Wall clock time and date at job start Mon Mar 30 2020 05:12:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.45815 * 2 1
4 4 C 1.53039 * 109.45896 * 240.02453 * 2 1 3
5 5 C 1.53123 * 109.31189 * 299.14178 * 4 2 1
6 6 O 1.42896 * 109.52132 * 182.46557 * 5 4 2
7 7 C 1.42901 * 113.99723 * 210.00239 * 6 5 4
8 8 C 1.50700 * 109.47452 * 179.97438 * 7 6 5
9 9 H 1.08006 * 119.99744 * 0.02562 * 8 7 6
10 10 C 1.37873 * 120.00272 * 179.97438 * 8 7 6
11 11 N 1.31508 * 120.00159 * 359.97438 * 10 8 7
12 12 Si 1.86799 * 119.99881 * 180.02562 * 10 8 7
13 13 H 1.48501 * 109.47460 * 359.97438 * 12 10 8
14 14 H 1.48504 * 109.47469 * 119.99955 * 12 10 8
15 15 H 1.48507 * 109.47028 * 240.00069 * 12 10 8
16 16 C 1.53129 * 109.15931 * 302.40768 * 5 4 2
17 17 C 1.53036 * 109.30712 * 57.59477 * 16 5 4
18 18 H 1.09002 * 109.45657 * 60.85248 * 17 16 5
19 19 C 1.53006 * 109.46167 * 180.82822 * 17 16 5
20 20 N 1.46842 * 109.46283 * 119.97418 * 2 1 3
21 21 C 1.46910 * 110.99703 * 294.17538 * 20 2 1
22 22 H 1.09003 * 109.47228 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.47473 * 299.97705 * 1 2 3
24 24 H 1.08997 * 109.47715 * 59.97734 * 1 2 3
25 25 H 1.09002 * 109.50563 * 59.10510 * 4 2 1
26 26 H 1.09003 * 109.50107 * 179.18492 * 4 2 1
27 27 H 1.09000 * 109.52057 * 62.27355 * 5 4 2
28 28 H 1.09003 * 109.46880 * 299.99804 * 7 6 5
29 29 H 1.08995 * 109.47629 * 59.99471 * 7 6 5
30 30 H 0.97003 * 120.00254 * 180.02562 * 11 10 8
31 31 H 1.09000 * 109.46579 * 297.65836 * 16 5 4
32 32 H 1.08997 * 109.53656 * 177.57437 * 16 5 4
33 33 H 1.08993 * 109.46913 * 180.02562 * 19 17 16
34 34 H 1.09000 * 109.46466 * 300.05540 * 19 17 16
35 35 H 1.08996 * 109.47097 * 60.05056 * 19 17 16
36 36 H 1.08993 * 109.46992 * 60.00241 * 21 20 2
37 37 H 1.08996 * 109.47228 * 180.02562 * 21 20 2
38 38 H 1.09000 * 109.46908 * 299.99999 * 21 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0398 -0.7210 -1.2500
5 6 1.5450 -2.1700 -1.2360
6 8 2.0658 -2.8633 -2.3718
7 6 1.2199 -3.9103 -2.8517
8 6 1.8634 -4.5692 -4.0445
9 1 2.8227 -4.2233 -4.4003
10 6 1.2280 -5.6143 -4.6810
11 7 0.0607 -6.0365 -4.2469
12 14 2.0261 -6.4314 -6.1591
13 1 3.3276 -5.7757 -6.4445
14 1 2.2495 -7.8705 -5.8686
15 1 1.1353 -6.2972 -7.3398
16 6 2.0269 -2.8533 0.0469
17 6 1.5173 -2.0705 1.2591
18 1 0.4274 -2.0607 1.2531
19 6 2.0141 -2.7385 2.5429
20 7 2.0193 -0.6917 1.1993
21 6 1.6651 0.0507 2.4165
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3634 0.5135 0.8902
24 1 -0.3634 0.5141 -0.8897
25 1 1.6637 -0.2165 -2.1400
26 1 3.1298 -0.7087 -1.2580
27 1 0.4556 -2.1831 -1.2680
28 1 1.0731 -4.6488 -2.0635
29 1 0.2558 -3.4938 -3.1433
30 1 -0.3861 -6.7720 -4.6944
31 1 3.1166 -2.8750 0.0595
32 1 1.6420 -3.8723 0.0837
33 1 1.6509 -2.1814 3.4063
34 1 1.6416 -3.7620 2.5873
35 1 3.1040 -2.7480 2.5492
36 1 0.5811 0.1423 2.4837
37 1 2.0397 -0.4833 3.2898
38 1 2.1121 1.0441 2.3792
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710007232.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:12:01
Heat of formation + Delta-G solvation = -54.201035 kcal
Electronic energy + Delta-G solvation = -16634.364835 eV
Core-core repulsion = 14090.445295 eV
Total energy + Delta-G solvation = -2543.919540 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.80158 -36.54083 -33.22428 -32.86580 -31.83175 -28.32789 -27.03790 -26.40917
-25.58563 -22.55834 -21.89586 -20.87351 -18.45643 -16.47964 -15.89953 -15.60339
-15.43563 -14.76637 -14.40148 -14.00044 -13.53424 -13.41962 -13.07172 -12.44832
-12.34152 -12.12129 -11.94759 -11.83884 -11.60555 -11.32176 -11.19230 -10.93866
-10.91568 -10.63702 -10.47345 -10.25722 -10.16793 -9.61937 -9.05800 -8.77102
-8.18137 -8.10167 -6.09761 -4.11162 3.30050 3.36490 3.43310 3.96163
4.35393 4.75485 4.91849 4.99949 5.10147 5.23834 5.26795 5.35532
5.42709 5.47916 5.55516 5.64087 5.72778 5.78635 5.84267 5.87509
5.96929 5.98781 6.20153 6.22057 6.27189 6.34387 6.40426 6.61000
6.75151 7.14634 7.21656 7.24287 7.45882 7.82090 8.18188 8.62684
9.03580 9.53927 11.01830
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.047317 B = 0.005739 C = 0.005510
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 591.607253 B = 4877.890962 C = 5080.876376
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.086 3.914
3 H 0.082 0.918
4 C -0.107 4.107
5 C 0.089 3.911
6 O -0.388 6.388
7 C 0.196 3.804
8 C -0.513 4.513
9 H 0.067 0.933
10 C 0.056 3.944
11 N -0.899 5.899
12 Si 0.907 3.093
13 H -0.270 1.270
14 H -0.282 1.282
15 H -0.283 1.283
16 C -0.131 4.131
17 C 0.080 3.920
18 H 0.043 0.957
19 C -0.147 4.147
20 N -0.531 5.531
21 C 0.018 3.982
22 H 0.064 0.936
23 H 0.053 0.947
24 H 0.063 0.937
25 H 0.070 0.930
26 H 0.075 0.925
27 H 0.048 0.952
28 H 0.004 0.996
29 H 0.003 0.997
30 H 0.263 0.737
31 H 0.075 0.925
32 H 0.068 0.932
33 H 0.053 0.947
34 H 0.060 0.940
35 H 0.063 0.937
36 H 0.025 0.975
37 H 0.070 0.930
38 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.900 10.572 12.319 16.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.250 4.250
2 C -0.023 4.023
3 H 0.100 0.900
4 C -0.145 4.145
5 C 0.030 3.970
6 O -0.308 6.308
7 C 0.121 3.879
8 C -0.551 4.551
9 H 0.085 0.915
10 C -0.145 4.145
11 N -0.539 5.539
12 Si 0.734 3.266
13 H -0.194 1.194
14 H -0.208 1.208
15 H -0.209 1.209
16 C -0.169 4.169
17 C -0.028 4.028
18 H 0.061 0.939
19 C -0.204 4.204
20 N -0.256 5.256
21 C -0.130 4.130
22 H 0.082 0.918
23 H 0.072 0.928
24 H 0.082 0.918
25 H 0.088 0.912
26 H 0.094 0.906
27 H 0.066 0.934
28 H 0.022 0.978
29 H 0.021 0.979
30 H 0.072 0.928
31 H 0.094 0.906
32 H 0.087 0.913
33 H 0.072 0.928
34 H 0.079 0.921
35 H 0.082 0.918
36 H 0.044 0.956
37 H 0.089 0.911
38 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 1.458 10.452 12.164 16.104
hybrid contribution -0.975 -0.591 -0.567 1.273
sum 0.484 9.861 11.597 15.230
Atomic orbital electron populations
1.22542 0.97839 1.02716 1.01935 1.21646 0.92615 0.97755 0.90253
0.89966 1.21637 1.02183 0.94735 0.95961 1.21883 0.96603 0.91462
0.87016 1.87894 1.48154 1.50303 1.44409 1.20220 0.89579 0.84217
0.93862 1.21119 1.06023 1.15722 1.12279 0.91495 1.24946 0.94973
0.96651 0.97942 1.69972 1.15032 1.27706 1.41162 0.86299 0.79457
0.79029 0.81830 1.19448 1.20841 1.20862 1.22130 1.02477 0.98869
0.93439 1.21629 0.97084 0.88178 0.95944 0.93892 1.21924 1.02209
1.00124 0.96158 1.62189 1.59505 1.01973 1.01926 1.22454 0.98610
0.98668 0.93277 0.91753 0.92835 0.91812 0.91168 0.90589 0.93398
0.97784 0.97914 0.92751 0.90648 0.91340 0.92776 0.92131 0.91770
0.95635 0.91098 0.91763
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.38 8.18 37.16 0.30 -2.07 16
2 C 0.09 1.13 2.93 -67.72 -0.20 0.93 16
3 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16
4 C -0.11 -1.73 5.26 -26.65 -0.14 -1.87 16
5 C 0.09 1.72 2.37 -26.60 -0.06 1.66 16
6 O -0.39 -9.59 9.98 -35.23 -0.35 -9.94 16
7 C 0.20 5.44 5.51 36.01 0.20 5.64 16
8 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16
9 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16
10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
11 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16
12 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16
13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
16 C -0.13 -2.27 5.00 -26.65 -0.13 -2.40 16
17 C 0.08 1.12 2.15 -67.72 -0.15 0.97 16
18 H 0.04 0.61 6.19 -51.93 -0.32 0.29 16
19 C -0.15 -1.74 8.77 37.16 0.33 -1.41 16
20 N -0.53 -7.00 4.69 -226.94 -1.07 -8.06 16
21 C 0.02 0.19 8.91 60.07 0.53 0.72 16
22 H 0.06 0.89 4.80 -51.93 -0.25 0.65 16
23 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16
24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
27 H 0.05 0.94 6.21 -51.93 -0.32 0.62 16
28 H 0.00 0.12 7.97 -51.93 -0.41 -0.29 16
29 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16
30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
32 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16
33 H 0.05 0.55 6.23 -51.93 -0.32 0.22 16
34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.03 0.26 6.46 -51.93 -0.34 -0.08 16
37 H 0.07 0.68 5.96 -51.93 -0.31 0.37 16
38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
LS Contribution 290.44 15.07 4.38 4.38
Total: -1.00 -30.89 290.44 -7.44 -38.33
By element:
Atomic # 1 Polarization: 3.00 SS G_CDS: -6.37 Total: -3.37 kcal
Atomic # 6 Polarization: -12.20 SS G_CDS: 0.26 Total: -11.94 kcal
Atomic # 7 Polarization: -34.13 SS G_CDS: -0.33 Total: -34.46 kcal
Atomic # 8 Polarization: -9.59 SS G_CDS: -0.35 Total: -9.94 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -30.89 -7.44 -38.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710007232.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.871 kcal
(2) G-P(sol) polarization free energy of solvation -30.892 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds