Wall clock time and date at job start Mon Mar 30 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45815 * 2 1 4 4 C 1.53039 * 109.45896 * 240.02453 * 2 1 3 5 5 C 1.53123 * 109.31189 * 299.14178 * 4 2 1 6 6 O 1.42896 * 109.52132 * 182.46557 * 5 4 2 7 7 C 1.42901 * 113.99723 * 210.00239 * 6 5 4 8 8 C 1.50700 * 109.47452 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99744 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99881 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47460 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47469 * 119.99955 * 12 10 8 15 15 H 1.48507 * 109.47028 * 240.00069 * 12 10 8 16 16 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 17 17 C 1.53036 * 109.30712 * 57.59477 * 16 5 4 18 18 H 1.09002 * 109.45657 * 60.85248 * 17 16 5 19 19 C 1.53006 * 109.46167 * 180.82822 * 17 16 5 20 20 N 1.46842 * 109.46283 * 119.97418 * 2 1 3 21 21 C 1.46910 * 110.99703 * 294.17538 * 20 2 1 22 22 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47473 * 299.97705 * 1 2 3 24 24 H 1.08997 * 109.47715 * 59.97734 * 1 2 3 25 25 H 1.09002 * 109.50563 * 59.10510 * 4 2 1 26 26 H 1.09003 * 109.50107 * 179.18492 * 4 2 1 27 27 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 28 28 H 1.09003 * 109.46880 * 299.99804 * 7 6 5 29 29 H 1.08995 * 109.47629 * 59.99471 * 7 6 5 30 30 H 0.97003 * 120.00254 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46579 * 297.65836 * 16 5 4 32 32 H 1.08997 * 109.53656 * 177.57437 * 16 5 4 33 33 H 1.08993 * 109.46913 * 180.02562 * 19 17 16 34 34 H 1.09000 * 109.46466 * 300.05540 * 19 17 16 35 35 H 1.08996 * 109.47097 * 60.05056 * 19 17 16 36 36 H 1.08993 * 109.46992 * 60.00241 * 21 20 2 37 37 H 1.08996 * 109.47228 * 180.02562 * 21 20 2 38 38 H 1.09000 * 109.46908 * 299.99999 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 1.5450 -2.1700 -1.2360 6 8 2.0658 -2.8633 -2.3718 7 6 1.2199 -3.9103 -2.8517 8 6 1.8634 -4.5692 -4.0445 9 1 2.8227 -4.2233 -4.4003 10 6 1.2280 -5.6143 -4.6810 11 7 0.0607 -6.0365 -4.2469 12 14 2.0261 -6.4314 -6.1591 13 1 3.3276 -5.7757 -6.4445 14 1 2.2495 -7.8705 -5.8686 15 1 1.1353 -6.2972 -7.3398 16 6 2.0269 -2.8533 0.0469 17 6 1.5173 -2.0705 1.2591 18 1 0.4274 -2.0607 1.2531 19 6 2.0141 -2.7385 2.5429 20 7 2.0193 -0.6917 1.1993 21 6 1.6651 0.0507 2.4165 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3634 0.5141 -0.8897 25 1 1.6637 -0.2165 -2.1400 26 1 3.1298 -0.7087 -1.2580 27 1 0.4556 -2.1831 -1.2680 28 1 1.0731 -4.6488 -2.0635 29 1 0.2558 -3.4938 -3.1433 30 1 -0.3861 -6.7720 -4.6944 31 1 3.1166 -2.8750 0.0595 32 1 1.6420 -3.8723 0.0837 33 1 1.6509 -2.1814 3.4063 34 1 1.6416 -3.7620 2.5873 35 1 3.1040 -2.7480 2.5492 36 1 0.5811 0.1423 2.4837 37 1 2.0397 -0.4833 3.2898 38 1 2.1121 1.0441 2.3792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:01 Heat of formation + Delta-G solvation = -54.201035 kcal Electronic energy + Delta-G solvation = -16634.364835 eV Core-core repulsion = 14090.445295 eV Total energy + Delta-G solvation = -2543.919540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80158 -36.54083 -33.22428 -32.86580 -31.83175 -28.32789 -27.03790 -26.40917 -25.58563 -22.55834 -21.89586 -20.87351 -18.45643 -16.47964 -15.89953 -15.60339 -15.43563 -14.76637 -14.40148 -14.00044 -13.53424 -13.41962 -13.07172 -12.44832 -12.34152 -12.12129 -11.94759 -11.83884 -11.60555 -11.32176 -11.19230 -10.93866 -10.91568 -10.63702 -10.47345 -10.25722 -10.16793 -9.61937 -9.05800 -8.77102 -8.18137 -8.10167 -6.09761 -4.11162 3.30050 3.36490 3.43310 3.96163 4.35393 4.75485 4.91849 4.99949 5.10147 5.23834 5.26795 5.35532 5.42709 5.47916 5.55516 5.64087 5.72778 5.78635 5.84267 5.87509 5.96929 5.98781 6.20153 6.22057 6.27189 6.34387 6.40426 6.61000 6.75151 7.14634 7.21656 7.24287 7.45882 7.82090 8.18188 8.62684 9.03580 9.53927 11.01830 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.005739 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.607253 B = 4877.890962 C = 5080.876376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.086 3.914 3 H 0.082 0.918 4 C -0.107 4.107 5 C 0.089 3.911 6 O -0.388 6.388 7 C 0.196 3.804 8 C -0.513 4.513 9 H 0.067 0.933 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.907 3.093 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.283 1.283 16 C -0.131 4.131 17 C 0.080 3.920 18 H 0.043 0.957 19 C -0.147 4.147 20 N -0.531 5.531 21 C 0.018 3.982 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.004 0.996 29 H 0.003 0.997 30 H 0.263 0.737 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 10.572 12.319 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.023 4.023 3 H 0.100 0.900 4 C -0.145 4.145 5 C 0.030 3.970 6 O -0.308 6.308 7 C 0.121 3.879 8 C -0.551 4.551 9 H 0.085 0.915 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.734 3.266 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.169 4.169 17 C -0.028 4.028 18 H 0.061 0.939 19 C -0.204 4.204 20 N -0.256 5.256 21 C -0.130 4.130 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.458 10.452 12.164 16.104 hybrid contribution -0.975 -0.591 -0.567 1.273 sum 0.484 9.861 11.597 15.230 Atomic orbital electron populations 1.22542 0.97839 1.02716 1.01935 1.21646 0.92615 0.97755 0.90253 0.89966 1.21637 1.02183 0.94735 0.95961 1.21883 0.96603 0.91462 0.87016 1.87894 1.48154 1.50303 1.44409 1.20220 0.89579 0.84217 0.93862 1.21119 1.06023 1.15722 1.12279 0.91495 1.24946 0.94973 0.96651 0.97942 1.69972 1.15032 1.27706 1.41162 0.86299 0.79457 0.79029 0.81830 1.19448 1.20841 1.20862 1.22130 1.02477 0.98869 0.93439 1.21629 0.97084 0.88178 0.95944 0.93892 1.21924 1.02209 1.00124 0.96158 1.62189 1.59505 1.01973 1.01926 1.22454 0.98610 0.98668 0.93277 0.91753 0.92835 0.91812 0.91168 0.90589 0.93398 0.97784 0.97914 0.92751 0.90648 0.91340 0.92776 0.92131 0.91770 0.95635 0.91098 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 8.18 37.16 0.30 -2.07 16 2 C 0.09 1.13 2.93 -67.72 -0.20 0.93 16 3 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 4 C -0.11 -1.73 5.26 -26.65 -0.14 -1.87 16 5 C 0.09 1.72 2.37 -26.60 -0.06 1.66 16 6 O -0.39 -9.59 9.98 -35.23 -0.35 -9.94 16 7 C 0.20 5.44 5.51 36.01 0.20 5.64 16 8 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16 9 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 12 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 C -0.13 -2.27 5.00 -26.65 -0.13 -2.40 16 17 C 0.08 1.12 2.15 -67.72 -0.15 0.97 16 18 H 0.04 0.61 6.19 -51.93 -0.32 0.29 16 19 C -0.15 -1.74 8.77 37.16 0.33 -1.41 16 20 N -0.53 -7.00 4.69 -226.94 -1.07 -8.06 16 21 C 0.02 0.19 8.91 60.07 0.53 0.72 16 22 H 0.06 0.89 4.80 -51.93 -0.25 0.65 16 23 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.05 0.94 6.21 -51.93 -0.32 0.62 16 28 H 0.00 0.12 7.97 -51.93 -0.41 -0.29 16 29 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 33 H 0.05 0.55 6.23 -51.93 -0.32 0.22 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.26 6.46 -51.93 -0.34 -0.08 16 37 H 0.07 0.68 5.96 -51.93 -0.31 0.37 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 290.44 15.07 4.38 4.38 Total: -1.00 -30.89 290.44 -7.44 -38.33 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.37 Total: -3.37 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 0.26 Total: -11.94 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.33 Total: -34.46 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.35 Total: -9.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.89 -7.44 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.871 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds