Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 115.56211 * 2 1 4 4 C 1.52999 * 117.49619 * 145.68103 * 2 1 3 5 5 C 1.52995 * 117.50024 * 214.30480 * 2 1 3 6 6 C 1.53006 * 117.49917 * 0.02562 * 5 2 1 7 7 C 1.53000 * 117.51914 * 145.02891 * 5 2 1 8 8 N 1.46901 * 109.47250 * 179.88005 * 7 5 2 9 9 C 1.46899 * 110.99853 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47016 * 180.02562 * 9 8 7 11 11 O 1.42894 * 109.46799 * 65.00750 * 10 9 8 12 12 C 1.42905 * 113.99884 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47252 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99697 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99861 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99845 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47290 * 60.00410 * 17 15 13 19 19 H 1.48507 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47463 * 299.99773 * 17 15 13 21 21 H 1.08999 * 109.46866 * 205.68759 * 1 2 3 22 22 H 1.08994 * 109.46704 * 325.69368 * 1 2 3 23 23 H 1.09007 * 109.46607 * 85.69422 * 1 2 3 24 24 H 1.08998 * 117.50414 * 0.02562 * 4 2 1 25 25 H 1.08997 * 117.51796 * 214.96939 * 4 2 1 26 26 H 1.09001 * 109.47002 * 299.98149 * 6 5 2 27 27 H 1.08993 * 109.46955 * 59.98586 * 6 5 2 28 28 H 1.09000 * 109.47050 * 179.97438 * 6 5 2 29 29 H 1.08998 * 109.47348 * 299.88643 * 7 5 2 30 30 H 1.09008 * 109.46925 * 59.88624 * 7 5 2 31 31 H 1.00904 * 110.99822 * 56.05218 * 8 7 5 32 32 H 1.08998 * 109.47651 * 300.00472 * 9 8 7 33 33 H 1.09005 * 109.46972 * 60.00904 * 9 8 7 34 34 H 1.09001 * 109.46849 * 185.00330 * 10 9 8 35 35 H 1.08998 * 109.46860 * 305.00446 * 10 9 8 36 36 H 1.08997 * 109.47048 * 299.99950 * 12 11 10 37 37 H 1.09000 * 109.47268 * 59.99511 * 12 11 10 38 38 H 0.97001 * 119.99804 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1209 0.7652 5 6 2.2365 -1.1210 -0.7648 6 6 1.3589 -2.1560 -1.4717 7 6 3.5492 -0.7766 -1.4713 8 7 4.0729 -1.9737 -2.1426 9 6 5.3354 -1.6799 -2.8337 10 6 5.8483 -2.9477 -3.5197 11 8 4.9354 -3.3350 -4.5486 12 6 5.3228 -4.5152 -5.2553 13 6 4.2937 -4.8296 -6.3103 14 1 3.4299 -4.1922 -6.4290 15 6 4.4548 -5.9309 -7.1240 16 7 5.5064 -6.7073 -6.9790 17 14 3.1788 -6.3210 -8.4312 18 1 3.0802 -5.1842 -9.3816 19 1 3.5814 -7.5473 -9.1656 20 1 1.8600 -6.5421 -7.7854 21 1 -0.3633 -0.9261 0.4455 22 1 -0.3632 0.8489 0.5792 23 1 -0.3633 0.0772 -1.0249 24 1 1.6113 -1.8586 1.2682 25 1 3.1716 -0.8754 1.2684 26 1 0.7295 -2.6602 -0.7384 27 1 0.7298 -1.6565 -2.2084 28 1 1.9923 -2.8885 -1.9720 29 1 3.3703 0.0050 -2.2096 30 1 4.2749 -0.4245 -0.7381 31 1 3.3922 -2.3571 -2.7812 32 1 5.1684 -0.9047 -3.5816 33 1 6.0737 -1.3339 -2.1102 34 1 6.8275 -2.7533 -3.9571 35 1 5.9307 -3.7497 -2.7862 36 1 6.2913 -4.3538 -5.7286 37 1 5.3940 -5.3496 -4.5575 38 1 5.6195 -7.4824 -7.5512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704272638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = -38.252568 kcal Electronic energy + Delta-G solvation = -15616.308655 eV Core-core repulsion = 13073.080693 eV Total energy + Delta-G solvation = -2543.227962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.97843 -37.01783 -34.91218 -32.67402 -30.21318 -28.33128 -27.97234 -26.76854 -24.50303 -22.34211 -21.35787 -21.00173 -18.56032 -16.51439 -16.03190 -15.65027 -15.39409 -14.81293 -14.38945 -14.14453 -13.81114 -13.37217 -13.19429 -12.87593 -12.62504 -12.04445 -12.02725 -11.88745 -11.57332 -11.40643 -11.25788 -10.95195 -10.80920 -10.73426 -10.55833 -10.05183 -9.80349 -9.53501 -9.10813 -8.80900 -8.15990 -8.13701 -6.09836 -4.11774 3.32562 3.35324 3.38987 3.64455 4.31725 4.35660 4.71434 4.76415 4.86690 4.96516 5.15869 5.19535 5.26531 5.40792 5.58089 5.62295 5.66640 5.73202 5.76185 5.79612 5.88766 5.91454 6.01190 6.10317 6.16685 6.20417 6.22223 6.37425 6.47114 7.12852 7.27454 7.45405 7.69167 7.79603 8.16488 8.59106 9.01054 9.53026 11.01684 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032074 B = 0.004761 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.764533 B = 5879.481984 C = 6519.520599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 H 0.099 0.901 4 C -0.166 4.166 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.096 3.904 8 N -0.686 5.686 9 C 0.065 3.935 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.516 4.516 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.357 0.643 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.006 0.994 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 11.932 13.035 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 H 0.117 0.883 4 C -0.203 4.203 5 C -0.114 4.114 6 C -0.178 4.178 7 C -0.034 4.034 8 N -0.320 5.320 9 C -0.065 4.065 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.502 11.610 13.458 18.605 hybrid contribution -0.493 0.075 -1.340 1.430 sum -5.995 11.685 12.118 17.869 Atomic orbital electron populations 1.21314 0.92987 1.01604 1.01753 1.22448 0.95220 0.94380 1.05400 0.88265 1.23233 1.02094 1.00961 0.93985 1.21522 0.97029 0.99440 0.93390 1.21350 0.98614 0.97782 1.00021 1.21411 0.93424 0.91583 0.96975 1.60583 1.07002 1.28540 1.35915 1.21950 0.92265 0.96603 0.95639 1.22295 0.92783 0.95668 0.90842 1.87781 1.47818 1.47747 1.48653 1.20171 0.95790 0.81150 0.90588 1.21016 1.07821 1.10455 1.16088 0.91684 1.24941 0.96089 0.95717 0.97696 1.69955 1.28072 1.16050 1.39686 0.86402 0.81328 0.77644 0.81127 1.20062 1.21149 1.20000 0.92536 0.92560 0.92224 0.89006 0.89089 0.92608 0.92542 0.90367 0.95239 0.91372 0.82107 0.94858 0.90801 0.94166 0.93534 0.97836 0.97603 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.21 37.16 0.34 -0.71 16 2 C -0.16 -1.55 6.13 -90.62 -0.56 -2.11 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.17 -1.73 9.47 -26.73 -0.25 -1.99 16 5 C -0.11 -1.33 2.57 -154.51 -0.40 -1.73 16 6 C -0.12 -1.48 8.56 37.16 0.32 -1.16 16 7 C 0.10 1.22 5.87 -3.82 -0.02 1.20 16 8 N -0.69 -10.60 6.12 -113.77 -0.70 -11.29 16 9 C 0.06 1.01 6.10 -3.82 -0.02 0.99 16 10 C 0.06 1.18 6.28 37.16 0.23 1.42 16 11 O -0.40 -9.67 9.84 -35.23 -0.35 -10.01 16 12 C 0.20 5.47 5.69 36.01 0.20 5.68 16 13 C -0.52 -15.25 9.43 -34.44 -0.32 -15.58 16 14 H 0.06 1.90 7.81 -52.48 -0.41 1.49 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 17 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H 0.06 0.49 7.77 -51.93 -0.40 0.08 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.53 8.02 -51.92 -0.42 0.11 16 24 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 25 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 26 H 0.05 0.63 7.78 -51.93 -0.40 0.22 16 27 H 0.06 0.66 8.02 -51.93 -0.42 0.25 16 28 H 0.08 1.11 5.83 -51.93 -0.30 0.81 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.81 7.90 -51.92 -0.41 0.40 16 31 H 0.36 6.08 6.10 -39.29 -0.24 5.84 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -30.40 311.69 -7.98 -38.38 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.77 Total: 0.14 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -0.57 Total: -12.44 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.04 Total: -37.64 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.35 Total: -10.01 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.40 -7.98 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704272638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.124 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds