Wall clock time and date at job start Mon Mar 30 2020 04:59:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.47258 * 2 1
4 4 O 1.42899 * 109.47198 * 179.97438 * 3 2 1
5 5 C 1.42902 * 113.99967 * 179.97438 * 4 3 2
6 6 H 1.09000 * 110.64295 * 26.85424 * 5 4 3
7 7 C 1.54593 * 110.72702 * 263.50517 * 5 4 3
8 8 C 1.53988 * 105.13853 * 219.68534 * 7 5 4
9 9 N 1.48064 * 107.14543 * 358.91767 * 8 7 5
10 10 C 1.46902 * 111.16437 * 145.63064 * 9 8 7
11 11 C 1.53003 * 109.46914 * 52.60365 * 10 9 8
12 12 C 1.50695 * 109.47240 * 179.97438 * 11 10 9
13 13 H 1.08003 * 119.99515 * 0.02562 * 12 11 10
14 14 C 1.37879 * 120.00226 * 180.02562 * 12 11 10
15 15 N 1.31511 * 119.99706 * 0.02562 * 14 12 11
16 16 Si 1.86801 * 119.99784 * 180.02562 * 14 12 11
17 17 H 1.48495 * 109.47062 * 60.00283 * 16 14 12
18 18 H 1.48500 * 109.46780 * 180.02562 * 16 14 12
19 19 H 1.48494 * 109.47333 * 299.99654 * 16 14 12
20 20 C 1.48537 * 105.73449 * 25.07892 * 9 8 7
21 21 H 1.08996 * 109.47389 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.46742 * 300.00014 * 1 2 3
23 23 H 1.08997 * 109.47244 * 59.99505 * 1 2 3
24 24 H 1.08991 * 109.46842 * 239.99777 * 2 1 3
25 25 H 1.08997 * 109.46904 * 119.99793 * 2 1 3
26 26 H 1.09000 * 109.46827 * 59.99978 * 3 2 1
27 27 H 1.08998 * 109.46957 * 300.00702 * 3 2 1
28 28 H 1.09005 * 110.30927 * 338.60317 * 7 5 4
29 29 H 1.08997 * 110.30746 * 100.76752 * 7 5 4
30 30 H 1.09006 * 109.91426 * 118.12915 * 8 7 5
31 31 H 1.09000 * 109.91854 * 239.41907 * 8 7 5
32 32 H 1.08995 * 109.46938 * 172.60380 * 10 9 8
33 33 H 1.08994 * 109.47047 * 292.60901 * 10 9 8
34 34 H 1.08999 * 109.47096 * 300.00477 * 11 10 9
35 35 H 1.09003 * 109.46926 * 60.00144 * 11 10 9
36 36 H 0.97006 * 119.99710 * 179.97438 * 15 14 12
37 37 H 1.09002 * 110.66696 * 202.50331 * 20 9 8
38 38 H 1.09001 * 110.66368 * 79.54170 * 20 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 3.4691 1.4425 0.0006
5 6 4.0503 2.7480 0.0001
6 1 3.3751 3.4694 0.4601
7 6 4.4229 3.1804 -1.4366
8 6 5.7744 3.9056 -1.3006
9 7 6.1275 3.9046 0.1373
10 6 7.5797 3.7890 0.3268
11 6 8.2889 4.8647 -0.4983
12 6 9.7785 4.7465 -0.3034
13 1 10.1793 3.9805 0.3438
14 6 10.6297 5.6164 -0.9514
15 7 10.1416 6.5495 -1.7392
16 14 12.4763 5.4693 -0.7104
17 1 12.9282 4.1267 -1.1557
18 1 13.1645 6.5142 -1.5102
19 1 12.8039 5.6506 0.7265
20 6 5.4195 2.7387 0.7252
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8899
24 1 1.8933 -0.5138 -0.8899
25 1 1.8933 -0.5138 0.8900
26 1 1.6767 1.9563 0.8900
27 1 1.6766 1.9563 -0.8899
28 1 4.5254 2.3066 -2.0802
29 1 3.6682 3.8583 -1.8353
30 1 6.5392 3.3752 -1.8681
31 1 5.6841 4.9301 -1.6615
32 1 7.8202 3.9226 1.3815
33 1 7.9113 2.8033 0.0005
34 1 8.0482 4.7312 -1.5529
35 1 7.9572 5.8504 -0.1719
36 1 10.7404 7.1617 -2.1948
37 1 5.2870 2.8705 1.7991
38 1 5.9594 1.8152 0.5159
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701708439.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:59:07
Heat of formation + Delta-G solvation = -61.808416 kcal
Electronic energy + Delta-G solvation = -15706.602883 eV
Core-core repulsion = 13162.353462 eV
Total energy + Delta-G solvation = -2544.249421 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-39.15538 -37.14095 -34.02667 -33.16141 -31.31772 -28.87717 -27.81409 -25.93180
-24.20575 -21.91552 -21.63539 -20.74526 -19.41556 -16.99173 -16.39086 -15.91301
-15.53022 -14.98003 -14.45540 -13.90760 -13.77226 -13.46297 -13.35181 -12.65125
-12.44826 -12.27076 -12.02586 -11.83411 -11.33518 -11.22659 -11.00680 -10.98541
-10.94856 -10.80333 -10.55281 -10.33436 -9.92732 -9.54340 -9.27271 -9.13645
-8.34307 -7.81558 -5.98940 -4.01423 3.34556 3.38601 3.41079 3.52436
4.44913 4.64706 4.72672 4.76772 4.93852 4.96092 5.13027 5.19543
5.28616 5.29007 5.36981 5.48338 5.53864 5.71617 5.82432 5.89470
5.92637 5.98606 6.03301 6.11755 6.24391 6.31974 6.45898 6.52199
6.92996 7.22890 7.46674 7.49300 7.74013 7.87461 8.06685 8.43748
9.05249 9.62149 11.12490
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.081979 B = 0.004025 C = 0.003939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 341.469968 B = 6954.179389 C = 7105.972113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.124 4.124
3 C 0.061 3.939
4 O -0.381 6.381
5 C 0.085 3.915
6 H 0.074 0.926
7 C -0.152 4.152
8 C 0.043 3.957
9 N -0.517 5.517
10 C 0.054 3.946
11 C 0.024 3.976
12 C -0.523 4.523
13 H 0.054 0.946
14 C 0.058 3.942
15 N -0.894 5.894
16 Si 0.893 3.107
17 H -0.277 1.277
18 H -0.287 1.287
19 H -0.276 1.276
20 C 0.038 3.962
21 H 0.059 0.941
22 H 0.055 0.945
23 H 0.055 0.945
24 H 0.069 0.931
25 H 0.069 0.931
26 H 0.047 0.953
27 H 0.047 0.953
28 H 0.073 0.927
29 H 0.068 0.932
30 H 0.051 0.949
31 H 0.080 0.920
32 H 0.064 0.936
33 H 0.023 0.977
34 H 0.018 0.982
35 H 0.024 0.976
36 H 0.261 0.739
37 H 0.080 0.920
38 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.983 -9.816 2.384 19.760
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.162 4.162
3 C -0.015 4.015
4 O -0.300 6.300
5 C 0.027 3.973
6 H 0.092 0.908
7 C -0.191 4.191
8 C -0.085 4.085
9 N -0.242 5.242
10 C -0.073 4.073
11 C -0.013 4.013
12 C -0.562 4.562
13 H 0.072 0.928
14 C -0.143 4.143
15 N -0.533 5.533
16 Si 0.721 3.279
17 H -0.203 1.203
18 H -0.213 1.213
19 H -0.202 1.202
20 C -0.091 4.091
21 H 0.079 0.921
22 H 0.074 0.926
23 H 0.074 0.926
24 H 0.088 0.912
25 H 0.088 0.912
26 H 0.065 0.935
27 H 0.065 0.935
28 H 0.092 0.908
29 H 0.087 0.913
30 H 0.070 0.930
31 H 0.099 0.901
32 H 0.083 0.917
33 H 0.041 0.959
34 H 0.037 0.963
35 H 0.043 0.957
36 H 0.071 0.929
37 H 0.099 0.901
38 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -16.966 -9.348 2.516 19.534
hybrid contribution 1.209 -0.493 -0.354 1.353
sum -15.757 -9.842 2.162 18.703
Atomic orbital electron populations
1.21697 0.94929 1.02084 1.01995 1.21463 0.95536 0.95884 1.03284
1.22557 0.81478 0.97503 0.99996 1.87889 1.19165 1.27996 1.94965
1.23042 0.94872 0.83849 0.95540 0.90826 1.22932 0.98270 1.00571
0.97300 1.22757 0.94510 1.00909 0.90348 1.64886 1.10329 1.37601
1.11394 1.22512 0.84015 0.99453 1.01306 1.19158 0.94026 0.93519
0.94631 1.21155 0.91581 1.15618 1.27804 0.92772 1.24996 0.98858
0.95266 0.95198 1.69962 1.35010 1.18427 1.29909 0.86638 0.85359
0.77675 0.78210 1.20280 1.21271 1.20200 1.23189 0.92789 0.93801
0.99272 0.92145 0.92561 0.92557 0.91215 0.91192 0.93462 0.93506
0.90830 0.91328 0.93029 0.90138 0.91720 0.95856 0.96330 0.95731
0.92933 0.90120 0.93132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16
2 C -0.12 -1.09 6.30 -26.73 -0.17 -1.26 16
3 C 0.06 0.64 5.77 37.16 0.21 0.85 16
4 O -0.38 -5.23 10.08 -35.23 -0.36 -5.58 16
5 C 0.09 1.21 3.56 -24.87 -0.09 1.12 16
6 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16
7 C -0.15 -2.20 6.69 -25.38 -0.17 -2.37 16
8 C 0.04 0.77 5.35 -2.67 -0.01 0.75 16
9 N -0.52 -9.89 5.40 -230.31 -1.24 -11.14 16
10 C 0.05 1.19 4.94 -3.82 -0.02 1.17 16
11 C 0.02 0.64 4.72 -27.88 -0.13 0.50 16
12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16
13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16
14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
15 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16
16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16
17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
20 C 0.04 0.61 6.27 -1.90 -0.01 0.60 16
21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
26 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16
27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
28 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16
29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.05 1.00 7.14 -51.93 -0.37 0.62 16
31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
32 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16
33 H 0.02 0.51 7.89 -51.93 -0.41 0.10 16
34 H 0.02 0.51 6.63 -51.93 -0.34 0.17 16
35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
38 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16
LS Contribution 306.84 15.07 4.62 4.62
Total: -1.00 -30.46 306.84 -8.66 -39.13
By element:
Atomic # 1 Polarization: 2.54 SS G_CDS: -6.97 Total: -4.43 kcal
Atomic # 6 Polarization: -12.63 SS G_CDS: -0.43 Total: -13.06 kcal
Atomic # 7 Polarization: -37.03 SS G_CDS: -0.51 Total: -37.54 kcal
Atomic # 8 Polarization: -5.23 SS G_CDS: -0.36 Total: -5.58 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -30.46 -8.66 -39.13 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701708439.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.683 kcal
(2) G-P(sol) polarization free energy of solvation -30.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds