Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 115.56211 * 2 1 4 4 C 1.52999 * 117.49619 * 145.68103 * 2 1 3 5 5 C 1.52995 * 117.50024 * 214.30480 * 2 1 3 6 6 C 1.53006 * 117.49917 * 0.02562 * 5 2 1 7 7 C 1.53000 * 117.51914 * 145.02891 * 5 2 1 8 8 N 1.46901 * 109.47250 * 179.88005 * 7 5 2 9 9 C 1.46899 * 110.99853 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47016 * 180.02562 * 9 8 7 11 11 O 1.42894 * 109.46799 * 65.00750 * 10 9 8 12 12 C 1.42905 * 113.99884 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47252 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99697 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99861 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99845 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47290 * 60.00410 * 17 15 13 19 19 H 1.48507 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47463 * 299.99773 * 17 15 13 21 21 H 1.08999 * 109.46866 * 205.68759 * 1 2 3 22 22 H 1.08994 * 109.46704 * 325.69368 * 1 2 3 23 23 H 1.09007 * 109.46607 * 85.69422 * 1 2 3 24 24 H 1.08998 * 117.50414 * 0.02562 * 4 2 1 25 25 H 1.08997 * 117.51796 * 214.96939 * 4 2 1 26 26 H 1.09001 * 109.47002 * 299.98149 * 6 5 2 27 27 H 1.08993 * 109.46955 * 59.98586 * 6 5 2 28 28 H 1.09000 * 109.47050 * 179.97438 * 6 5 2 29 29 H 1.08998 * 109.47348 * 299.88643 * 7 5 2 30 30 H 1.09008 * 109.46925 * 59.88624 * 7 5 2 31 31 H 1.00904 * 110.99822 * 56.05218 * 8 7 5 32 32 H 1.08998 * 109.47651 * 300.00472 * 9 8 7 33 33 H 1.09005 * 109.46972 * 60.00904 * 9 8 7 34 34 H 1.09001 * 109.46849 * 185.00330 * 10 9 8 35 35 H 1.08998 * 109.46860 * 305.00446 * 10 9 8 36 36 H 1.08997 * 109.47048 * 299.99950 * 12 11 10 37 37 H 1.09000 * 109.47268 * 59.99511 * 12 11 10 38 38 H 0.97001 * 119.99804 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1209 0.7652 5 6 2.2365 -1.1210 -0.7648 6 6 1.3589 -2.1560 -1.4717 7 6 3.5492 -0.7766 -1.4713 8 7 4.0729 -1.9737 -2.1426 9 6 5.3354 -1.6799 -2.8337 10 6 5.8483 -2.9477 -3.5197 11 8 4.9354 -3.3350 -4.5486 12 6 5.3228 -4.5152 -5.2553 13 6 4.2937 -4.8296 -6.3103 14 1 3.4299 -4.1922 -6.4290 15 6 4.4548 -5.9309 -7.1240 16 7 5.5064 -6.7073 -6.9790 17 14 3.1788 -6.3210 -8.4312 18 1 3.0802 -5.1842 -9.3816 19 1 3.5814 -7.5473 -9.1656 20 1 1.8600 -6.5421 -7.7854 21 1 -0.3633 -0.9261 0.4455 22 1 -0.3632 0.8489 0.5792 23 1 -0.3633 0.0772 -1.0249 24 1 1.6113 -1.8586 1.2682 25 1 3.1716 -0.8754 1.2684 26 1 0.7295 -2.6602 -0.7384 27 1 0.7298 -1.6565 -2.2084 28 1 1.9923 -2.8885 -1.9720 29 1 3.3703 0.0050 -2.2096 30 1 4.2749 -0.4245 -0.7381 31 1 3.3922 -2.3571 -2.7812 32 1 5.1684 -0.9047 -3.5816 33 1 6.0737 -1.3339 -2.1102 34 1 6.8275 -2.7533 -3.9571 35 1 5.9307 -3.7497 -2.7862 36 1 6.2913 -4.3538 -5.7286 37 1 5.3940 -5.3496 -4.5575 38 1 5.6195 -7.4824 -7.5512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704272638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = -57.458340 kcal Electronic energy + Delta-G solvation = -15617.141480 eV Core-core repulsion = 13073.080693 eV Total energy + Delta-G solvation = -2544.060787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90228 -38.74231 -36.26894 -34.84118 -31.42842 -29.71994 -28.84868 -28.59016 -25.65409 -24.51858 -22.74056 -21.83566 -19.46654 -18.64101 -17.58237 -17.08744 -16.81010 -16.42854 -15.91222 -15.47791 -15.12273 -14.68614 -14.38610 -14.01512 -13.78374 -13.40936 -13.30435 -13.11675 -12.84681 -12.78860 -12.63760 -12.55948 -12.33107 -12.23070 -11.93985 -11.76308 -11.30033 -10.87731 -10.69043 -10.40668 -10.23736 -9.32259 -8.32156 -6.44959 1.40019 1.44846 1.53231 2.34571 2.78259 3.01751 3.20294 3.26591 3.80556 3.88198 4.00316 4.17468 4.22730 4.35799 4.47005 4.51149 4.62186 4.65328 4.79555 4.83384 4.90427 4.94348 4.95357 4.98953 5.03118 5.06739 5.17339 5.18223 5.26065 5.41103 5.52788 5.54085 5.95143 6.11483 6.38867 6.52454 6.80617 7.27010 8.80113 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032074 B = 0.004761 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.764533 B = 5879.481984 C = 6519.520599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.143 4.143 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.133 4.133 6 C -0.117 4.117 7 C 0.098 3.902 8 N -0.695 5.695 9 C 0.073 3.927 10 C 0.054 3.946 11 O -0.409 6.409 12 C 0.211 3.789 13 C -0.549 4.549 14 H 0.063 0.937 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.265 1.265 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.345 0.655 32 H 0.032 0.968 33 H 0.104 0.896 34 H 0.049 0.951 35 H 0.043 0.957 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 12.889 13.346 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 H 0.127 0.873 4 C -0.200 4.200 5 C -0.134 4.134 6 C -0.174 4.174 7 C -0.031 4.031 8 N -0.329 5.329 9 C -0.056 4.056 10 C -0.023 4.023 11 O -0.329 6.329 12 C 0.136 3.864 13 C -0.587 4.587 14 H 0.081 0.919 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.190 1.190 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.051 0.949 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.518 12.590 13.797 19.783 hybrid contribution -0.120 -0.193 -1.352 1.371 sum -6.637 12.397 12.445 18.778 Atomic orbital electron populations 1.21343 0.92156 1.02325 1.01905 1.22539 0.95867 0.94248 1.03481 0.87329 1.23297 1.02567 1.01279 0.92904 1.21498 0.96925 1.00771 0.94168 1.21285 0.98423 0.97568 1.00161 1.21454 0.94250 0.90388 0.96973 1.60632 1.06724 1.30075 1.35476 1.21922 0.93192 0.94349 0.96097 1.22608 0.92756 0.97236 0.89707 1.87748 1.49314 1.46134 1.49744 1.19798 0.94687 0.81793 0.90117 1.21361 1.08419 1.11457 1.17455 0.91914 1.25966 0.98337 0.95009 0.99856 1.70068 1.29840 1.16448 1.40677 0.85232 0.78375 0.77907 0.77886 1.18983 1.19992 1.18963 0.92515 0.91068 0.92478 0.88717 0.88496 0.91838 0.92503 0.92751 0.95298 0.90137 0.83487 0.94946 0.87753 0.93238 0.93916 0.99709 0.99772 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.21 71.98 0.66 -1.20 16 2 C -0.14 -2.53 6.13 -10.79 -0.07 -2.60 16 3 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.16 -3.11 9.47 30.59 0.29 -2.82 16 5 C -0.13 -2.96 2.57 -52.18 -0.13 -3.10 16 6 C -0.12 -2.85 8.56 71.98 0.62 -2.23 16 7 C 0.10 2.38 5.87 86.30 0.51 2.88 16 8 N -0.70 -21.17 6.12 -513.87 -3.14 -24.31 16 9 C 0.07 2.22 6.10 86.30 0.53 2.75 16 10 C 0.05 2.07 6.28 71.98 0.45 2.53 16 11 O -0.41 -20.25 9.84 -148.98 -1.47 -21.71 16 12 C 0.21 12.10 5.69 71.24 0.41 12.51 16 13 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 14 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 17 Si 0.98 44.57 29.54 68.60 2.03 46.59 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H 0.06 0.87 7.77 -2.39 -0.02 0.86 16 22 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.92 8.02 -2.38 -0.02 0.90 16 24 H 0.09 1.74 7.96 -2.39 -0.02 1.72 16 25 H 0.10 1.72 8.05 -2.39 -0.02 1.70 16 26 H 0.06 1.39 7.78 -2.39 -0.02 1.38 16 27 H 0.06 1.33 8.02 -2.39 -0.02 1.31 16 28 H 0.05 1.58 5.83 -2.39 -0.01 1.57 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.74 7.90 -2.38 -0.02 1.72 16 31 H 0.34 11.94 6.10 -89.69 -0.55 11.40 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 37 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -64.91 311.69 2.12 -62.79 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.46 Total: 16.21 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.96 Total: -23.25 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.86 Total: -80.62 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.47 Total: -21.71 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.91 2.12 -62.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704272638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.329 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds