Wall clock time and date at job start Mon Mar 30 2020 05:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 115.56158 * 2 1
4 4 C 1.53001 * 117.49839 * 214.30623 * 2 1 3
5 5 C 1.52998 * 60.00347 * 252.51249 * 4 2 1
6 6 C 1.52997 * 117.50034 * 252.51286 * 5 4 2
7 7 C 1.53000 * 117.50037 * 107.50977 * 5 4 2
8 8 N 1.46900 * 109.47173 * 111.25576 * 7 5 4
9 9 C 1.46894 * 111.00279 * 180.02562 * 8 7 5
10 10 C 1.53000 * 109.47423 * 180.02562 * 9 8 7
11 11 O 1.42907 * 109.47171 * 64.99547 * 10 9 8
12 12 C 1.42898 * 113.99875 * 180.02562 * 11 10 9
13 13 C 1.50705 * 109.46620 * 179.97438 * 12 11 10
14 14 H 1.07994 * 120.00442 * 0.02562 * 13 12 11
15 15 C 1.37871 * 119.99572 * 179.97438 * 13 12 11
16 16 N 1.31517 * 120.00640 * 0.02562 * 15 13 12
17 17 Si 1.86808 * 119.99999 * 180.02562 * 15 13 12
18 18 H 1.48496 * 109.47290 * 89.99776 * 17 15 13
19 19 H 1.48501 * 109.47115 * 210.00119 * 17 15 13
20 20 H 1.48494 * 109.46675 * 329.99904 * 17 15 13
21 21 H 1.08996 * 109.47190 * 274.31185 * 1 2 3
22 22 H 1.09002 * 109.46851 * 34.31545 * 1 2 3
23 23 H 1.09005 * 109.47151 * 154.31225 * 1 2 3
24 24 H 1.08998 * 117.49914 * 145.01973 * 4 2 1
25 25 H 1.09004 * 117.50034 * 0.02562 * 4 2 1
26 26 H 1.09002 * 109.47153 * 8.60463 * 6 5 4
27 27 H 1.09001 * 109.46832 * 248.60653 * 6 5 4
28 28 H 1.09004 * 109.47261 * 128.60635 * 6 5 4
29 29 H 1.09000 * 109.47550 * 231.25677 * 7 5 4
30 30 H 1.09001 * 109.46897 * 351.25667 * 7 5 4
31 31 H 1.00903 * 110.99921 * 56.04213 * 8 7 5
32 32 H 1.09005 * 109.46943 * 299.99769 * 9 8 7
33 33 H 1.08997 * 109.47278 * 59.99593 * 9 8 7
34 34 H 1.09002 * 109.47560 * 184.99673 * 10 9 8
35 35 H 1.08999 * 109.47262 * 304.99984 * 10 9 8
36 36 H 1.08994 * 109.47212 * 300.00061 * 12 11 10
37 37 H 1.08999 * 109.47014 * 60.00651 * 12 11 10
38 38 H 0.96990 * 120.00621 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0003 0.9833 0.0000
4 6 2.2365 -1.1211 -0.7649
5 6 2.2365 -1.1210 0.7651
6 6 3.5490 -0.7759 1.4715
7 6 1.3592 -2.1565 1.4716
8 7 2.2131 -3.1454 2.1431
9 6 1.4033 -4.1581 2.8332
10 6 2.3256 -5.1677 3.5195
11 8 3.0682 -4.5114 4.5491
12 6 3.9655 -5.3700 5.2560
13 6 4.6923 -4.5773 6.3117
14 1 4.4890 -3.5234 6.4311
15 6 5.6160 -5.1978 7.1257
16 7 5.8632 -6.4813 6.9807
17 14 6.5165 -4.2154 8.4348
18 1 5.7432 -4.2539 9.7019
19 1 7.8616 -4.8039 8.6575
20 1 6.6604 -2.8074 7.9853
21 1 -0.3633 0.0773 1.0247
22 1 -0.3633 0.8488 -0.5794
23 1 -0.3634 -0.9261 -0.4455
24 1 3.1715 -0.8753 -1.2682
25 1 1.6112 -1.8584 -1.2685
26 1 4.2753 -0.4260 0.7380
27 1 3.9365 -1.6634 1.9718
28 1 3.3701 0.0074 2.2081
29 1 0.7313 -1.6577 2.2098
30 1 0.7285 -2.6592 0.7384
31 1 2.8527 -2.6966 2.7816
32 1 0.7754 -3.6734 3.5810
33 1 0.7732 -4.6747 2.1093
34 1 1.7278 -5.9677 3.9564
35 1 3.0142 -5.5877 2.7864
36 1 3.4020 -6.1744 5.7287
37 1 4.6881 -5.7937 4.5586
38 1 6.5133 -6.9178 7.5531
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000704272631.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:47
Heat of formation + Delta-G solvation = -38.281312 kcal
Electronic energy + Delta-G solvation = -15654.700130 eV
Core-core repulsion = 13111.470921 eV
Total energy + Delta-G solvation = -2543.229209 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.00198 -37.00219 -34.83997 -32.66714 -30.35700 -28.92884 -27.08014 -26.80314
-24.68515 -22.34361 -21.34959 -21.10584 -18.55641 -16.44463 -15.94188 -15.61277
-15.39938 -14.81856 -14.63097 -14.16822 -13.56006 -13.50296 -13.04025 -12.95250
-12.42937 -12.37532 -12.05386 -11.87681 -11.53883 -11.45800 -11.26239 -10.95027
-10.79149 -10.73581 -10.54084 -10.04424 -9.81756 -9.51717 -9.09714 -8.81324
-8.16048 -8.13133 -6.10017 -4.11900 3.30618 3.35635 3.40810 3.64427
4.35467 4.37201 4.59866 4.74780 4.91959 4.96561 5.15407 5.18301
5.26423 5.43009 5.57120 5.62325 5.66235 5.72365 5.76539 5.77930
5.88674 5.90571 6.00371 6.10281 6.15650 6.21004 6.22464 6.37566
6.45095 7.12844 7.28081 7.45365 7.69586 7.79800 8.16357 8.59012
9.01316 9.53002 11.01534
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.036528 B = 0.004658 C = 0.004331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 766.348146 B = 6009.721289 C = 6462.859704
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.156 4.156
3 H 0.101 0.899
4 C -0.166 4.166
5 C -0.114 4.114
6 C -0.122 4.122
7 C 0.097 3.903
8 N -0.686 5.686
9 C 0.065 3.935
10 C 0.062 3.938
11 O -0.400 6.400
12 C 0.197 3.803
13 C -0.515 4.515
14 H 0.065 0.935
15 C 0.056 3.944
16 N -0.898 5.898
17 Si 0.907 3.093
18 H -0.279 1.279
19 H -0.285 1.285
20 H -0.272 1.272
21 H 0.058 0.942
22 H 0.056 0.944
23 H 0.055 0.945
24 H 0.091 0.909
25 H 0.092 0.908
26 H 0.055 0.945
27 H 0.079 0.921
28 H 0.055 0.945
29 H 0.030 0.970
30 H 0.068 0.932
31 H 0.357 0.643
32 H 0.033 0.967
33 H 0.074 0.926
34 H 0.040 0.960
35 H 0.046 0.954
36 H 0.004 0.996
37 H 0.006 0.994
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.201 9.763 -13.057 18.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.174 4.174
3 H 0.119 0.881
4 C -0.203 4.203
5 C -0.114 4.114
6 C -0.180 4.180
7 C -0.032 4.032
8 N -0.321 5.321
9 C -0.064 4.064
10 C -0.016 4.016
11 O -0.320 6.320
12 C 0.123 3.877
13 C -0.553 4.553
14 H 0.084 0.916
15 C -0.145 4.145
16 N -0.538 5.538
17 Si 0.734 3.266
18 H -0.205 1.205
19 H -0.211 1.211
20 H -0.196 1.196
21 H 0.077 0.923
22 H 0.075 0.925
23 H 0.074 0.926
24 H 0.109 0.891
25 H 0.110 0.890
26 H 0.074 0.926
27 H 0.097 0.903
28 H 0.074 0.926
29 H 0.048 0.952
30 H 0.086 0.914
31 H 0.179 0.821
32 H 0.051 0.949
33 H 0.092 0.908
34 H 0.058 0.942
35 H 0.065 0.935
36 H 0.022 0.978
37 H 0.024 0.976
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -9.015 9.418 -13.483 18.755
hybrid contribution 0.233 0.521 1.349 1.465
sum -8.783 9.938 -12.134 17.976
Atomic orbital electron populations
1.21331 0.93145 1.01665 1.01724 1.22472 0.95108 0.94460 1.05395
0.88082 1.23235 1.02177 1.00880 0.93981 1.21520 0.98071 0.98422
0.93403 1.21384 0.94288 1.02231 1.00058 1.21372 0.93604 0.91274
0.96937 1.60565 1.19461 1.16164 1.35936 1.21943 0.94920 0.93925
0.95635 1.22297 0.94285 0.94176 0.90833 1.87783 1.57219 1.38386
1.48602 1.20177 0.87016 0.89950 0.90602 1.21054 1.21707 0.96568
1.15967 0.91630 1.24945 0.96733 0.95083 0.97708 1.69961 1.34635
1.09569 1.39598 0.86347 0.78768 0.80076 0.81360 1.20506 1.21065
1.19631 0.92285 0.92467 0.92576 0.89080 0.88999 0.92614 0.90256
0.92557 0.95208 0.91369 0.82121 0.94872 0.90812 0.94169 0.93536
0.97831 0.97590 0.92656
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.06 9.22 37.16 0.34 -0.72 16
2 C -0.16 -1.55 6.13 -90.61 -0.56 -2.11 16
3 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16
4 C -0.17 -1.74 9.47 -26.73 -0.25 -1.99 16
5 C -0.11 -1.34 2.57 -154.51 -0.40 -1.74 16
6 C -0.12 -1.51 9.53 37.16 0.35 -1.16 16
7 C 0.10 1.24 4.89 -3.82 -0.02 1.23 16
8 N -0.69 -10.61 6.12 -113.78 -0.70 -11.31 16
9 C 0.06 1.01 6.11 -3.83 -0.02 0.99 16
10 C 0.06 1.18 6.28 37.16 0.23 1.41 16
11 O -0.40 -9.66 9.85 -35.23 -0.35 -10.00 16
12 C 0.20 5.46 5.69 36.01 0.20 5.66 16
13 C -0.51 -15.23 9.43 -34.44 -0.32 -15.55 16
14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16
15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
16 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16
17 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16
18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16
19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
21 H 0.06 0.52 8.03 -51.93 -0.42 0.11 16
22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
23 H 0.06 0.48 7.77 -51.93 -0.40 0.07 16
24 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16
25 H 0.09 0.93 7.96 -51.93 -0.41 0.51 16
26 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16
27 H 0.08 1.12 5.83 -51.93 -0.30 0.82 16
28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.03 0.38 8.03 -51.93 -0.42 -0.03 16
30 H 0.07 0.82 7.77 -51.93 -0.40 0.41 16
31 H 0.36 6.08 6.10 -39.29 -0.24 5.84 16
32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16
37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16
38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
LS Contribution 311.71 15.07 4.70 4.70
Total: -1.00 -30.43 311.71 -7.94 -38.36
By element:
Atomic # 1 Polarization: 6.90 SS G_CDS: -6.77 Total: 0.13 kcal
Atomic # 6 Polarization: -11.89 SS G_CDS: -0.53 Total: -12.42 kcal
Atomic # 7 Polarization: -37.69 SS G_CDS: 0.04 Total: -37.65 kcal
Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.00 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -30.43 -7.94 -38.36 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000704272631.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.083 kcal
(2) G-P(sol) polarization free energy of solvation -30.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.281 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds