Wall clock time and date at job start Mon Mar 30 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 115.56158 * 2 1 4 4 C 1.53001 * 117.49839 * 214.30623 * 2 1 3 5 5 C 1.52998 * 60.00347 * 252.51249 * 4 2 1 6 6 C 1.52997 * 117.50034 * 252.51286 * 5 4 2 7 7 C 1.53000 * 117.50037 * 107.50977 * 5 4 2 8 8 N 1.46900 * 109.47173 * 111.25576 * 7 5 4 9 9 C 1.46894 * 111.00279 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47423 * 180.02562 * 9 8 7 11 11 O 1.42907 * 109.47171 * 64.99547 * 10 9 8 12 12 C 1.42898 * 113.99875 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46620 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00442 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99572 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00640 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99999 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47290 * 89.99776 * 17 15 13 19 19 H 1.48501 * 109.47115 * 210.00119 * 17 15 13 20 20 H 1.48494 * 109.46675 * 329.99904 * 17 15 13 21 21 H 1.08996 * 109.47190 * 274.31185 * 1 2 3 22 22 H 1.09002 * 109.46851 * 34.31545 * 1 2 3 23 23 H 1.09005 * 109.47151 * 154.31225 * 1 2 3 24 24 H 1.08998 * 117.49914 * 145.01973 * 4 2 1 25 25 H 1.09004 * 117.50034 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.47153 * 8.60463 * 6 5 4 27 27 H 1.09001 * 109.46832 * 248.60653 * 6 5 4 28 28 H 1.09004 * 109.47261 * 128.60635 * 6 5 4 29 29 H 1.09000 * 109.47550 * 231.25677 * 7 5 4 30 30 H 1.09001 * 109.46897 * 351.25667 * 7 5 4 31 31 H 1.00903 * 110.99921 * 56.04213 * 8 7 5 32 32 H 1.09005 * 109.46943 * 299.99769 * 9 8 7 33 33 H 1.08997 * 109.47278 * 59.99593 * 9 8 7 34 34 H 1.09002 * 109.47560 * 184.99673 * 10 9 8 35 35 H 1.08999 * 109.47262 * 304.99984 * 10 9 8 36 36 H 1.08994 * 109.47212 * 300.00061 * 12 11 10 37 37 H 1.08999 * 109.47014 * 60.00651 * 12 11 10 38 38 H 0.96990 * 120.00621 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7649 5 6 2.2365 -1.1210 0.7651 6 6 3.5490 -0.7759 1.4715 7 6 1.3592 -2.1565 1.4716 8 7 2.2131 -3.1454 2.1431 9 6 1.4033 -4.1581 2.8332 10 6 2.3256 -5.1677 3.5195 11 8 3.0682 -4.5114 4.5491 12 6 3.9655 -5.3700 5.2560 13 6 4.6923 -4.5773 6.3117 14 1 4.4890 -3.5234 6.4311 15 6 5.6160 -5.1978 7.1257 16 7 5.8632 -6.4813 6.9807 17 14 6.5165 -4.2154 8.4348 18 1 5.7432 -4.2539 9.7019 19 1 7.8616 -4.8039 8.6575 20 1 6.6604 -2.8074 7.9853 21 1 -0.3633 0.0773 1.0247 22 1 -0.3633 0.8488 -0.5794 23 1 -0.3634 -0.9261 -0.4455 24 1 3.1715 -0.8753 -1.2682 25 1 1.6112 -1.8584 -1.2685 26 1 4.2753 -0.4260 0.7380 27 1 3.9365 -1.6634 1.9718 28 1 3.3701 0.0074 2.2081 29 1 0.7313 -1.6577 2.2098 30 1 0.7285 -2.6592 0.7384 31 1 2.8527 -2.6966 2.7816 32 1 0.7754 -3.6734 3.5810 33 1 0.7732 -4.6747 2.1093 34 1 1.7278 -5.9677 3.9564 35 1 3.0142 -5.5877 2.7864 36 1 3.4020 -6.1744 5.7287 37 1 4.6881 -5.7937 4.5586 38 1 6.5133 -6.9178 7.5531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704272631.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:47 Heat of formation + Delta-G solvation = -38.281312 kcal Electronic energy + Delta-G solvation = -15654.700130 eV Core-core repulsion = 13111.470921 eV Total energy + Delta-G solvation = -2543.229209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.00198 -37.00219 -34.83997 -32.66714 -30.35700 -28.92884 -27.08014 -26.80314 -24.68515 -22.34361 -21.34959 -21.10584 -18.55641 -16.44463 -15.94188 -15.61277 -15.39938 -14.81856 -14.63097 -14.16822 -13.56006 -13.50296 -13.04025 -12.95250 -12.42937 -12.37532 -12.05386 -11.87681 -11.53883 -11.45800 -11.26239 -10.95027 -10.79149 -10.73581 -10.54084 -10.04424 -9.81756 -9.51717 -9.09714 -8.81324 -8.16048 -8.13133 -6.10017 -4.11900 3.30618 3.35635 3.40810 3.64427 4.35467 4.37201 4.59866 4.74780 4.91959 4.96561 5.15407 5.18301 5.26423 5.43009 5.57120 5.62325 5.66235 5.72365 5.76539 5.77930 5.88674 5.90571 6.00371 6.10281 6.15650 6.21004 6.22464 6.37566 6.45095 7.12844 7.28081 7.45365 7.69586 7.79800 8.16357 8.59012 9.01316 9.53002 11.01534 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036528 B = 0.004658 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.348146 B = 6009.721289 C = 6462.859704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.156 4.156 3 H 0.101 0.899 4 C -0.166 4.166 5 C -0.114 4.114 6 C -0.122 4.122 7 C 0.097 3.903 8 N -0.686 5.686 9 C 0.065 3.935 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.515 4.515 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.357 0.643 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.006 0.994 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 9.763 -13.057 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.174 4.174 3 H 0.119 0.881 4 C -0.203 4.203 5 C -0.114 4.114 6 C -0.180 4.180 7 C -0.032 4.032 8 N -0.321 5.321 9 C -0.064 4.064 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.553 4.553 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.015 9.418 -13.483 18.755 hybrid contribution 0.233 0.521 1.349 1.465 sum -8.783 9.938 -12.134 17.976 Atomic orbital electron populations 1.21331 0.93145 1.01665 1.01724 1.22472 0.95108 0.94460 1.05395 0.88082 1.23235 1.02177 1.00880 0.93981 1.21520 0.98071 0.98422 0.93403 1.21384 0.94288 1.02231 1.00058 1.21372 0.93604 0.91274 0.96937 1.60565 1.19461 1.16164 1.35936 1.21943 0.94920 0.93925 0.95635 1.22297 0.94285 0.94176 0.90833 1.87783 1.57219 1.38386 1.48602 1.20177 0.87016 0.89950 0.90602 1.21054 1.21707 0.96568 1.15967 0.91630 1.24945 0.96733 0.95083 0.97708 1.69961 1.34635 1.09569 1.39598 0.86347 0.78768 0.80076 0.81360 1.20506 1.21065 1.19631 0.92285 0.92467 0.92576 0.89080 0.88999 0.92614 0.90256 0.92557 0.95208 0.91369 0.82121 0.94872 0.90812 0.94169 0.93536 0.97831 0.97590 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.22 37.16 0.34 -0.72 16 2 C -0.16 -1.55 6.13 -90.61 -0.56 -2.11 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.17 -1.74 9.47 -26.73 -0.25 -1.99 16 5 C -0.11 -1.34 2.57 -154.51 -0.40 -1.74 16 6 C -0.12 -1.51 9.53 37.16 0.35 -1.16 16 7 C 0.10 1.24 4.89 -3.82 -0.02 1.23 16 8 N -0.69 -10.61 6.12 -113.78 -0.70 -11.31 16 9 C 0.06 1.01 6.11 -3.83 -0.02 0.99 16 10 C 0.06 1.18 6.28 37.16 0.23 1.41 16 11 O -0.40 -9.66 9.85 -35.23 -0.35 -10.00 16 12 C 0.20 5.46 5.69 36.01 0.20 5.66 16 13 C -0.51 -15.23 9.43 -34.44 -0.32 -15.55 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 17 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H 0.06 0.52 8.03 -51.93 -0.42 0.11 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.48 7.77 -51.93 -0.40 0.07 16 24 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 25 H 0.09 0.93 7.96 -51.93 -0.41 0.51 16 26 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 27 H 0.08 1.12 5.83 -51.93 -0.30 0.82 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.38 8.03 -51.93 -0.42 -0.03 16 30 H 0.07 0.82 7.77 -51.93 -0.40 0.41 16 31 H 0.36 6.08 6.10 -39.29 -0.24 5.84 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -30.43 311.71 -7.94 -38.36 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.77 Total: 0.13 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.53 Total: -12.42 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.04 Total: -37.65 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.43 -7.94 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704272631.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.083 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds