Wall clock time and date at job start Mon Mar 30 2020 04:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 O 1.42899 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.64295 * 26.85424 * 5 4 3 7 7 C 1.54593 * 110.72702 * 263.50517 * 5 4 3 8 8 C 1.53988 * 105.13853 * 219.68534 * 7 5 4 9 9 N 1.48064 * 107.14543 * 358.91767 * 8 7 5 10 10 C 1.46902 * 111.16437 * 145.63064 * 9 8 7 11 11 C 1.53003 * 109.46914 * 52.60365 * 10 9 8 12 12 C 1.50695 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00226 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99706 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99784 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47062 * 60.00283 * 16 14 12 18 18 H 1.48500 * 109.46780 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47333 * 299.99654 * 16 14 12 20 20 C 1.48537 * 105.73449 * 25.07892 * 9 8 7 21 21 H 1.08996 * 109.47389 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46742 * 300.00014 * 1 2 3 23 23 H 1.08997 * 109.47244 * 59.99505 * 1 2 3 24 24 H 1.08991 * 109.46842 * 239.99777 * 2 1 3 25 25 H 1.08997 * 109.46904 * 119.99793 * 2 1 3 26 26 H 1.09000 * 109.46827 * 59.99978 * 3 2 1 27 27 H 1.08998 * 109.46957 * 300.00702 * 3 2 1 28 28 H 1.09005 * 110.30927 * 338.60317 * 7 5 4 29 29 H 1.08997 * 110.30746 * 100.76752 * 7 5 4 30 30 H 1.09006 * 109.91426 * 118.12915 * 8 7 5 31 31 H 1.09000 * 109.91854 * 239.41907 * 8 7 5 32 32 H 1.08995 * 109.46938 * 172.60380 * 10 9 8 33 33 H 1.08994 * 109.47047 * 292.60901 * 10 9 8 34 34 H 1.08999 * 109.47096 * 300.00477 * 11 10 9 35 35 H 1.09003 * 109.46926 * 60.00144 * 11 10 9 36 36 H 0.97006 * 119.99710 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.66696 * 202.50331 * 20 9 8 38 38 H 1.09001 * 110.66368 * 79.54170 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7480 0.0001 6 1 3.3751 3.4694 0.4601 7 6 4.4229 3.1804 -1.4366 8 6 5.7744 3.9056 -1.3006 9 7 6.1275 3.9046 0.1373 10 6 7.5797 3.7890 0.3268 11 6 8.2889 4.8647 -0.4983 12 6 9.7785 4.7465 -0.3034 13 1 10.1793 3.9805 0.3438 14 6 10.6297 5.6164 -0.9514 15 7 10.1416 6.5495 -1.7392 16 14 12.4763 5.4693 -0.7104 17 1 12.9282 4.1267 -1.1557 18 1 13.1645 6.5142 -1.5102 19 1 12.8039 5.6506 0.7265 20 6 5.4195 2.7387 0.7252 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 4.5254 2.3066 -2.0802 29 1 3.6682 3.8583 -1.8353 30 1 6.5392 3.3752 -1.8681 31 1 5.6841 4.9301 -1.6615 32 1 7.8202 3.9226 1.3815 33 1 7.9113 2.8033 0.0005 34 1 8.0482 4.7312 -1.5529 35 1 7.9572 5.8504 -0.1719 36 1 10.7404 7.1617 -2.1948 37 1 5.2870 2.8705 1.7991 38 1 5.9594 1.8152 0.5159 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701708439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:07 Heat of formation + Delta-G solvation = -61.808416 kcal Electronic energy + Delta-G solvation = -15706.602883 eV Core-core repulsion = 13162.353462 eV Total energy + Delta-G solvation = -2544.249421 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.15538 -37.14095 -34.02667 -33.16141 -31.31772 -28.87717 -27.81409 -25.93180 -24.20575 -21.91552 -21.63539 -20.74526 -19.41556 -16.99173 -16.39086 -15.91301 -15.53022 -14.98003 -14.45540 -13.90760 -13.77226 -13.46297 -13.35181 -12.65125 -12.44826 -12.27076 -12.02586 -11.83411 -11.33518 -11.22659 -11.00680 -10.98541 -10.94856 -10.80333 -10.55281 -10.33436 -9.92732 -9.54340 -9.27271 -9.13645 -8.34307 -7.81558 -5.98940 -4.01423 3.34556 3.38601 3.41079 3.52436 4.44913 4.64706 4.72672 4.76772 4.93852 4.96092 5.13027 5.19543 5.28616 5.29007 5.36981 5.48338 5.53864 5.71617 5.82432 5.89470 5.92637 5.98606 6.03301 6.11755 6.24391 6.31974 6.45898 6.52199 6.92996 7.22890 7.46674 7.49300 7.74013 7.87461 8.06685 8.43748 9.05249 9.62149 11.12490 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.081979 B = 0.004025 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.469968 B = 6954.179389 C = 7105.972113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.061 3.939 4 O -0.381 6.381 5 C 0.085 3.915 6 H 0.074 0.926 7 C -0.152 4.152 8 C 0.043 3.957 9 N -0.517 5.517 10 C 0.054 3.946 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.038 3.962 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.080 0.920 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 -9.816 2.384 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.300 6.300 5 C 0.027 3.973 6 H 0.092 0.908 7 C -0.191 4.191 8 C -0.085 4.085 9 N -0.242 5.242 10 C -0.073 4.073 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.091 4.091 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.966 -9.348 2.516 19.534 hybrid contribution 1.209 -0.493 -0.354 1.353 sum -15.757 -9.842 2.162 18.703 Atomic orbital electron populations 1.21697 0.94929 1.02084 1.01995 1.21463 0.95536 0.95884 1.03284 1.22557 0.81478 0.97503 0.99996 1.87889 1.19165 1.27996 1.94965 1.23042 0.94872 0.83849 0.95540 0.90826 1.22932 0.98270 1.00571 0.97300 1.22757 0.94510 1.00909 0.90348 1.64886 1.10329 1.37601 1.11394 1.22512 0.84015 0.99453 1.01306 1.19158 0.94026 0.93519 0.94631 1.21155 0.91581 1.15618 1.27804 0.92772 1.24996 0.98858 0.95266 0.95198 1.69962 1.35010 1.18427 1.29909 0.86638 0.85359 0.77675 0.78210 1.20280 1.21271 1.20200 1.23189 0.92789 0.93801 0.99272 0.92145 0.92561 0.92557 0.91215 0.91192 0.93462 0.93506 0.90830 0.91328 0.93029 0.90138 0.91720 0.95856 0.96330 0.95731 0.92933 0.90120 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.09 6.30 -26.73 -0.17 -1.26 16 3 C 0.06 0.64 5.77 37.16 0.21 0.85 16 4 O -0.38 -5.23 10.08 -35.23 -0.36 -5.58 16 5 C 0.09 1.21 3.56 -24.87 -0.09 1.12 16 6 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 7 C -0.15 -2.20 6.69 -25.38 -0.17 -2.37 16 8 C 0.04 0.77 5.35 -2.67 -0.01 0.75 16 9 N -0.52 -9.89 5.40 -230.31 -1.24 -11.14 16 10 C 0.05 1.19 4.94 -3.82 -0.02 1.17 16 11 C 0.02 0.64 4.72 -27.88 -0.13 0.50 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.04 0.61 6.27 -1.90 -0.01 0.60 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.00 7.14 -51.93 -0.37 0.62 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.02 0.51 7.89 -51.93 -0.41 0.10 16 34 H 0.02 0.51 6.63 -51.93 -0.34 0.17 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -30.46 306.84 -8.66 -39.13 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.97 Total: -4.43 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.43 Total: -13.06 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.51 Total: -37.54 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.36 Total: -5.58 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.46 -8.66 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701708439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.683 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds